Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1656.0 819 100.0
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1265.0 788 78.8
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1259.2 788 79.1
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1248.4 793 76.8
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1245.3 790 77.7
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1239.6 788 77.2
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1236.5 788 76.5
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1236.1 788 77.5
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1236.1 795 77.5
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1234.2 788 77.8
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1229.2 788 76.4
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1229.2 788 76.3
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1228.4 788 76.1
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1226.5 788 76.3
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1218.8 788 75.1
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1215.3 790 76.1
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1212.6 818 75.1
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1210.3 788 75.9
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1210.3 788 75.9
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1209.5 788 75.6
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1208.4 789 75.4
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1204.9 789 74.9
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1203.7 788 76.0
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1201.8 788 75.8
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1201.8 808 74.9
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1200.3 794 75.7
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1199.1 788 75.9
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1198.0 789 75.0
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1197.6 788 75.8
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1197.2 788 76.3
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1196.8 788 74.1
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1196.4 794 75.2
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1196.0 789 74.8
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1191.4 794 74.9
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1186.4 776 75.6
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1186.0 788 74.1
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1182.9 788 74.0
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1181.8 789 73.6
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1181.4 791 74.5
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1177.5 778 75.6
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1177.5 795 73.5
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1176.4 820 73.3
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1176.0 789 74.4
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1174.1 788 73.2
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1172.9 788 74.2
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1170.6 788 74.0
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1170.6 788 73.7
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1168.3 788 74.1
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1167.9 788 74.1
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1167.1 865 69.2
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1166.4 793 73.4
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1165.2 793 73.4
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1164.8 789 73.1
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1164.4 780 74.7
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1164.4 794 72.7
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1163.3 799 72.7
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1162.5 794 72.8
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1162.5 787 73.7
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1162.1 788 73.0
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1161.7 789 73.1
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1161.7 823 71.4
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1161.4 793 73.0
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1161.0 788 72.3
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1160.6 788 73.0
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1158.3 799 72.0
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1157.9 796 71.9
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1157.5 788 72.0
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1157.1 788 73.5
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1157.1 794 72.2
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1156.0 897 67.0
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1154.8 789 73.3
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1154.4 794 71.8
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1152.1 788 72.8
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1152.1 854 68.5
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1151.3 788 71.6
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1150.6 789 72.9
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1147.1 801 71.5
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1145.6 794 71.5
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1144.8 861 67.5
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1143.6 794 72.2
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1140.9 867 67.6
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1140.6 793 71.0
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1134.4 794 69.9
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1131.7 795 71.7
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1127.1 789 71.0
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1126.3 788 72.7
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1107.8 755 72.6
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1107.4 767 71.7
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1103.6 731 73.3
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1088.2 792 69.9
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1085.9 724 74.2
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1083.6 823 67.3
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 7.2e-310 1067.0 679 77.3
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 9.8e-307 1056.6 792 68.6
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 1.4e-305 1052.7 808 65.2
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 7.0e-305 1050.4 785 67.9
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 1.3e-303 1046.2 789 66.2
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 3.7e-298 1028.1 755 67.5
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 1.3e-290 1003.0 704 69.0
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 1.6e-288 996.1 808 62.6
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 7.8e-288 993.8 794 63.1
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 8.9e-284 980.3 785 63.9
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 2.4e-281 972.2 768 65.1
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 3.0e-279 965.3 807 61.3
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 8.1e-277 957.2 795 61.3
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 1.0e-255 887.1 610 71.6
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 2.5e-246 855.9 665 66.0
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 1.1e-236 823.9 770 58.3
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 3.9e-231 805.4 542 72.1
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 1.7e-205 720.3 513 70.0
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 2.3e-170 603.6 368 79.6
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 3.1e-119 433.7 279 76.3
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 4.8e-104 383.3 285 68.8
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.4e-103 381.7 307 61.2
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 9.4e-92 342.4 223 76.7
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 1.6e-91 341.7 229 77.3
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 4.5e-86 323.6 263 64.6
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 2.2e-80 304.7 177 82.5
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 1.3e-69 268.9 370 43.8
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 6.4e-64 250.0 302 48.0
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 8.6e-61 239.6 209 62.2
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.3e-52 211.1 139 76.3
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 1.8e-42 178.7 117 76.9
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 2.1e-35 155.2 83 85.5
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 1.2e-33 149.4 94 75.5
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 9.3e-31 139.8 176 44.3
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 3.3e-28 131.3 82 79.3
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 2.4e-26 125.2 99 63.6
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.5e-25 122.5 76 76.3
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 7.4e-20 103.6 67 74.6
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 9.6e-20 103.2 63 71.4
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 7.9e-14 83.6 68 60.3
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 1.3e-13 82.8 105 51.4
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.0e-09 68.9 42 81.0
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 2.5e-07 62.0 41 70.7


User provided reference genes

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