Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 8.8e-99 363.6 182 100.0
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.0e-42 176.4 173 56.6
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 1.4e-40 170.2 179 53.6
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 1.4e-40 170.2 174 54.6
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 1.9e-40 169.9 171 56.7
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 2.4e-40 169.5 168 54.8
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 2.4e-40 169.5 153 60.1
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 2.4e-40 169.5 175 53.7
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 5.4e-40 168.3 178 55.6
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 7.1e-40 167.9 176 55.7
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 2.1e-39 166.4 177 50.3
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 6.0e-39 164.9 166 53.0
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.7e-38 163.3 178 51.7
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.7e-38 163.3 177 52.0
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 3.0e-38 162.5 141 61.7
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 5.1e-38 161.8 177 52.5
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 6.6e-38 161.4 189 48.7
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 6.6e-38 161.4 193 49.2
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 4.3e-37 158.7 171 52.6
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 9.5e-37 157.5 167 50.3
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 1.2e-36 157.1 176 50.6
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 2.1e-36 156.4 174 49.4
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 3.6e-36 155.6 179 53.1
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 4.7e-36 155.2 175 52.6
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 1.1e-35 154.1 170 48.8
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 4.0e-35 152.1 175 52.0
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 1.2e-34 150.6 175 49.1
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 1.2e-34 150.6 177 49.7
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 1.5e-34 150.2 180 51.7
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.5e-34 150.2 175 52.0
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 4.4e-34 148.7 179 51.4
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 2.9e-33 146.0 171 50.3
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 2.9e-33 146.0 176 49.4
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 4.9e-33 145.2 180 48.3
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 8.4e-33 144.4 142 55.6
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 8.4e-33 144.4 173 49.1
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 2.4e-32 142.9 178 45.5
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 3.2e-32 142.5 143 52.4
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 7.1e-32 141.4 181 47.5
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 9.2e-32 141.0 178 48.3
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 2.7e-31 139.4 178 48.3
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 3.5e-31 139.0 208 44.2
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 6.0e-31 138.3 177 47.5
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 1.0e-30 137.5 180 48.3
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 2.3e-30 136.3 172 47.1
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 3.0e-30 136.0 178 47.8
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.0e-30 136.0 172 47.7
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 8.6e-30 134.4 173 45.7
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 1.1e-29 134.0 201 44.3
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 1.1e-29 134.0 181 45.3
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.5e-29 133.7 177 46.3
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 2.5e-29 132.9 142 51.4
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 3.3e-29 132.5 177 43.5
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 3.3e-29 132.5 190 46.3
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 4.3e-29 132.1 178 43.8
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 5.6e-29 131.7 177 45.2
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 5.6e-29 131.7 173 47.4
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 7.3e-29 131.3 178 46.6
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 2.8e-28 129.4 182 47.8
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 3.6e-28 129.0 143 51.0
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 3.6e-28 129.0 167 44.9
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.4e-27 127.1 175 44.0
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 1.4e-27 127.1 181 46.4
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 1.4e-27 127.1 175 42.9
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.8e-27 126.7 185 44.3
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 2.4e-27 126.3 178 43.8
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 4.0e-27 125.6 173 44.5
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 4.0e-27 125.6 140 51.4
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 4.0e-27 125.6 143 48.3
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 4.0e-27 125.6 175 45.7
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 6.9e-27 124.8 177 42.4
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 2.0e-26 123.2 175 41.7
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 1.7e-25 120.2 142 48.6
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.9e-25 119.4 177 39.0
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.9e-25 119.4 116 56.9
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 3.8e-25 119.0 173 45.7
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 3.8e-25 119.0 195 42.6
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 1.1e-24 117.5 175 44.6
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.1e-24 117.5 197 41.6
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.9e-24 116.7 222 39.6
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 1.9e-24 116.7 176 42.0
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 3.2e-24 115.9 169 43.2
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 5.4e-24 115.2 177 41.8
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 7.1e-24 114.8 143 47.6
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 7.1e-24 114.8 143 47.6
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 7.1e-24 114.8 144 45.8
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 7.1e-24 114.8 181 44.8
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 9.3e-24 114.4 197 41.1
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 9.3e-24 114.4 118 51.7
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 1.2e-23 114.0 169 40.8
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 1.6e-23 113.6 176 42.0
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 2.7e-23 112.8 141 45.4
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 3.5e-23 112.5 142 45.8
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 6.0e-23 111.7 146 43.8
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 1.0e-22 110.9 142 44.4
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 1.0e-22 110.9 143 44.8
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 5.1e-22 108.6 142 43.0
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 5.1e-22 108.6 142 43.0
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 8.7e-22 107.8 143 44.8
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 8.7e-22 107.8 174 43.1
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 8.7e-22 107.8 168 44.6
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 1.9e-21 106.7 103 55.3
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 5.6e-21 105.1 181 39.2
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 9.6e-21 104.4 139 42.4
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 9.6e-21 104.4 141 43.3
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 1.3e-20 104.0 176 43.2
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 2.8e-20 102.8 221 38.9
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 3.6e-20 102.4 139 43.2
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 4.8e-20 102.1 174 42.0
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 6.2e-20 101.7 176 40.9
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 8.1e-20 101.3 173 42.2
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.4e-19 100.5 112 52.7
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 3.1e-19 99.4 154 39.6
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 4.0e-19 99.0 183 41.0
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 4.0e-19 99.0 137 43.8
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 5.3e-19 98.6 162 37.0
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 6.9e-19 98.2 171 38.6
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 7.6e-18 94.7 181 35.4
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.3e-17 94.0 178 38.8
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 2.2e-17 93.2 162 36.4
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 3.8e-17 92.4 120 42.5
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 3.8e-17 92.4 86 50.0
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 1.1e-16 90.9 168 36.9
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 1.4e-16 90.5 97 50.5
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 3.2e-16 89.4 127 40.2
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 5.4e-16 88.6 91 52.7
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 2.1e-15 86.7 83 50.6
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 4.6e-15 85.5 172 33.7
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 7.9e-15 84.7 140 38.6
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 5.1e-14 82.0 115 47.0
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 1.5e-13 80.5 86 48.8
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.5e-13 80.5 98 39.8
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 2.5e-13 79.7 125 39.2
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.6e-12 77.0 173 33.5
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.1e-12 76.6 173 33.5
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 1.5e-10 70.5 145 33.8
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 9.9e-10 67.8 86 45.3
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.3e-09 67.4 87 41.4
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.7e-09 67.0 86 45.3
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 6.4e-09 65.1 110 38.2
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 8.4e-09 64.7 142 31.0
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.4e-08 63.9 65 50.8
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 1.4e-08 63.9 81 40.7
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 3.2e-08 62.8 78 43.6
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 3.2e-08 62.8 78 43.6
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 9.3e-08 61.2 111 37.8
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 1.3e-06 57.4 105 34.3
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.3e-06 57.4 63 55.6
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 5.1e-06 55.5 60 46.7
Lj2C1008G14 Lonicera japonica HOM05D004112 ORTHO05D004739 6.7e-06 55.1 66 45.5
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 8.7e-06 54.7 88 33.0


User provided reference genes

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