Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 0.0e+00 1184.9 584 100.0
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 2.2e-183 646.4 621 55.6
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.9e-179 633.3 621 56.8
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 9.4e-179 630.9 625 56.5
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 2.0e-176 623.2 625 54.9
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 1.8e-174 616.7 624 53.7
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 3.1e-174 615.9 609 56.7
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 7.0e-174 614.8 620 53.7
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 5.9e-173 611.7 625 53.8
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 2.9e-172 609.4 615 53.8
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 2.5e-171 606.3 615 53.7
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 2.8e-170 602.8 622 53.9
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 1.8e-169 600.1 591 54.8
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 1.2e-168 597.4 621 51.5
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 4.4e-168 595.5 623 51.8
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 1.3e-167 594.0 620 51.9
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 4.1e-166 589.0 623 51.0
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 5.4e-166 588.6 623 52.3
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 3.5e-165 585.9 623 51.5
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 5.0e-164 582.0 621 52.0
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 8.6e-164 581.3 621 52.0
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 1.9e-163 580.1 618 51.3
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 1.2e-162 577.4 622 51.1
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 8.0e-162 574.7 624 51.8
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 3.1e-161 572.8 626 49.8
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 5.2e-161 572.0 613 52.4
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 6.8e-161 571.6 631 50.6
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 8.9e-161 571.2 622 51.4
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 8.9e-161 571.2 618 50.2
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 1.5e-160 570.5 618 49.5
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 2.0e-160 570.1 621 51.4
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 2.2e-159 566.6 626 51.6
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 4.9e-159 565.5 621 49.9
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 8.3e-159 564.7 619 49.4
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 1.4e-158 563.9 622 50.8
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 1.4e-158 563.9 619 48.9
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 3.2e-158 562.8 626 49.8
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 4.1e-158 562.4 623 50.7
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 5.4e-158 562.0 620 49.8
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 5.4e-158 562.0 620 49.8
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 1.6e-157 560.5 621 49.4
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 1.0e-156 557.8 621 50.4
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 1.3e-156 557.4 623 49.1
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 1.7e-156 557.0 620 51.0
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 3.0e-156 556.2 610 49.7
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 1.6e-154 550.4 621 49.8
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 4.7e-154 548.9 624 48.7
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 8.0e-154 548.1 654 47.7
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 1.4e-153 547.4 629 49.3
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 1.8e-153 547.0 625 49.1
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 2.3e-153 546.6 620 49.4
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 3.1e-153 546.2 622 49.7
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 4.0e-153 545.8 621 49.6
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 2.6e-152 543.1 622 49.8
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 5.8e-152 542.0 624 48.7
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 6.4e-151 538.5 619 48.3
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 2.4e-150 536.6 627 49.1
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 2.4e-150 536.6 620 48.2
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 9.2e-150 534.6 627 49.0
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 2.3e-148 530.0 619 48.9
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 2.3e-148 530.0 619 47.7
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 3.0e-148 529.6 593 50.6
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 8.6e-148 528.1 621 48.8
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 8.6e-148 528.1 620 47.6
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 3.3e-147 526.2 556 51.1
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 4.3e-147 525.8 619 48.5
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 1.2e-146 524.2 621 48.0
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 2.8e-146 523.1 589 49.9
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 4.7e-146 522.3 621 48.0
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 4.7e-146 522.3 621 47.8
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 6.2e-146 521.9 620 47.7
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 1.1e-145 521.2 621 48.0
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 4.0e-145 519.2 619 47.2
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 6.8e-145 518.5 621 47.8
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 8.9e-145 518.1 503 54.5
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 1.5e-144 517.3 629 47.1
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 2.0e-144 516.9 620 47.4
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 2.6e-144 516.5 619 47.0
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 3.7e-143 512.7 631 47.2
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 3.2e-142 509.6 628 46.2
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 4.1e-142 509.2 619 47.0
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 1.6e-141 507.3 618 45.6
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 2.7e-141 506.5 607 48.1
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 6.0e-141 505.4 618 46.4
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 7.3e-139 498.4 659 46.0
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 4.7e-138 495.7 580 49.0
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.4e-137 494.2 620 45.5
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 1.8e-137 493.8 622 45.2
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 3.1e-137 493.0 520 51.2
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 1.1e-134 484.6 620 44.7
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 5.4e-134 482.3 631 44.1
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 2.1e-133 480.3 592 45.8
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 7.3e-131 471.9 618 43.0
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 9.6e-131 471.5 619 43.1
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 1.8e-129 467.2 619 45.1
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 5.4e-126 455.7 618 42.1
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 2.1e-125 453.8 655 42.7
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 2.3e-124 450.3 591 42.6
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 1.9e-123 447.2 556 45.9
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.5e-123 446.8 642 41.7
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.5e-123 446.8 642 41.7
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.6e-122 444.1 638 41.8
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 6.9e-121 438.7 509 49.3
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 1.4e-113 414.5 480 48.1
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 1.0e-111 408.3 555 43.8
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 5.1e-108 396.0 618 39.3
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 1.6e-101 374.4 594 37.5
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 2.3e-100 370.5 386 50.0
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 2.0e-96 357.5 376 50.3
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 5.5e-94 349.4 635 35.7
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 2.3e-92 344.0 623 36.0
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 4.3e-91 339.7 562 37.2
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 8.8e-84 315.5 490 38.2
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.5e-75 288.1 374 46.3
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 5.3e-73 279.6 377 44.6
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 1.4e-60 238.4 591 32.3
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 6.1e-53 213.0 255 44.3
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 2.6e-51 207.6 452 34.3
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 6.6e-47 193.0 416 35.3
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 2.5e-46 191.0 164 61.0
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 3.5e-40 170.6 236 41.1
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 8.1e-37 159.5 140 57.9
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 6.8e-36 156.4 363 32.2
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 1.5e-35 155.2 243 38.3
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.2e-34 151.4 130 58.5
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 6.8e-28 129.8 158 43.0
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 7.6e-27 126.3 120 54.2
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.7e-26 125.2 549 25.1
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 2.9e-18 97.8 146 37.7
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 3.0e-15 87.8 81 53.1
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 6.6e-15 86.7 96 46.9
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 4.8e-13 80.5 129 38.8
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 2.6e-11 74.7 120 38.3
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 4.9e-10 70.5 113 35.4
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 8.4e-10 69.7 65 53.8
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 5.4e-09 67.0 44 68.2
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 2.3e-07 61.6 51 58.8
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 5.6e-06 57.0 94 40.4
arahy.Tifrunner.gnm1.ann1.E05V9C Arachis hypogaea HOM05D000386 ORTHO05D083937 9.6e-06 56.2 88 39.8


User provided reference genes

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