Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17995 Sapria himalayana HOM05D000083 ORTHO05D003582 5.9e-83 310.8 160 100.0
Sed0020503 Sechium edule HOM05D000083 ORTHO05D003582 3.9e-34 148.7 128 57.0
Manes.11G101900 Manihot esculenta HOM05D000083 ORTHO05D003582 5.1e-34 148.3 88 80.7
arahy.Tifrunner.gnm1.ann1.FSDW2L Arachis hypogaea HOM05D000083 ORTHO05D003582 3.3e-33 145.6 88 77.3
arahy.Tifrunner.gnm1.ann1.ZIJB47 Arachis hypogaea HOM05D000083 ORTHO05D003582 3.3e-33 145.6 88 77.3
ClCG10G011890 Citrullus lanatus HOM05D000083 ORTHO05D003582 3.3e-33 145.6 88 76.1
Potri.007G070100 Populus trichocarpa HOM05D000083 ORTHO05D003582 4.3e-33 145.2 88 78.4
CsaV3_3G031470 Cucumis sativus L. HOM05D000083 ORTHO05D003582 5.6e-33 144.8 88 75.0
CiPaw.04G139600 Carya illinoinensis HOM05D000083 ORTHO05D003582 9.6e-33 144.1 88 73.9
Sabra05G0078000 Salix brachista HOM05D000083 ORTHO05D003582 9.6e-33 144.1 88 78.4
MD13G1006900 Malus domestica HOM05D000083 ORTHO05D003582 1.3e-32 143.7 88 73.9
MELO3C024030.2 Cucumis melo HOM05D000083 ORTHO05D003582 1.6e-32 143.3 88 73.9
MD16G1000900 Malus domestica HOM05D000083 ORTHO05D003582 1.6e-32 143.3 88 73.9
Prupe.1G346000 Prunus persica HOM05D000083 ORTHO05D003582 2.1e-32 142.9 88 75.0
Potri.005G094200 Populus trichocarpa HOM05D000083 ORTHO05D003582 2.8e-32 142.5 88 77.3
Sed0024928 Sechium edule HOM05D000083 ORTHO05D003582 3.6e-32 142.1 88 75.0
Eucgr.J00858 Eucalyptus grandis HOM05D000083 ORTHO05D003582 4.8e-32 141.7 88 71.6
Glyma.12G027600 Glycine max HOM05D000083 ORTHO05D003582 1.1e-31 140.6 88 72.7
Cpa.g.sc119.48 Carica papaya HOM05D000083 ORTHO05D003582 1.8e-31 139.8 88 75.0
Phvul.011G030800 Phaseolus vulgaris HOM05D000083 ORTHO05D003582 1.8e-31 139.8 88 72.7
Atru.chr11.1178 Acer truncatum HOM05D000083 ORTHO05D003582 2.4e-31 139.4 87 71.3
VMungo1383G1323 Vigna mungo HOM05D000083 ORTHO05D003582 2.4e-31 139.4 88 72.7
Haze_11721 Corylus avellana HOM05D000083 ORTHO05D003582 3.1e-31 139.0 88 70.5
Glyma.11G101700 Glycine max HOM05D000083 ORTHO05D003582 4.0e-31 138.7 88 70.5
Lalb_Chr03g0024821 Lupinus albus HOM05D000083 ORTHO05D003582 4.0e-31 138.7 88 70.5
Sabra07G0058700 Salix brachista HOM05D000083 ORTHO05D003582 4.0e-31 138.7 88 76.1
CANSAT64G2172 Cannabis sativa HOM05D000083 ORTHO05D003582 5.3e-31 138.3 93 68.8
Lj3g0012190 Lotus japonicus HOM05D000083 ORTHO05D003582 5.3e-31 138.3 88 72.7
FvH4_4g36790 Fragaria vesca HOM05D000083 ORTHO05D003582 1.2e-30 137.1 88 71.6
FAN07G1039 Fragaria x ananassa HOM05D000083 ORTHO05D003582 1.2e-30 137.1 88 71.6
FAN12G3263 Fragaria x ananassa HOM05D000083 ORTHO05D003582 1.2e-30 137.1 88 71.6
RcHm_v2.0_Chr4g0446521 Rosa chinensis HOM05D000083 ORTHO05D003582 1.2e-30 137.1 88 71.6
Lalb_Chr19g0139361 Lupinus albus HOM05D000083 ORTHO05D003582 1.5e-30 136.7 87 71.3
Ciclev10030510m.g Citrus clementina HOM05D000083 ORTHO05D003582 2.6e-30 136.0 88 72.7
FAN17G2779 Fragaria x ananassa HOM05D000083 ORTHO05D003582 3.4e-30 135.6 88 70.5
Lj3C850G18 Lonicera japonica HOM05D000083 ORTHO05D003582 3.4e-30 135.6 88 71.6
TPR.G32329 Trifolium pratense HOM05D000083 ORTHO05D003582 4.5e-30 135.2 88 70.5
Aqoxy7G03614 Aquilegia oxysepala HOM05D000083 ORTHO05D003582 5.8e-30 134.8 96 65.6
Ca_19030_v3 Cicer arietinum L. HOM05D000083 ORTHO05D003582 5.8e-30 134.8 88 70.5
PSO782G1916 Papaver somniferum HOM05D000083 ORTHO05D003582 5.8e-30 134.8 96 66.7
Sabra07G0058200 Salix brachista HOM05D000083 ORTHO05D003582 5.8e-30 134.8 88 73.9
PSO063G5474 Papaver somniferum HOM05D000083 ORTHO05D003582 7.6e-30 134.4 96 66.7
TAR629G3380 Trochodendron aralioides HOM05D000083 ORTHO05D003582 7.6e-30 134.4 88 71.6
Actinidia04074 Actinidia chinensis HOM05D000083 ORTHO05D003582 9.9e-30 134.0 88 70.5
Dinv11712 Davidia involucrata HOM05D000083 ORTHO05D003582 9.9e-30 134.0 88 70.5
DCAR_030398 Daucus carota HOM05D000083 ORTHO05D003582 1.3e-29 133.7 88 68.2
Duzib132G0002 Durio zibethinus HOM05D000083 ORTHO05D003582 1.3e-29 133.7 88 70.5
Gohir.A12G134300 Gossypium hirsutum HOM05D000083 ORTHO05D003582 1.3e-29 133.7 88 69.3
Gohir.D12G137900 Gossypium hirsutum HOM05D000083 ORTHO05D003582 1.3e-29 133.7 88 69.3
Gorai.008G149400 Gossypium raimondii HOM05D000083 ORTHO05D003582 1.3e-29 133.7 88 69.3
SGA_v2.0_scaffold99G29461 Striga asiatica HOM05D000083 ORTHO05D003582 1.3e-29 133.7 88 69.3
Thecc.02G160900 Theobroma cacao HOM05D000083 ORTHO05D003582 1.3e-29 133.7 88 71.6
Gohir.D01G014300 Gossypium hirsutum HOM05D000083 ORTHO05D003582 1.7e-29 133.3 87 69.0
Rhsim09G0073200 Rhododendron simsii HOM05D000083 ORTHO05D003582 1.7e-29 133.3 89 68.5
Hund24289 Selenicereus undatus HOM05D000083 ORTHO05D003582 1.7e-29 133.3 133 51.1
GSVIVG01012031001 Vitis vinifera HOM05D000083 ORTHO05D003582 1.7e-29 133.3 88 68.2
Gohir.A01G013000 Gossypium hirsutum HOM05D000083 ORTHO05D003582 2.9e-29 132.5 87 67.8
Medtr4g075410 Medicago truncatula HOM05D000083 ORTHO05D003582 2.9e-29 132.5 88 68.2
TWI53G2094 Tripterygium wilfordii HOM05D000083 ORTHO05D003582 2.9e-29 132.5 88 71.6
TWI74G1512 Tripterygium wilfordii HOM05D000083 ORTHO05D003582 2.9e-29 132.5 88 70.5
TAR371G0617 Trochodendron aralioides HOM05D000083 ORTHO05D003582 3.8e-29 132.1 88 70.5
Duzib248G1611 Durio zibethinus HOM05D000083 ORTHO05D003582 4.9e-29 131.7 94 64.9
Cc00_g03930 Coffea canephora HOM05D000083 ORTHO05D003582 6.4e-29 131.3 88 69.3
Gohir.A03G164300 Gossypium hirsutum HOM05D000083 ORTHO05D003582 6.4e-29 131.3 87 66.7
Gorai.002G016000 Gossypium raimondii HOM05D000083 ORTHO05D003582 6.4e-29 131.3 87 69.0
Medtr4g074875 Medicago truncatula HOM05D000083 ORTHO05D003582 6.4e-29 131.3 88 67.0
AT3G13530 Arabidopsis thaliana HOM05D000083 ORTHO05D003582 8.4e-29 131.0 88 68.2
Oeu027907.6 Olea europaea HOM05D000083 ORTHO05D003582 8.4e-29 131.0 88 69.3
Psat7g176440 Pisum sativum HOM05D000083 ORTHO05D003582 8.4e-29 131.0 88 67.0
THA.LOC104810328 Tarenaya hassleriana HOM05D000083 ORTHO05D003582 8.4e-29 131.0 88 65.9
SalBow6G1016 Salvia bowleyana HOM05D000083 ORTHO05D003582 1.4e-28 130.2 88 68.2
vmacro10904 Vaccinium macrocarpon HOM05D000083 ORTHO05D003582 1.4e-28 130.2 89 67.4
Lalb_Chr10g0095051 Lupinus albus HOM05D000083 ORTHO05D003582 1.9e-28 129.8 86 67.4
QL03p043964 Quercus lobata HOM05D000083 ORTHO05D003582 1.9e-28 129.8 93 67.7
AL3G25440 Arabidopsis lyrata HOM05D000083 ORTHO05D003582 2.4e-28 129.4 88 68.2
Nitab4.5_0011898g0010 Nicotiana tabacum HOM05D000083 ORTHO05D003582 2.4e-28 129.4 88 68.2
DCAR_023443 Daucus carota HOM05D000083 ORTHO05D003582 3.2e-28 129.0 94 63.8
Nitab4.5_0002113g0210 Nicotiana tabacum HOM05D000083 ORTHO05D003582 3.2e-28 129.0 88 67.0
Sp3g11740 Schrenkiella parvula HOM05D000083 ORTHO05D003582 3.2e-28 129.0 88 68.2
Solyc11g033270.2 Solanum lycopersicum HOM05D000083 ORTHO05D003582 4.2e-28 128.6 88 68.2
Sopen11g015750 Solanum pennellii HOM05D000083 ORTHO05D003582 4.2e-28 128.6 88 68.2
CAN.G624.28 Capsicum annuum HOM05D000083 ORTHO05D003582 5.4e-28 128.3 87 67.8
Hma1.2p1_0499F.1_g166780 Hydrangea macrophylla HOM05D000083 ORTHO05D003582 5.4e-28 128.3 87 67.8
Nn7g37822 Nelumbo nucifera HOM05D000083 ORTHO05D003582 5.4e-28 128.3 88 68.2
PGR044G0594 Punica granatum HOM05D000083 ORTHO05D003582 5.4e-28 128.3 88 65.9
CARHR088200 Cardamine hirsuta HOM05D000083 ORTHO05D003582 7.1e-28 127.9 88 68.2
Aa31LG10G1090 Aethionema arabicum HOM05D000083 ORTHO05D003582 9.3e-28 127.5 88 65.9
ATR0326G043 Amborella trichopoda HOM05D000083 ORTHO05D003582 9.3e-28 127.5 88 64.8
Peaxi162Scf00363g00731 Petunia axillaris HOM05D000083 ORTHO05D003582 9.3e-28 127.5 88 68.2
Lsat_1_v5_gn_3_33541 Lactuca sativa HOM05D000083 ORTHO05D003582 2.7e-27 125.9 88 64.8
Peaxi162Scf01172g00034 Petunia axillaris HOM05D000083 ORTHO05D003582 2.7e-27 125.9 88 67.0
BcaB04g18769 Brassica carinata HOM05D000083 ORTHO05D003582 4.6e-27 125.2 88 67.0
Carub.0003s1301 Capsella rubella HOM05D000083 ORTHO05D003582 6.0e-27 124.8 88 65.9
ECA246G2960 Erigeron canadensis HOM05D000083 ORTHO05D003582 6.0e-27 124.8 90 65.6
Sc06g0007920 Simmondsia chinensis HOM05D000083 ORTHO05D003582 6.0e-27 124.8 88 65.9
BcaB04g20987 Brassica carinata HOM05D000083 ORTHO05D003582 7.9e-27 124.4 88 67.0
C01p51560 Brassica napus HOM05D000083 ORTHO05D003582 7.9e-27 124.4 88 67.0
MSTRG.2055 Avicennia marina HOM05D000083 ORTHO05D003582 1.0e-26 124.0 94 60.6
MSTRG.2058 Avicennia marina HOM05D000083 ORTHO05D003582 1.0e-26 124.0 94 60.6
Aa31LG8G730 Aethionema arabicum HOM05D000083 ORTHO05D003582 1.3e-26 123.6 94 61.7
A01p40080 Brassica napus HOM05D000083 ORTHO05D003582 1.3e-26 123.6 88 68.2
Gorai.005G210100 Gossypium raimondii HOM05D000083 ORTHO05D003582 1.8e-26 123.2 87 62.1
AT3G07980 Arabidopsis thaliana HOM05D000083 ORTHO05D003582 2.3e-26 122.9 88 65.9
C03p46440 Brassica napus HOM05D000083 ORTHO05D003582 2.3e-26 122.9 88 67.0
BolC3t16908H Brassica oleracea HOM05D000083 ORTHO05D003582 2.3e-26 122.9 88 67.0
BraA03t12978Z Brassica rapa HOM05D000083 ORTHO05D003582 2.3e-26 122.9 88 67.0
A03p38250 Brassica napus HOM05D000083 ORTHO05D003582 3.0e-26 122.5 88 65.9
AL3G19360 Arabidopsis lyrata HOM05D000083 ORTHO05D003582 3.9e-26 122.1 88 65.9
BcaC01g03989 Brassica carinata HOM05D000083 ORTHO05D003582 3.9e-26 122.1 88 67.0
Sp3g06890 Schrenkiella parvula HOM05D000083 ORTHO05D003582 3.9e-26 122.1 88 64.8
Carub.0003s0756 Capsella rubella HOM05D000083 ORTHO05D003582 5.1e-26 121.7 88 65.9
Gohir.D02G187600 Gossypium hirsutum HOM05D000083 ORTHO05D003582 5.1e-26 121.7 87 62.1
EL10Ac9g22930 Beta vulgaris HOM05D000083 ORTHO05D003582 6.7e-26 121.3 89 61.8
BcaB03g11553 Brassica carinata HOM05D000083 ORTHO05D003582 6.7e-26 121.3 92 59.8
AUR62015218 Chenopodium quinoa HOM05D000083 ORTHO05D003582 6.7e-26 121.3 88 62.5
AUR62017682 Chenopodium quinoa HOM05D000083 ORTHO05D003582 6.7e-26 121.3 88 62.5
Ah.01g012890 Amaranthus hybridus HOM05D000083 ORTHO05D003582 8.7e-26 120.9 88 63.6
HanXRQChr06g0172001 Helianthus annuus HOM05D000083 ORTHO05D003582 8.7e-26 120.9 90 63.3
THA.LOC104822679 Tarenaya hassleriana HOM05D000083 ORTHO05D003582 1.1e-25 120.6 88 62.5
A03p35590 Brassica napus HOM05D000083 ORTHO05D003582 2.5e-25 119.4 88 61.4
BraA03t12735Z Brassica rapa HOM05D000083 ORTHO05D003582 2.5e-25 119.4 88 61.4
Thhalv10019902m.g Eutrema salsugineum HOM05D000083 ORTHO05D003582 3.3e-25 119.0 87 64.4
CARHR082720 Cardamine hirsuta HOM05D000083 ORTHO05D003582 5.6e-25 118.2 88 60.2
DCAR_004230 Daucus carota HOM05D000083 ORTHO05D003582 5.6e-25 118.2 87 64.4
BraA01t04049Z Brassica rapa HOM05D000083 ORTHO05D003582 9.6e-25 117.5 88 64.8
C03p43230 Brassica napus HOM05D000083 ORTHO05D003582 1.3e-24 117.1 88 60.2
BolC3t16592H Brassica oleracea HOM05D000083 ORTHO05D003582 1.3e-24 117.1 88 60.2
HanXRQChr17g0540841 Helianthus annuus HOM05D000083 ORTHO05D003582 1.3e-24 117.1 90 61.1
Ah.01g001600 Amaranthus hybridus HOM05D000083 ORTHO05D003582 2.1e-24 116.3 88 62.5
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 2.1e-24 116.3 88 62.5
Os04g0660500 Oryza sativa ssp. japonica HOM05D000083 ORTHO05D003582 2.1e-24 116.3 88 60.2
HPP92_002089 Vanilla planifolia HOM05D000083 ORTHO05D003582 2.1e-24 116.3 88 62.5
HPP92_002093 Vanilla planifolia HOM05D000083 ORTHO05D003582 2.1e-24 116.3 88 62.5
BolC1t05099H Brassica oleracea HOM05D000083 ORTHO05D003582 1.8e-23 113.2 88 63.6
DCAR_026911 Daucus carota HOM05D000083 ORTHO05D003582 3.1e-23 112.5 94 56.4
Zm00001eb067530 Zea mays HOM05D000083 ORTHO05D003582 4.5e-22 108.6 88 56.8
Zm00001eb432730 Zea mays HOM05D000083 ORTHO05D003582 9.9e-22 107.5 88 56.8
SEGI_09729 Sequoiadendron giganteum HOM05D000083 ORTHO05D003582 4.9e-21 105.1 88 52.3
SMO198G0032 Selaginella moellendorffii HOM05D000083 ORTHO05D003582 1.6e-19 100.1 88 55.7
CBR_g38927 Chara braunii HOM05D000083 ORTHO05D003582 4.3e-17 92.0 88 51.1
BcaB03g11558 Brassica carinata HOM05D000083 ORTHO05D003582 2.1e-16 89.7 90 52.2
CBR_g66805 Chara braunii HOM05D000083 ORTHO05D003582 4.8e-16 88.6 88 47.7
Mapoly0140s0044 Marchantia polymorpha HOM05D000083 ORTHO05D003582 4.8e-16 88.6 92 47.8
SEGI_08600 Sequoiadendron giganteum HOM05D000083 ORTHO05D003582 4.8e-16 88.6 91 42.9
unitig_22.g5628 Utricularia gibba HOM05D000083 ORTHO05D003582 1.4e-15 87.0 60 63.3
PRCOL_00002034 Prasinoderma coloniale HOM05D000083 ORTHO05D003582 1.5e-14 83.6 93 40.9
Pp3c15_25040 Physcomitrium patens HOM05D000083 ORTHO05D003582 3.4e-14 82.4 110 37.3
Pp3c9_25590 Physcomitrium patens HOM05D000083 ORTHO05D003582 4.5e-14 82.0 110 37.3
Pp3c15_11760 Physcomitrium patens HOM05D000083 ORTHO05D003582 7.6e-14 81.3 88 43.2
CDE04G1078 Ceratophyllum demersum HOM05D000083 ORTHO05D003582 1.0e-13 80.9 88 46.6
Cfa022394 Carpinus fangiana HOM05D000083 ORTHO05D003582 1.5e-06 57.0 82 35.4


User provided reference genes

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