Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 5.3e-153 544.3 266 100.0
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 1.7e-90 336.7 273 64.8
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 2.2e-90 336.3 276 63.8
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 1.4e-89 333.6 273 64.1
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.2e-88 330.5 272 63.6
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 6.0e-88 328.2 271 63.1
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 7.8e-88 327.8 273 62.6
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 3.9e-87 325.5 274 60.2
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 4.3e-86 322.0 269 61.0
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.6e-85 320.1 269 62.1
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 2.1e-85 319.7 272 62.1
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 6.2e-85 318.2 269 60.6
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 8.1e-85 317.8 274 58.8
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 8.1e-85 317.8 275 62.2
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 4.0e-84 315.5 272 59.9
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 4.0e-84 315.5 274 60.2
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 5.2e-84 315.1 278 60.8
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 5.2e-84 315.1 272 61.0
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.2e-84 315.1 272 61.0
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 1.2e-83 313.9 272 61.4
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 1.5e-83 313.5 271 59.4
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 2.0e-83 313.2 271 60.1
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 2.6e-83 312.8 262 60.7
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 3.4e-83 312.4 269 60.2
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 4.4e-83 312.0 267 60.3
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.4e-83 312.0 272 60.7
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.4e-83 312.0 271 58.3
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 4.4e-83 312.0 273 59.7
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 5.8e-83 311.6 274 60.9
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 5.8e-83 311.6 271 58.7
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 7.5e-83 311.2 271 60.1
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 7.5e-83 311.2 272 59.6
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 9.9e-83 310.8 272 60.3
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 9.9e-83 310.8 271 58.3
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 9.9e-83 310.8 271 59.8
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 1.7e-82 310.1 268 59.7
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 2.2e-82 309.7 276 58.7
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 2.2e-82 309.7 274 58.8
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 3.7e-82 308.9 260 61.9
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 4.9e-82 308.5 272 59.2
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 4.9e-82 308.5 271 59.0
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.1e-81 307.4 271 57.6
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 1.1e-81 307.4 270 58.1
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 1.9e-81 306.6 272 58.1
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 1.9e-81 306.6 271 59.4
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 1.9e-81 306.6 272 59.2
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 2.4e-81 306.2 268 60.4
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 3.2e-81 305.8 272 60.3
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 4.1e-81 305.4 275 59.6
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 9.2e-81 304.3 270 58.9
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 1.2e-80 303.9 269 58.4
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 1.2e-80 303.9 269 59.1
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.2e-80 303.9 273 58.2
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 2.1e-80 303.1 274 56.9
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 3.5e-80 302.4 274 59.1
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 4.6e-80 302.0 275 58.2
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 4.6e-80 302.0 268 59.3
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 6.0e-80 301.6 272 59.2
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 6.0e-80 301.6 268 59.3
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 1.0e-79 300.8 268 59.3
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.3e-79 300.4 266 59.4
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 2.3e-79 299.7 271 58.7
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 1.1e-78 297.4 268 57.8
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 1.5e-78 297.0 272 57.7
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 3.3e-78 295.8 268 58.2
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 4.3e-78 295.4 272 57.7
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 7.3e-78 294.7 271 54.2
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 1.6e-77 293.5 272 58.1
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 2.8e-77 292.7 273 57.9
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 3.6e-77 292.4 272 57.4
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 4.7e-77 292.0 272 58.1
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 8.1e-77 291.2 274 58.4
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 1.1e-76 290.8 272 58.1
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.4e-76 290.4 272 57.7
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 1.8e-76 290.0 272 57.7
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.1e-76 289.3 273 55.3
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 4.0e-76 288.9 270 57.0
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 4.0e-76 288.9 201 70.1
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 5.2e-76 288.5 272 57.0
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 1.2e-75 287.3 272 57.4
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 1.2e-75 287.3 272 57.0
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 1.5e-75 287.0 274 57.3
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 2.0e-75 286.6 272 57.4
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 5.8e-75 285.0 298 52.3
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 7.6e-75 284.6 270 56.7
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 9.9e-75 284.3 270 56.3
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 9.9e-75 284.3 270 56.3
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 1.3e-74 283.9 273 56.0
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 2.2e-74 283.1 203 66.0
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 2.2e-74 283.1 269 57.6
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 4.9e-74 282.0 251 59.0
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 1.4e-73 280.4 267 57.7
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 7.1e-73 278.1 345 45.8
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 9.2e-73 277.7 268 56.7
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 6.0e-72 275.0 281 53.4
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 6.0e-72 275.0 270 55.9
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 3.9e-71 272.3 244 59.0
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.5e-70 270.4 249 57.8
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 1.9e-70 270.0 276 54.0
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.3e-70 269.2 260 54.2
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 7.3e-70 268.1 269 56.1
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.4e-68 263.8 284 51.4
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 5.4e-65 251.9 270 51.9
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.2e-64 250.8 266 53.0
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 4.6e-64 248.8 318 47.8
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.7e-63 246.9 263 53.6
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 6.6e-63 245.0 314 44.6
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 2.8e-61 239.6 242 54.5
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 2.4e-60 236.5 234 54.3
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 1.5e-59 233.8 279 50.2
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 2.7e-56 223.0 210 56.7
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 1.3e-55 220.7 265 45.3
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 2.5e-54 216.5 232 52.6
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 5.6e-54 215.3 213 54.0
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 6.2e-53 211.8 216 54.2
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 8.1e-53 211.5 291 43.3
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.4e-52 210.7 276 47.5
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 5.8e-51 205.3 233 49.4
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 9.9e-51 204.5 222 50.9
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 9.3e-49 198.0 270 44.1
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.9e-47 192.6 149 60.4
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.8e-44 183.7 272 39.0
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.9e-42 175.6 111 75.7
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 3.2e-41 172.9 174 56.3
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.5e-41 172.2 111 73.9
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 5.5e-41 172.2 168 55.4
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.2e-40 171.0 111 74.8
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.0e-39 166.4 166 54.2
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.9e-39 166.0 161 54.0
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 3.4e-35 152.9 269 38.3
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 5.9e-35 152.1 106 69.8
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 7.9e-32 141.7 111 64.9
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 2.2e-29 133.7 259 35.1
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 1.9e-25 120.6 95 57.9
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 1.6e-24 117.5 180 37.2
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 8.8e-23 111.7 205 36.6
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.1e-22 111.3 284 29.9
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 2.0e-22 110.5 66 75.8
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.6e-16 89.7 99 48.5
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 3.1e-12 76.6 107 43.0
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 8.5e-10 68.6 80 45.0
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 5.5e-09 65.9 41 78.0
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 1.2e-06 58.2 47 63.8


User provided reference genes

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