Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17831 Sapria himalayana HOM05D007686 ORTHO05D009709 1.8e-67 261.2 258 100.0
Manes.13G022000 Manihot esculenta HOM05D007686 ORTHO05D009709 4.6e-23 113.6 258 55.4
Manes.13G021400 Manihot esculenta HOM05D007686 ORTHO05D009709 8.6e-22 109.4 258 53.1
TWI18G1075 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 6.2e-20 103.2 252 75.8
Sabra08G0140000 Salix brachista HOM05D007686 ORTHO05D009709 6.8e-19 99.8 258 47.3
Potri.008G185000 Populus trichocarpa HOM05D007686 ORTHO05D009709 3.4e-18 97.4 81 63.0
Ciclev10031251m.g Citrus clementina HOM05D007686 ORTHO05D009709 1.7e-17 95.1 80 62.5
CiPaw.05G168000 Carya illinoinensis HOM05D007686 ORTHO05D009709 2.9e-17 94.4 81 60.5
Cpa.g.sc33.48 Carica papaya HOM05D007686 ORTHO05D009709 1.4e-16 92.0 81 60.5
FAN12G1967 Fragaria x ananassa HOM05D007686 ORTHO05D009709 1.9e-16 91.7 76 60.5
Gohir.A04G137000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 5.4e-16 90.1 81 56.8
TWI36G0128 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 9.2e-16 89.4 252 62.3
Dinv14741 Davidia involucrata HOM05D007686 ORTHO05D009709 1.6e-15 88.6 81 58.0
RcHm_v2.0_Chr4g0432731 Rosa chinensis HOM05D007686 ORTHO05D009709 1.6e-15 88.6 80 56.2
CANSAT01G2773 Cannabis sativa HOM05D007686 ORTHO05D009709 3.5e-15 87.4 74 62.2
Gohir.D04G180200 Gossypium hirsutum HOM05D007686 ORTHO05D009709 3.5e-15 87.4 81 55.6
HanXRQChr08g0208401 Helianthus annuus HOM05D007686 ORTHO05D009709 4.6e-15 87.0 258 73.3
Phvul.002G258900 Phaseolus vulgaris HOM05D007686 ORTHO05D009709 4.6e-15 87.0 78 59.0
arahy.Tifrunner.gnm1.ann1.BXJH78 Arachis hypogaea HOM05D007686 ORTHO05D009709 7.8e-15 86.3 82 57.3
Eucgr.H02473 Eucalyptus grandis HOM05D007686 ORTHO05D009709 7.8e-15 86.3 253 72.3
Prupe.1G242700 Prunus persica HOM05D007686 ORTHO05D009709 7.8e-15 86.3 77 59.7
PGR119G1810 Punica granatum HOM05D007686 ORTHO05D009709 7.8e-15 86.3 77 57.1
ECA233G6157 Erigeron canadensis HOM05D007686 ORTHO05D009709 3.0e-14 84.3 81 56.8
ClCG05G025900 Citrullus lanatus HOM05D007686 ORTHO05D009709 3.9e-14 84.0 75 56.0
Glyma.05G173932 Glycine max HOM05D007686 ORTHO05D009709 3.9e-14 84.0 78 57.7
Lalb_Chr07g0185471 Lupinus albus HOM05D007686 ORTHO05D009709 3.9e-14 84.0 82 56.1
Thecc.02G263700 Theobroma cacao HOM05D007686 ORTHO05D009709 3.9e-14 84.0 81 55.6
Glyma.08G131100 Glycine max HOM05D007686 ORTHO05D009709 5.0e-14 83.6 78 57.7
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 5.0e-14 83.6 76 56.6
Psat7g058760 Pisum sativum HOM05D007686 ORTHO05D009709 5.0e-14 83.6 82 54.9
Migut.K00622 Erythranthe guttata HOM05D007686 ORTHO05D009709 6.6e-14 83.2 80 48.8
CsaV3_5G030960 Cucumis sativus L. HOM05D007686 ORTHO05D009709 1.1e-13 82.4 74 55.4
Sed0013465 Sechium edule HOM05D007686 ORTHO05D009709 1.5e-13 82.0 73 56.2
SGA_v2.0_scaffold100G29576 Striga asiatica HOM05D007686 ORTHO05D009709 1.5e-13 82.0 81 45.7
CDE05G1633 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 1.9e-13 81.6 73 56.2
Lj4g0016926 Lotus japonicus HOM05D007686 ORTHO05D009709 1.9e-13 81.6 71 60.6
TPR.G6255 Trifolium pratense HOM05D007686 ORTHO05D009709 1.9e-13 81.6 82 54.9
Rhsim12G0039200 Rhododendron simsii HOM05D007686 ORTHO05D009709 5.6e-13 80.1 61 67.2
Medtr8g089700 Medicago truncatula HOM05D007686 ORTHO05D009709 7.3e-13 79.7 74 56.8
CSS0050065 Camellia sinensis var. sinensis HOM05D007686 ORTHO05D009709 1.2e-12 79.0 62 64.5
Solyc06g008190.1 Solanum lycopersicum HOM05D007686 ORTHO05D009709 1.6e-12 78.6 67 58.2
Sopen06g003050 Solanum pennellii HOM05D007686 ORTHO05D009709 1.6e-12 78.6 67 58.2
GSVIVG01000559001 Vitis vinifera HOM05D007686 ORTHO05D009709 1.6e-12 78.6 59 69.5
DCAR_031167 Daucus carota HOM05D002540 ORTHO05D002672 2.1e-12 78.2 69 56.5
MD13G1103100 Malus domestica HOM05D007686 ORTHO05D009709 2.1e-12 78.2 67 62.7
Ca_17785_v3 Cicer arietinum L. HOM05D007686 ORTHO05D009709 6.2e-12 76.6 74 55.4
Nitab4.5_0000067g0230 Nicotiana tabacum HOM05D007686 ORTHO05D009709 1.1e-11 75.9 63 58.7
AUR62011787 Chenopodium quinoa HOM05D007686 ORTHO05D009709 1.8e-11 75.1 62 61.3
Nitab4.5_0001839g0010 Nicotiana tabacum HOM05D007686 ORTHO05D009709 2.3e-11 74.7 63 58.7
MSTRG.555 Avicennia marina HOM05D007686 ORTHO05D009709 5.2e-11 73.6 59 57.6
Gorai.012G173300 Gossypium raimondii HOM05D007686 ORTHO05D009709 5.2e-11 73.6 63 58.7
EL10Ac7g16785 Beta vulgaris HOM05D007686 ORTHO05D009709 2.0e-10 71.6 59 59.3
Hma1.2p1_0815F.1_g222720 Hydrangea macrophylla HOM05D007686 ORTHO05D009709 2.0e-10 71.6 60 61.7
FvH4_4g25420 Fragaria vesca HOM05D007686 ORTHO05D009709 2.6e-10 71.2 43 76.7
Lj3P1060G37 Lonicera japonica HOM05D007686 ORTHO05D009709 3.4e-10 70.9 67 58.2
MD16G1103300 Malus domestica HOM05D007686 ORTHO05D009709 3.4e-10 70.9 59 62.7
Sc06g0009620 Simmondsia chinensis HOM05D007686 ORTHO05D009709 7.5e-10 69.7 51 66.7
Atru.chr11.2166 Acer truncatum HOM05D007686 ORTHO05D009709 3.7e-09 67.4 49 71.4
Zm00001eb331140 Zea mays HOM05D007686 ORTHO05D009709 3.7e-09 67.4 79 44.3
QL03p056833 Quercus lobata HOM05D007686 ORTHO05D009709 4.9e-09 67.0 54 63.0
QL93p1848_0021 Quercus lobata HOM05D007686 ORTHO05D009709 4.9e-09 67.0 54 63.0
THA.LOC104805275 Tarenaya hassleriana HOM05D007686 ORTHO05D009709 4.9e-09 67.0 50 64.0
COL.COLO4_23488 Corchorus olitorius HOM05D007686 ORTHO05D009709 6.4e-09 66.6 47 66.0
PSO724G0460 Papaver somniferum HOM05D007686 ORTHO05D009709 2.4e-08 64.7 53 62.3
Gohir.D02G157000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 7.1e-08 63.2 58 50.0
Os07g0688100 Oryza sativa ssp. japonica HOM05D007686 ORTHO05D009709 9.2e-08 62.8 79 39.2
BcaC05g25091 Brassica carinata HOM05D007686 ORTHO05D009709 1.2e-07 62.4 51 52.9
PSO135G0590 Papaver somniferum HOM05D007686 ORTHO05D009709 1.2e-07 62.4 52 61.5
Aqoxy2G03020 Aquilegia oxysepala HOM05D007686 ORTHO05D009709 2.1e-07 61.6 54 59.3
C05p10280 Brassica napus HOM05D002540 ORTHO05D002672 2.7e-07 61.2 50 54.0
C08p15790 Brassica napus HOM05D002540 ORTHO05D002672 2.7e-07 61.2 55 52.7
BolC5t29774H Brassica oleracea HOM05D007686 ORTHO05D009709 2.7e-07 61.2 50 54.0
BolC8t49205H Brassica oleracea HOM05D002540 ORTHO05D002672 2.7e-07 61.2 55 52.7
A06p08670 Brassica napus HOM05D002540 ORTHO05D002672 4.6e-07 60.5 49 55.1
BraA06t24064Z Brassica rapa HOM05D007686 ORTHO05D009709 4.6e-07 60.5 49 55.1
AL1G24690 Arabidopsis lyrata HOM05D007686 ORTHO05D009709 1.0e-06 59.3 53 56.6
Aa31LG1G1760 Aethionema arabicum HOM05D007686 ORTHO05D009709 1.3e-06 58.9 54 51.9
Carub.0001s1279 Capsella rubella HOM05D007686 ORTHO05D009709 1.7e-06 58.5 53 56.6
Sp1g11590 Schrenkiella parvula HOM05D007686 ORTHO05D009709 1.7e-06 58.5 53 56.6
AT1G13040 Arabidopsis thaliana HOM05D007686 ORTHO05D009709 2.3e-06 58.2 53 56.6
PGSC0003DMG400014696 Solanum tuberosum HOM05D007686 ORTHO05D009709 2.3e-06 58.2 47 59.6
Gohir.A03G132900 Gossypium hirsutum HOM05D007686 ORTHO05D009709 3.9e-06 57.4 47 59.6
TAR383G0079 Trochodendron aralioides HOM05D007686 ORTHO05D009709 5.1e-06 57.0 45 62.2
CARHR013370 Cardamine hirsuta HOM05D007686 ORTHO05D009709 6.6e-06 56.6 54 50.0
Lsat_1_v5_gn_8_152860 Lactuca sativa HOM05D007686 ORTHO05D009709 8.6e-06 56.2 47 57.4


User provided reference genes

Program Settings