Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 4.7e-117 424.5 206 100.0
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 2.4e-52 209.5 194 60.3
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 3.1e-52 209.1 194 60.8
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 7.0e-52 208.0 194 59.8
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 7.0e-52 208.0 194 59.3
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.6e-51 206.8 194 59.8
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 1.6e-51 206.8 197 58.4
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 1.6e-51 206.8 197 58.4
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 2.6e-51 206.1 195 58.5
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 2.6e-51 206.1 197 58.4
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 2.6e-51 206.1 197 58.4
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 3.5e-51 205.7 189 59.8
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 4.5e-51 205.3 198 57.6
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 7.7e-51 204.5 198 57.6
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 1.7e-50 203.4 194 58.8
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.7e-50 203.4 200 56.0
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 6.5e-50 201.4 196 57.1
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 3.2e-49 199.1 197 57.4
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 3.2e-49 199.1 205 54.1
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 3.2e-49 199.1 196 56.6
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 5.5e-49 198.4 204 54.9
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 5.5e-49 198.4 202 55.0
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 2.1e-48 196.4 210 52.4
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 2.1e-48 196.4 205 54.1
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 3.6e-48 195.7 203 54.7
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.6e-48 195.7 202 55.0
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 6.1e-48 194.9 202 55.0
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 8.0e-48 194.5 198 55.6
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 8.0e-48 194.5 202 55.0
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 8.0e-48 194.5 197 55.3
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 1.0e-47 194.1 201 53.7
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 1.8e-47 193.4 202 54.0
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 1.8e-47 193.4 206 52.4
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 1.8e-47 193.4 204 52.0
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 2.3e-47 193.0 202 53.0
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 3.0e-47 192.6 201 51.7
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 5.2e-47 191.8 206 51.9
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 6.7e-47 191.4 197 53.8
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 1.2e-46 190.7 203 51.7
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 1.2e-46 190.7 206 51.5
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 1.2e-46 190.7 202 54.0
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 1.5e-46 190.3 200 54.0
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 1.5e-46 190.3 201 51.2
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 2.0e-46 189.9 201 53.2
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.6e-46 189.5 202 52.5
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.6e-46 189.5 202 52.5
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.6e-46 189.5 201 53.7
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 2.6e-46 189.5 204 52.5
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 2.6e-46 189.5 205 52.7
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 2.6e-46 189.5 201 51.7
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 3.3e-46 189.1 205 52.2
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 3.3e-46 189.1 202 53.5
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 4.4e-46 188.7 202 53.0
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 5.7e-46 188.3 202 54.0
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 5.7e-46 188.3 204 51.0
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 9.7e-46 187.6 181 58.6
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 9.7e-46 187.6 202 53.0
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.7e-45 186.8 202 53.0
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 2.8e-45 186.0 202 51.5
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 2.8e-45 186.0 197 53.8
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.8e-45 186.0 202 50.0
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 3.7e-45 185.7 187 55.6
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 4.8e-45 185.3 196 55.1
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 4.8e-45 185.3 198 51.5
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 4.8e-45 185.3 204 52.0
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 4.8e-45 185.3 202 51.0
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 6.3e-45 184.9 206 49.5
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 8.2e-45 184.5 202 52.0
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 8.2e-45 184.5 202 52.0
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 1.1e-44 184.1 193 53.9
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 1.1e-44 184.1 205 50.7
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 1.4e-44 183.7 205 50.7
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 1.8e-44 183.3 204 52.0
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 1.8e-44 183.3 204 52.0
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 2.4e-44 183.0 202 52.0
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 4.1e-44 182.2 202 50.0
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 5.3e-44 181.8 197 53.3
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 9.1e-44 181.0 202 52.0
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.2e-43 180.6 207 52.2
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 1.6e-43 180.3 197 51.8
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.6e-43 180.3 197 53.3
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.6e-43 180.3 197 53.3
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 1.6e-43 180.3 202 52.0
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 1.6e-43 180.3 202 51.5
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 1.6e-43 180.3 195 51.8
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 2.0e-43 179.9 202 50.5
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 2.7e-43 179.5 197 51.8
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 3.5e-43 179.1 199 51.3
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 3.5e-43 179.1 199 51.3
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 5.9e-43 178.3 199 51.3
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 7.7e-43 177.9 202 51.0
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 1.0e-42 177.6 195 53.3
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 1.0e-42 177.6 197 50.3
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 2.9e-42 176.0 182 54.4
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 5.0e-42 175.3 203 50.2
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 6.5e-42 174.9 201 50.7
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 8.5e-42 174.5 197 49.7
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.1e-41 174.1 201 48.8
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.1e-41 174.1 202 49.0
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 1.5e-41 173.7 152 60.5
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 1.5e-41 173.7 202 48.0
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 3.2e-41 172.6 197 49.7
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 9.4e-41 171.0 203 49.3
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 4.7e-40 168.7 155 58.7
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 4.7e-40 168.7 195 49.7
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 1.0e-39 167.5 201 47.3
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.4e-39 167.2 224 45.1
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 2.3e-39 166.4 185 50.8
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.3e-39 166.4 199 50.3
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 3.0e-39 166.0 201 48.8
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.2e-39 165.2 182 52.7
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.8e-39 164.9 213 48.8
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 2.0e-38 163.3 188 48.9
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 2.0e-38 163.3 201 48.8
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 3.4e-38 162.5 189 51.3
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 4.4e-38 162.2 182 50.5
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 5.7e-38 161.8 213 48.8
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.1e-36 157.5 199 48.2
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.8e-36 156.8 193 49.2
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 6.1e-32 141.7 152 53.3
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 5.2e-31 138.7 152 52.6
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 5.9e-27 125.2 211 38.9
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.3e-26 123.2 155 49.0
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 6.6e-26 121.7 113 56.6
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 4.3e-25 119.0 191 38.2
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 5.6e-25 118.6 189 40.2
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.6e-25 118.6 115 56.5
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.8e-23 113.6 178 38.8
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 4.4e-22 109.0 192 39.1
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 7.0e-20 101.7 107 54.2
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.3e-17 92.4 169 39.6
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.3e-17 92.4 166 40.4
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 3.6e-16 89.4 170 35.3
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 2.3e-15 86.7 216 29.6
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 9.8e-14 81.3 71 59.2
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 3.5e-11 72.8 93 43.0
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 6.0e-11 72.0 93 40.9
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 6.0e-11 72.0 93 41.9
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.3e-10 70.1 65 58.5
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 2.3e-10 70.1 91 40.7


User provided reference genes

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