Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 1.6e-94 349.4 172 100.0
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 6.3e-14 81.6 113 39.8
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 1.1e-13 80.9 88 46.6
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.1e-13 80.9 88 48.9
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.1e-13 80.9 97 45.4
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 1.4e-13 80.5 86 52.3
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.4e-13 80.5 85 50.6
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 1.8e-13 80.1 77 53.2
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 2.4e-13 79.7 88 45.5
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 2.4e-13 79.7 88 45.5
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.5e-12 77.0 86 51.2
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 2.0e-12 76.6 86 48.8
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 2.6e-12 76.3 100 46.0
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.4e-12 75.9 90 45.6
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 4.5e-12 75.5 90 45.6
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 4.5e-12 75.5 88 42.0
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 4.5e-12 75.5 90 45.6
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 5.9e-12 75.1 88 45.5
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 1.3e-11 73.9 116 37.1
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.3e-11 73.9 89 49.4
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.7e-11 73.6 77 48.1
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 2.2e-11 73.2 79 44.3
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 2.2e-11 73.2 85 48.2
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.2e-11 73.2 79 49.4
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.9e-11 72.8 90 44.4
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 3.8e-11 72.4 87 42.5
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 3.8e-11 72.4 97 40.2
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 5.0e-11 72.0 88 42.0
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 5.0e-11 72.0 87 44.8
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 8.5e-11 71.2 88 42.0
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 8.5e-11 71.2 131 35.1
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 1.1e-10 70.9 89 43.8
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 1.1e-10 70.9 88 43.2
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 1.1e-10 70.9 88 43.2
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 1.1e-10 70.9 79 46.8
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.1e-10 70.9 80 46.2
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 1.4e-10 70.5 79 45.6
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 1.4e-10 70.5 79 46.8
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 1.9e-10 70.1 94 42.6
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.9e-10 70.1 85 47.1
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 2.5e-10 69.7 88 42.0
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 2.5e-10 69.7 88 42.0
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 2.5e-10 69.7 85 47.1
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 3.2e-10 69.3 85 45.9
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 4.2e-10 68.9 88 42.0
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 7.2e-10 68.2 85 43.5
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 7.2e-10 68.2 85 45.9
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 9.4e-10 67.8 112 38.4
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 9.4e-10 67.8 77 41.6
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 9.4e-10 67.8 77 46.8
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 9.4e-10 67.8 85 36.5
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.2e-09 67.4 88 39.8
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.2e-09 67.4 77 48.1
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 1.2e-09 67.4 77 40.3
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 1.6e-09 67.0 77 46.8
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 2.1e-09 66.6 111 35.1
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 2.1e-09 66.6 85 44.7
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 2.7e-09 66.2 114 35.1
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 2.7e-09 66.2 81 45.7
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.7e-09 66.2 76 48.7
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 3.6e-09 65.9 80 45.0
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 3.6e-09 65.9 77 45.5
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 4.7e-09 65.5 77 46.8
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 4.7e-09 65.5 77 46.8
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 4.7e-09 65.5 77 46.8
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 4.7e-09 65.5 77 46.8
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 4.7e-09 65.5 85 42.4
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 4.7e-09 65.5 82 43.9
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 6.1e-09 65.1 78 44.9
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 6.1e-09 65.1 85 44.7
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 6.1e-09 65.1 79 44.3
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 6.1e-09 65.1 78 48.7
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 8.0e-09 64.7 80 45.0
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 8.0e-09 64.7 58 48.3
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 8.0e-09 64.7 77 45.5
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 1.0e-08 64.3 85 43.5
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 1.4e-08 63.9 85 40.0
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 1.4e-08 63.9 88 42.0
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 1.4e-08 63.9 85 42.4
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 1.8e-08 63.5 86 45.3
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.8e-08 63.5 85 42.4
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.8e-08 63.5 82 47.6
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 2.3e-08 63.2 82 41.5
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 3.9e-08 62.4 88 40.9
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 3.9e-08 62.4 133 35.3
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 3.9e-08 62.4 84 39.3
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 3.9e-08 62.4 77 42.9
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 5.2e-08 62.0 85 41.2
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 5.2e-08 62.0 77 44.2
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 5.2e-08 62.0 78 42.3
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 5.2e-08 62.0 78 41.0
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 6.7e-08 61.6 85 36.5
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 8.8e-08 61.2 79 43.0
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 8.8e-08 61.2 91 42.9
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 8.8e-08 61.2 78 41.0
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 8.8e-08 61.2 90 43.3
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.1e-07 60.8 85 40.0
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 1.1e-07 60.8 78 43.6
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 1.5e-07 60.5 47 59.6
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 1.5e-07 60.5 82 43.9
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 2.0e-07 60.1 85 43.5
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 2.0e-07 60.1 145 30.3
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 2.6e-07 59.7 79 38.0
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 3.3e-07 59.3 77 44.2
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 5.7e-07 58.5 79 39.2
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 7.4e-07 58.2 138 34.1
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 7.4e-07 58.2 165 29.1
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 9.7e-07 57.8 77 40.3
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 9.7e-07 57.8 86 41.9
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.3e-06 57.4 77 42.9
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.7e-06 57.0 90 36.7
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.7e-06 57.0 81 42.0
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 2.8e-06 56.2 78 38.5
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 2.8e-06 56.2 92 39.1
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 4.8e-06 55.5 88 38.6
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 6.3e-06 55.1 90 36.7
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 6.3e-06 55.1 75 37.3
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 6.3e-06 55.1 122 35.2
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.2e-06 54.7 76 46.1
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 8.2e-06 54.7 74 41.9
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 8.2e-06 54.7 80 41.2


User provided reference genes

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