Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17994 Sapria himalayana HOM05D000083 ORTHO05D003582 8.5e-185 650.2 329 100.0
Dinv11712 Davidia involucrata HOM05D000083 ORTHO05D003582 1.9e-91 340.1 354 55.9
Potri.005G094200 Populus trichocarpa HOM05D000083 ORTHO05D003582 4.6e-90 335.5 361 55.1
Potri.007G070100 Populus trichocarpa HOM05D000083 ORTHO05D003582 2.3e-89 333.2 361 54.6
Sabra07G0058200 Salix brachista HOM05D000083 ORTHO05D003582 2.3e-89 333.2 361 54.3
Cc00_g03930 Coffea canephora HOM05D000083 ORTHO05D003582 8.7e-89 331.3 352 56.0
TAR629G3380 Trochodendron aralioides HOM05D000083 ORTHO05D003582 1.1e-88 330.9 363 53.7
TWI53G2094 Tripterygium wilfordii HOM05D000083 ORTHO05D003582 3.3e-88 329.3 358 55.3
Sabra05G0078000 Salix brachista HOM05D000083 ORTHO05D003582 1.6e-87 327.0 369 53.9
Atru.chr11.1178 Acer truncatum HOM05D000083 ORTHO05D003582 2.8e-87 326.2 362 55.0
Sabra07G0058700 Salix brachista HOM05D000083 ORTHO05D003582 4.8e-87 325.5 358 54.2
vmacro10904 Vaccinium macrocarpon HOM05D000083 ORTHO05D003582 6.2e-87 325.1 351 55.3
RcHm_v2.0_Chr4g0446521 Rosa chinensis HOM05D000083 ORTHO05D003582 1.4e-86 323.9 352 56.0
TWI74G1512 Tripterygium wilfordii HOM05D000083 ORTHO05D003582 3.1e-86 322.8 358 54.7
Rhsim09G0073200 Rhododendron simsii HOM05D000083 ORTHO05D003582 9.0e-86 321.2 358 53.9
Manes.11G101900 Manihot esculenta HOM05D000083 ORTHO05D003582 1.2e-85 320.9 362 54.4
Prupe.1G346000 Prunus persica HOM05D000083 ORTHO05D003582 1.5e-85 320.5 355 54.6
CANSAT64G2172 Cannabis sativa HOM05D000083 ORTHO05D003582 2.6e-85 319.7 339 55.2
Thecc.02G160900 Theobroma cacao HOM05D000083 ORTHO05D003582 3.4e-85 319.3 361 52.4
Glyma.11G101700 Glycine max HOM05D000083 ORTHO05D003582 4.5e-85 318.9 340 55.3
Lj3g0012190 Lotus japonicus HOM05D000083 ORTHO05D003582 5.8e-85 318.5 349 53.6
Ca_19030_v3 Cicer arietinum L. HOM05D000083 ORTHO05D003582 7.6e-85 318.2 350 54.9
Duzib132G0002 Durio zibethinus HOM05D000083 ORTHO05D003582 1.3e-84 317.4 361 53.2
Ciclev10030510m.g Citrus clementina HOM05D000083 ORTHO05D003582 2.2e-84 316.6 361 53.7
Duzib248G1611 Durio zibethinus HOM05D000083 ORTHO05D003582 3.8e-84 315.8 361 53.2
QL03p043964 Quercus lobata HOM05D000083 ORTHO05D003582 6.5e-84 315.1 360 53.9
FvH4_4g36790 Fragaria vesca HOM05D000083 ORTHO05D003582 8.4e-84 314.7 353 55.5
FAN12G3263 Fragaria x ananassa HOM05D000083 ORTHO05D003582 8.4e-84 314.7 353 55.5
Cpa.g.sc119.48 Carica papaya HOM05D000083 ORTHO05D003582 1.1e-83 314.3 355 54.4
FAN17G2779 Fragaria x ananassa HOM05D000083 ORTHO05D003582 1.4e-83 313.9 353 55.5
Gohir.A03G164300 Gossypium hirsutum HOM05D000083 ORTHO05D003582 1.4e-83 313.9 360 53.1
Aqoxy7G03614 Aquilegia oxysepala HOM05D000083 ORTHO05D003582 1.9e-83 313.5 367 54.0
Lj3C850G18 Lonicera japonica HOM05D000083 ORTHO05D003582 3.2e-83 312.8 346 54.6
Glyma.12G027600 Glycine max HOM05D000083 ORTHO05D003582 4.2e-83 312.4 344 54.4
Gohir.D02G187600 Gossypium hirsutum HOM05D000083 ORTHO05D003582 7.1e-83 311.6 360 52.8
Gorai.005G210100 Gossypium raimondii HOM05D000083 ORTHO05D003582 7.1e-83 311.6 360 52.8
FAN07G1039 Fragaria x ananassa HOM05D000083 ORTHO05D003582 1.2e-82 310.8 354 55.6
Lalb_Chr03g0024821 Lupinus albus HOM05D000083 ORTHO05D003582 1.2e-82 310.8 351 53.8
Lalb_Chr19g0139361 Lupinus albus HOM05D000083 ORTHO05D003582 1.6e-82 310.5 349 53.9
MD16G1000900 Malus domestica HOM05D000083 ORTHO05D003582 1.6e-82 310.5 355 53.2
AUR62015218 Chenopodium quinoa HOM05D000083 ORTHO05D003582 2.1e-82 310.1 323 57.3
AUR62017682 Chenopodium quinoa HOM05D000083 ORTHO05D003582 1.0e-81 307.8 324 57.7
Medtr4g074875 Medicago truncatula HOM05D000083 ORTHO05D003582 1.8e-81 307.0 342 54.1
Medtr4g075410 Medicago truncatula HOM05D000083 ORTHO05D003582 1.8e-81 307.0 349 53.0
SalBow6G1016 Salvia bowleyana HOM05D000083 ORTHO05D003582 3.9e-81 305.8 351 52.1
MD13G1006900 Malus domestica HOM05D000083 ORTHO05D003582 8.7e-81 304.7 355 52.1
EL10Ac9g22930 Beta vulgaris HOM05D000083 ORTHO05D003582 1.5e-80 303.9 324 58.0
Psat7g176440 Pisum sativum HOM05D000083 ORTHO05D003582 1.5e-80 303.9 349 52.4
arahy.Tifrunner.gnm1.ann1.ZIJB47 Arachis hypogaea HOM05D000083 ORTHO05D003582 1.9e-80 303.5 330 55.2
GSVIVG01012031001 Vitis vinifera HOM05D000083 ORTHO05D003582 2.5e-80 303.1 329 57.1
arahy.Tifrunner.gnm1.ann1.FSDW2L Arachis hypogaea HOM05D000083 ORTHO05D003582 4.3e-80 302.4 330 54.8
ClCG10G011890 Citrullus lanatus HOM05D000083 ORTHO05D003582 4.3e-80 302.4 356 52.0
HanXRQChr17g0540841 Helianthus annuus HOM05D000083 ORTHO05D003582 5.7e-80 302.0 326 56.4
Gohir.D12G137900 Gossypium hirsutum HOM05D000083 ORTHO05D003582 9.7e-80 301.2 353 52.7
Gorai.008G149400 Gossypium raimondii HOM05D000083 ORTHO05D003582 9.7e-80 301.2 353 52.7
Ah.01g012890 Amaranthus hybridus HOM05D000083 ORTHO05D003582 1.3e-79 300.8 326 56.7
CiPaw.04G139600 Carya illinoinensis HOM05D000083 ORTHO05D003582 1.3e-79 300.8 359 52.6
MELO3C024030.2 Cucumis melo HOM05D000083 ORTHO05D003582 1.3e-79 300.8 359 52.1
Peaxi162Scf00363g00731 Petunia axillaris HOM05D000083 ORTHO05D003582 1.6e-79 300.4 345 51.9
VMungo1383G1323 Vigna mungo HOM05D000083 ORTHO05D003582 2.2e-79 300.1 335 54.0
TAR371G0617 Trochodendron aralioides HOM05D000083 ORTHO05D003582 4.8e-79 298.9 359 51.8
CsaV3_3G031470 Cucumis sativus L. HOM05D000083 ORTHO05D003582 6.3e-79 298.5 356 52.2
Sed0024928 Sechium edule HOM05D000083 ORTHO05D003582 8.2e-79 298.1 356 52.8
Gorai.002G016000 Gossypium raimondii HOM05D000083 ORTHO05D003582 1.4e-78 297.4 330 53.9
Nn7g37822 Nelumbo nucifera HOM05D000083 ORTHO05D003582 1.4e-78 297.4 350 52.3
PSO782G1916 Papaver somniferum HOM05D000083 ORTHO05D003582 1.4e-78 297.4 350 54.3
SGA_v2.0_scaffold99G29461 Striga asiatica HOM05D000083 ORTHO05D003582 1.8e-78 297.0 338 52.4
AL3G25440 Arabidopsis lyrata HOM05D000083 ORTHO05D003582 2.4e-78 296.6 325 55.4
HanXRQChr06g0172001 Helianthus annuus HOM05D000083 ORTHO05D003582 3.1e-78 296.2 331 54.1
Phvul.011G030800 Phaseolus vulgaris HOM05D000083 ORTHO05D003582 4.1e-78 295.8 327 56.0
Gohir.D01G014300 Gossypium hirsutum HOM05D000083 ORTHO05D003582 9.0e-78 294.7 330 53.6
ECA246G2960 Erigeron canadensis HOM05D000083 ORTHO05D003582 1.2e-77 294.3 337 53.4
PSO063G5474 Papaver somniferum HOM05D000083 ORTHO05D003582 2.6e-77 293.1 350 54.0
Peaxi162Scf01172g00034 Petunia axillaris HOM05D000083 ORTHO05D003582 2.6e-77 293.1 345 53.0
PGR044G0594 Punica granatum HOM05D000083 ORTHO05D003582 2.6e-77 293.1 325 54.2
Haze_11721 Corylus avellana HOM05D000083 ORTHO05D003582 3.4e-77 292.7 402 49.5
Gohir.A01G013000 Gossypium hirsutum HOM05D000083 ORTHO05D003582 4.5e-77 292.4 330 53.3
Gohir.A12G134300 Gossypium hirsutum HOM05D000083 ORTHO05D003582 5.9e-77 292.0 356 51.7
Sp3g11740 Schrenkiella parvula HOM05D000083 ORTHO05D003582 1.0e-76 291.2 327 56.0
Thhalv10019926m.g Eutrema salsugineum HOM05D000083 ORTHO05D003582 2.2e-76 290.0 328 55.8
Carub.0003s1301 Capsella rubella HOM05D000083 ORTHO05D003582 3.8e-76 289.3 327 55.0
Nitab4.5_0002113g0210 Nicotiana tabacum HOM05D000083 ORTHO05D003582 8.5e-76 288.1 335 55.8
Sed0020503 Sechium edule HOM05D000083 ORTHO05D003582 8.5e-76 288.1 356 50.8
CARHR088200 Cardamine hirsuta HOM05D000083 ORTHO05D003582 1.1e-75 287.7 327 55.4
THA.LOC104822679 Tarenaya hassleriana HOM05D000083 ORTHO05D003582 1.1e-75 287.7 328 56.4
BcaB04g18769 Brassica carinata HOM05D000083 ORTHO05D003582 1.4e-75 287.3 327 55.0
AT3G13530 Arabidopsis thaliana HOM05D000083 ORTHO05D003582 3.2e-75 286.2 325 54.5
DCAR_030398 Daucus carota HOM05D000083 ORTHO05D003582 7.2e-75 285.0 333 53.2
ATR0326G043 Amborella trichopoda HOM05D000083 ORTHO05D003582 9.4e-75 284.6 364 47.5
Lsat_1_v5_gn_3_33541 Lactuca sativa HOM05D000083 ORTHO05D003582 2.1e-74 283.5 335 52.5
BraA03t12978Z Brassica rapa HOM05D000083 ORTHO05D003582 2.7e-74 283.1 327 54.4
A03p38250 Brassica napus HOM05D000083 ORTHO05D003582 3.6e-74 282.7 327 54.4
Sopen11g015750 Solanum pennellii HOM05D000083 ORTHO05D003582 3.6e-74 282.7 338 52.4
CAN.G624.28 Capsicum annuum HOM05D000083 ORTHO05D003582 6.1e-74 282.0 352 52.0
Migut.E00701 Erythranthe guttata HOM05D000083 ORTHO05D003582 1.0e-73 281.2 345 50.7
Ah.01g001600 Amaranthus hybridus HOM05D000083 ORTHO05D003582 1.4e-73 280.8 323 54.2
Solyc11g033270.2 Solanum lycopersicum HOM05D000083 ORTHO05D003582 1.4e-73 280.8 338 52.1
BolC3t16908H Brassica oleracea HOM05D000083 ORTHO05D003582 3.0e-73 279.6 327 53.5
DCAR_023443 Daucus carota HOM05D000083 ORTHO05D003582 3.9e-73 279.3 327 52.6
MSTRG.2058 Avicennia marina HOM05D000083 ORTHO05D003582 8.8e-73 278.1 339 49.9
BcaC01g03989 Brassica carinata HOM05D000083 ORTHO05D003582 8.8e-73 278.1 330 53.0
Thhalv10019902m.g Eutrema salsugineum HOM05D000083 ORTHO05D003582 1.5e-72 277.3 329 54.7
Carub.0003s0756 Capsella rubella HOM05D000083 ORTHO05D003582 1.9e-72 276.9 327 52.9
C03p46440 Brassica napus HOM05D000083 ORTHO05D003582 2.5e-72 276.6 329 52.9
CARHR082720 Cardamine hirsuta HOM05D000083 ORTHO05D003582 4.3e-72 275.8 329 51.7
Oeu027907.6 Olea europaea HOM05D000083 ORTHO05D003582 5.7e-72 275.4 327 52.0
Sp3g06890 Schrenkiella parvula HOM05D000083 ORTHO05D003582 5.7e-72 275.4 327 54.4
Aa31LG10G1090 Aethionema arabicum HOM05D000083 ORTHO05D003582 2.2e-71 273.5 335 51.3
Os04g0660500 Oryza sativa ssp. japonica HOM05D000083 ORTHO05D003582 3.7e-71 272.7 324 51.2
Sc06g0007920 Simmondsia chinensis HOM05D000083 ORTHO05D003582 1.1e-70 271.2 333 50.2
AT3G07980 Arabidopsis thaliana HOM05D000083 ORTHO05D003582 2.4e-70 270.0 327 52.0
Zm00001eb067530 Zea mays HOM05D000083 ORTHO05D003582 3.1e-70 269.6 323 50.2
HPP92_002093 Vanilla planifolia HOM05D000083 ORTHO05D003582 4.1e-70 269.2 333 48.9
THA.LOC104810328 Tarenaya hassleriana HOM05D000083 ORTHO05D003582 1.5e-69 267.3 326 53.7
Zm00001eb432730 Zea mays HOM05D000083 ORTHO05D003582 1.0e-68 264.6 323 48.6
AL3G19360 Arabidopsis lyrata HOM05D000083 ORTHO05D003582 2.9e-68 263.1 324 51.5
Hund24289 Selenicereus undatus HOM05D000083 ORTHO05D003582 3.8e-68 262.7 322 51.2
Aa31LG8G730 Aethionema arabicum HOM05D000083 ORTHO05D003582 2.5e-67 260.0 329 52.9
Eucgr.J00858 Eucalyptus grandis HOM05D000083 ORTHO05D003582 3.2e-67 259.6 334 51.5
Lalb_Chr10g0095051 Lupinus albus HOM05D000083 ORTHO05D003582 1.8e-65 253.8 342 49.4
A03p35590 Brassica napus HOM05D000083 ORTHO05D003582 3.3e-64 249.6 314 53.2
BraA03t12735Z Brassica rapa HOM05D000083 ORTHO05D003582 1.3e-63 247.7 309 52.4
CDE04G1078 Ceratophyllum demersum HOM05D000083 ORTHO05D003582 1.7e-63 247.3 341 47.8
C03p43230 Brassica napus HOM05D000083 ORTHO05D003582 2.2e-63 246.9 315 52.4
BolC3t16592H Brassica oleracea HOM05D000083 ORTHO05D003582 6.3e-63 245.4 314 51.9
SEGI_09729 Sequoiadendron giganteum HOM05D000083 ORTHO05D003582 8.5e-60 235.0 376 42.6
TPR.G32329 Trifolium pratense HOM05D000083 ORTHO05D003582 2.4e-54 216.9 327 44.0
SMO198G0032 Selaginella moellendorffii HOM05D000083 ORTHO05D003582 8.0e-50 201.8 321 42.1
DCAR_004230 Daucus carota HOM05D000083 ORTHO05D003582 2.0e-48 197.2 244 49.2
BolC1t05099H Brassica oleracea HOM05D000083 ORTHO05D003582 1.1e-46 191.4 147 70.7
Oeu033540.1 Olea europaea HOM05D000083 ORTHO05D003582 1.4e-46 191.0 263 48.3
SEGI_08600 Sequoiadendron giganteum HOM05D000083 ORTHO05D003582 7.0e-46 188.7 368 37.2
BcaB04g20987 Brassica carinata HOM05D000083 ORTHO05D003582 8.5e-44 181.8 147 67.3
C01p51560 Brassica napus HOM05D000083 ORTHO05D003582 8.5e-44 181.8 147 67.3
BraA01t04049Z Brassica rapa HOM05D000083 ORTHO05D003582 3.2e-43 179.9 139 69.8
DCAR_026911 Daucus carota HOM05D000083 ORTHO05D003582 3.2e-43 179.9 135 66.7
PGSC0003DMG400007647 Solanum tuberosum HOM05D000083 ORTHO05D003582 4.2e-43 179.5 286 44.1
A01p40080 Brassica napus HOM05D000083 ORTHO05D003582 9.4e-43 178.3 139 69.1
Pp3c15_11760 Physcomitrium patens HOM05D000083 ORTHO05D003582 1.3e-39 167.9 321 35.5
Mapoly0140s0044 Marchantia polymorpha HOM05D000083 ORTHO05D003582 2.8e-39 166.8 119 66.4
BcaB03g11553 Brassica carinata HOM05D000083 ORTHO05D003582 1.8e-38 164.1 284 43.3
unitig_22.g5627 Utricularia gibba HOM05D000083 ORTHO05D003582 4.1e-38 162.9 274 41.2
CBR_g38927 Chara braunii HOM05D000083 ORTHO05D003582 5.0e-36 156.0 120 56.7
Pp3c9_25590 Physcomitrium patens HOM05D000083 ORTHO05D003582 8.6e-36 155.2 149 52.3
Pp3c15_25040 Physcomitrium patens HOM05D000083 ORTHO05D003582 2.8e-34 150.2 112 60.7
CBR_g66805 Chara braunii HOM05D000083 ORTHO05D003582 8.0e-34 148.7 122 57.4
BcaB03g11561 Brassica carinata HOM05D000083 ORTHO05D003582 1.1e-30 138.3 258 42.6
BcaB03g11558 Brassica carinata HOM05D000083 ORTHO05D003582 1.9e-27 127.5 185 48.1
PRCOL_00002034 Prasinoderma coloniale HOM05D000083 ORTHO05D003582 4.4e-24 116.3 109 51.4
Hma1.2p1_0499F.1_g166780 Hydrangea macrophylla HOM05D000083 ORTHO05D003582 2.4e-22 110.5 65 81.5
unitig_22.g5628 Utricularia gibba HOM05D000083 ORTHO05D003582 4.6e-21 106.3 62 80.6
Cfa022394 Carpinus fangiana HOM05D000083 ORTHO05D003582 6.0e-21 105.9 99 49.5
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 1.3e-20 104.8 60 85.0
Nitab4.5_0011898g0010 Nicotiana tabacum HOM05D000083 ORTHO05D003582 1.3e-20 104.8 64 81.2
MSTRG.2055 Avicennia marina HOM05D000083 ORTHO05D003582 9.5e-19 98.6 63 76.2
Oeu043479.1 Olea europaea HOM05D001851 ORTHO05D002237 2.4e-14 84.0 103 47.6
Hma1.2p1_0005F.1_g004230 Hydrangea macrophylla HOM05D000083 ORTHO05D003582 3.2e-14 83.6 66 66.7
HPP92_002088 Vanilla planifolia HOM05D000083 ORTHO05D003582 3.2e-14 83.6 68 64.7
BcaB03g11559 Brassica carinata HOM05D000083 ORTHO05D003582 9.5e-11 72.0 60 66.7


User provided reference genes

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