Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17811 Sapria himalayana HOM05D000076 ORTHO05D006537 2.9e-139 498.4 234 100.0
Manes.12G021200 Manihot esculenta HOM05D000076 ORTHO05D006537 5.5e-37 158.7 141 53.2
Ciclev10031037m.g Citrus clementina HOM05D000076 ORTHO05D006537 6.1e-36 155.2 146 52.7
Actinidia15107 Actinidia chinensis HOM05D000076 ORTHO05D006537 2.8e-33 146.4 152 49.3
Potri.010G048500 Populus trichocarpa HOM05D000076 ORTHO05D006537 2.8e-33 146.4 140 54.3
Hma1.2p1_0079F.1_g041100 Hydrangea macrophylla HOM05D000076 ORTHO05D006537 6.3e-33 145.2 145 51.7
Sabra10G0020500 Salix brachista HOM05D003359 ORTHO05D006537 6.3e-33 145.2 140 53.6
COL.COLO4_23484 Corchorus olitorius HOM05D000076 ORTHO05D006537 1.4e-32 144.1 146 53.4
Glyma.18G013400 Glycine max HOM05D000076 ORTHO05D006537 1.4e-32 144.1 146 49.3
Thecc.02G263200 Theobroma cacao HOM05D000076 ORTHO05D006537 1.4e-32 144.1 150 52.7
Dinv14738 Davidia involucrata HOM05D000076 ORTHO05D006537 2.4e-32 143.3 147 50.3
Potri.008G185200 Populus trichocarpa HOM05D000076 ORTHO05D006537 2.4e-32 143.3 139 53.2
GSVIVG01000555001 Vitis vinifera HOM05D000076 ORTHO05D006537 2.4e-32 143.3 145 49.7
Gohir.A04G136900 Gossypium hirsutum HOM05D000076 ORTHO05D006537 4.1e-32 142.5 151 55.0
Sabra08G0140300 Salix brachista HOM05D003359 ORTHO05D006537 4.1e-32 142.5 140 52.9
CiPaw.05G179900 Carya illinoinensis HOM05D000076 ORTHO05D006537 5.3e-32 142.1 145 49.0
DCAR_000288 Daucus carota HOM05D000076 ORTHO05D006537 5.3e-32 142.1 170 45.3
Actinidia37445 Actinidia chinensis HOM05D000076 ORTHO05D006537 7.0e-32 141.7 146 50.7
Dinv15210 Davidia involucrata HOM05D000076 ORTHO05D006537 7.0e-32 141.7 147 50.3
CiPaw.06G066500 Carya illinoinensis HOM05D000076 ORTHO05D006537 9.1e-32 141.4 143 48.3
HanXRQChr17g0539951 Helianthus annuus HOM05D000076 ORTHO05D006537 1.2e-31 141.0 146 52.1
VMungo1383G2989 Vigna mungo HOM05D000076 ORTHO05D006537 1.2e-31 141.0 150 48.7
Gohir.D04G180100 Gossypium hirsutum HOM05D000076 ORTHO05D006537 1.6e-31 140.6 152 55.3
Lj6A814G99 Lonicera japonica HOM05D000076 ORTHO05D006537 1.6e-31 140.6 143 52.4
TAR371G0062 Trochodendron aralioides HOM05D000076 ORTHO05D006537 1.6e-31 140.6 146 50.7
Nn4g22563 Nelumbo nucifera HOM05D000076 ORTHO05D006537 2.0e-31 140.2 147 49.7
Medtr3g086570 Medicago truncatula HOM05D000076 ORTHO05D006537 3.5e-31 139.4 143 51.7
Phvul.001G255600 Phaseolus vulgaris HOM05D000076 ORTHO05D006537 3.5e-31 139.4 148 48.6
Duzib251G0776 Durio zibethinus HOM05D000076 ORTHO05D006537 5.9e-31 138.7 142 52.8
Gohir.A12G145400 Gossypium hirsutum HOM05D000076 ORTHO05D006537 7.7e-31 138.3 146 51.4
vmacro16178 Vaccinium macrocarpon HOM05D000076 ORTHO05D006537 1.0e-30 137.9 145 49.7
Gohir.D12G149900 Gossypium hirsutum HOM05D000076 ORTHO05D006537 1.3e-30 137.5 146 51.4
Gorai.008G161400 Gossypium raimondii HOM05D000076 ORTHO05D006537 1.3e-30 137.5 146 51.4
Gorai.012G173200 Gossypium raimondii HOM05D000076 ORTHO05D006537 1.3e-30 137.5 152 54.6
CSS0033390 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D006537 1.7e-30 137.1 145 46.9
QL03p056977 Quercus lobata HOM05D000076 ORTHO05D006537 2.2e-30 136.7 145 47.6
PGR119G0671 Punica granatum HOM05D000076 ORTHO05D006537 2.9e-30 136.3 146 47.9
Haze_12269 Corylus avellana HOM05D003359 ORTHO05D006537 3.8e-30 136.0 146 47.9
TAR629G2896 Trochodendron aralioides HOM05D000076 ORTHO05D006537 5.0e-30 135.6 146 47.9
HanXRQChr11g0329181 Helianthus annuus HOM05D000076 ORTHO05D006537 8.5e-30 134.8 143 49.0
Glyma.11G243700 Glycine max HOM05D000076 ORTHO05D006537 1.1e-29 134.4 150 47.3
FvH4_4g25921 Fragaria vesca HOM05D000076 ORTHO05D006537 2.5e-29 133.3 149 46.3
FAN17G2736 Fragaria x ananassa HOM05D000076 ORTHO05D006537 4.2e-29 132.5 149 45.6
RcHm_v2.0_Chr4g0433391 Rosa chinensis HOM05D000076 ORTHO05D006537 4.2e-29 132.5 147 47.6
Psat5g091800 Pisum sativum HOM05D000076 ORTHO05D006537 9.4e-29 131.3 147 47.6
Rhsim12G0108500 Rhododendron simsii HOM05D000076 ORTHO05D006537 1.2e-28 131.0 150 47.3
ClCG05G025870 Citrullus lanatus HOM05D000076 ORTHO05D006537 2.1e-28 130.2 148 48.6
CsaV3_5G030990 Cucumis sativus L. HOM05D000076 ORTHO05D006537 2.1e-28 130.2 145 49.7
CAN.G272.5 Capsicum annuum HOM05D000076 ORTHO05D006537 8.0e-28 128.3 154 46.1
MELO3C011938.2 Cucumis melo HOM05D000076 ORTHO05D006537 1.4e-27 127.5 145 48.3
Eucgr.H02475 Eucalyptus grandis HOM05D000076 ORTHO05D006537 1.4e-27 127.5 155 45.8
Prupe.1G247100 Prunus persica HOM05D000076 ORTHO05D006537 1.4e-27 127.5 151 45.7
Ca_25136_v3 Cicer arietinum L. HOM05D000076 ORTHO05D006537 1.8e-27 127.1 145 47.6
TPR.G30528 Trifolium pratense HOM05D000076 ORTHO05D006537 1.8e-27 127.1 141 46.8
MBI09_g06385_MAGBIO Magnolia biondii HOM05D000076 ORTHO05D006537 2.3e-27 126.7 156 44.2
Cc11_g15960 Coffea canephora HOM05D000076 ORTHO05D006537 3.0e-27 126.3 154 46.8
SalBow1G8493 Salvia bowleyana HOM05D000076 ORTHO05D006537 5.2e-27 125.6 172 43.6
Hund25398 Selenicereus undatus HOM05D000076 ORTHO05D006537 5.2e-27 125.6 140 49.3
AL5G15140 Arabidopsis lyrata HOM05D000076 ORTHO05D006537 6.7e-27 125.2 149 48.3
Sed0027991 Sechium edule HOM05D000076 ORTHO05D006537 6.7e-27 125.2 144 47.2
Aqoxy3G01255 Aquilegia oxysepala HOM05D000076 ORTHO05D006537 1.2e-26 124.4 152 48.7
AT3G26370 Arabidopsis thaliana HOM05D000076 ORTHO05D006537 1.2e-26 124.4 150 48.0
Carub.0005s0429 Capsella rubella HOM05D000076 ORTHO05D006537 1.2e-26 124.4 150 48.0
MD13G1098200 Malus domestica HOM05D000076 ORTHO05D006537 2.0e-26 123.6 148 44.6
PSO339G4815 Papaver somniferum HOM05D000076 ORTHO05D006537 2.0e-26 123.6 156 49.4
Aa31LG2G6140 Aethionema arabicum HOM05D003359 ORTHO05D006537 5.7e-26 122.1 155 46.5
PGSC0003DMG400011727 Solanum tuberosum HOM05D000076 ORTHO05D006537 5.7e-26 122.1 155 44.5
CARHR147380 Cardamine hirsuta HOM05D000076 ORTHO05D006537 7.5e-26 121.7 151 45.7
PSO478G4993 Papaver somniferum HOM05D000076 ORTHO05D006537 7.5e-26 121.7 155 49.7
PSO478G1179 Papaver somniferum HOM05D000076 ORTHO05D006537 9.7e-26 121.3 156 48.7
Nitab4.5_0000524g0080 Nicotiana tabacum HOM05D000076 ORTHO05D006537 1.3e-25 120.9 159 43.4
Duzib248G1451 Durio zibethinus HOM05D000076 ORTHO05D006537 1.7e-25 120.6 148 48.0
SGA_v2.0_scaffold63G21740 Striga asiatica HOM05D000076 ORTHO05D006537 2.2e-25 120.2 154 44.8
HPP92_016982 Vanilla planifolia HOM05D000076 ORTHO05D006537 2.2e-25 120.2 167 40.7
Solyc05g013730.3 Solanum lycopersicum HOM05D000076 ORTHO05D006537 3.7e-25 119.4 151 43.7
Sopen05g008650 Solanum pennellii HOM05D000076 ORTHO05D006537 3.7e-25 119.4 151 43.7
Nitab4.5_0001978g0010 Nicotiana tabacum HOM05D000076 ORTHO05D006537 4.8e-25 119.0 154 42.9
CDE04G1448 Ceratophyllum demersum HOM05D000076 ORTHO05D006537 8.2e-25 118.2 158 43.7
PSO017G3552 Papaver somniferum HOM05D000076 ORTHO05D006537 1.4e-24 117.5 162 46.9
Lalb_Chr11g0075541 Lupinus albus HOM05D000076 ORTHO05D006537 2.4e-24 116.7 145 47.6
DCAR_029364 Daucus carota HOM05D000076 ORTHO05D006537 5.3e-24 115.5 143 49.0
A06p42050 Brassica napus HOM05D000076 ORTHO05D006537 7.0e-24 115.2 149 44.3
BraA06t27122Z Brassica rapa HOM05D000076 ORTHO05D006537 7.0e-24 115.2 149 44.3
SGA_v2.0_scaffold87G27061 Striga asiatica HOM05D000076 ORTHO05D006537 9.1e-24 114.8 158 43.0
C07p35430 Brassica napus HOM05D000076 ORTHO05D006537 1.2e-23 114.4 149 44.3
BolC7t44067H Brassica oleracea HOM05D000076 ORTHO05D006537 1.2e-23 114.4 149 44.3
MD16G1099100 Malus domestica HOM05D000076 ORTHO05D006537 1.6e-23 114.0 151 43.0
Sp2g15520 Schrenkiella parvula HOM05D000076 ORTHO05D006537 1.6e-23 114.0 152 44.1
Lj6g0014045 Lotus japonicus HOM05D000076 ORTHO05D006537 3.5e-23 112.8 144 44.4
THA.LOC104825668 Tarenaya hassleriana HOM05D000076 ORTHO05D006537 4.5e-23 112.5 152 47.4
Sc11g0000890 Simmondsia chinensis HOM05D000076 ORTHO05D006537 2.2e-22 110.2 141 46.1
ECA246G3556 Erigeron canadensis HOM05D000076 ORTHO05D006537 1.5e-21 107.5 162 40.7
Thhalv10003920m.g Eutrema salsugineum HOM05D000076 ORTHO05D006537 1.5e-21 107.5 156 43.6
Lsat_1_v5_gn_3_30300 Lactuca sativa HOM05D000076 ORTHO05D006537 1.5e-21 107.5 86 54.7
THA.LOC104805278 Tarenaya hassleriana HOM05D000076 ORTHO05D006537 1.5e-21 107.5 158 41.8
Glyma.15G180200 Glycine max HOM05D000076 ORTHO05D006537 1.9e-21 107.1 82 54.9
TWI18G0661 Tripterygium wilfordii HOM05D000076 ORTHO05D006537 1.9e-21 107.1 125 42.4
Ah.03g133370 Amaranthus hybridus HOM05D000076 ORTHO05D006537 2.5e-21 106.7 148 42.6
ATR0824G261 Amborella trichopoda HOM05D000076 ORTHO05D006537 2.5e-21 106.7 142 43.7
TPR.G15859 Trifolium pratense HOM05D000076 ORTHO05D006537 3.2e-21 106.3 117 44.4
BraA09t35945Z Brassica rapa HOM05D000076 ORTHO05D006537 4.2e-21 105.9 148 41.9
BcaC04g23933 Brassica carinata HOM05D000076 ORTHO05D006537 5.5e-21 105.5 148 41.9
C09p03220 Brassica napus HOM05D000076 ORTHO05D006537 5.5e-21 105.5 148 41.9
BolC9t53247H Brassica oleracea HOM05D000076 ORTHO05D006537 5.5e-21 105.5 148 41.9
Migut.E00214 Erythranthe guttata HOM05D000076 ORTHO05D006537 1.6e-20 104.0 152 39.5
Glyma.15G226850 Glycine max HOM05D000076 ORTHO05D006537 2.1e-20 103.6 82 53.7
Peaxi162Scf00128g00443 Petunia axillaris HOM05D000076 ORTHO05D006537 4.7e-20 102.4 156 41.7
TWI75G1343 Tripterygium wilfordii HOM05D000076 ORTHO05D006537 4.7e-20 102.4 127 41.7
CSS0034011 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D006537 1.8e-19 100.5 61 67.2
EL10Ac6g13874 Beta vulgaris HOM05D000076 ORTHO05D006537 4.0e-19 99.4 153 38.6
AUR62024238 Chenopodium quinoa HOM05D000076 ORTHO05D006537 5.2e-19 99.0 148 39.9
Sed0007549 Sechium edule HOM05D000076 ORTHO05D006537 5.2e-19 99.0 134 43.3
A09p03030 Brassica napus HOM05D000076 ORTHO05D006537 8.8e-19 98.2 148 39.2
Oeu057547.1 Olea europaea HOM05D000076 ORTHO05D006537 2.6e-18 96.7 81 51.9
SEGI_23169 Sequoiadendron giganteum HOM05D000076 ORTHO05D006537 6.3e-17 92.0 111 42.3
Zm00001eb232610 Zea mays HOM05D000076 ORTHO05D006537 5.4e-16 89.0 164 36.0
Os02g0158800 Oryza sativa ssp. japonica HOM05D000076 ORTHO05D006537 1.6e-15 87.4 83 47.0
Os06g0687400 Oryza sativa ssp. japonica HOM05D000076 ORTHO05D006537 1.1e-13 81.3 68 50.0
unitig_62.g23663 Utricularia gibba HOM05D000076 ORTHO05D006537 4.7e-12 75.9 42 73.8
unitig_52.g17180 Utricularia gibba HOM05D000076 ORTHO05D006537 5.2e-11 72.4 46 69.6
SMO118G0203 Selaginella moellendorffii HOM05D000076 ORTHO05D006537 2.0e-10 70.5 47 55.3
Zm00001eb225920 Zea mays HOM05D000076 ORTHO05D006537 2.0e-10 70.5 68 45.6
CANSAT01G0511 Cannabis sativa HOM05D003359 ORTHO05D004472 1.1e-08 64.7 99 40.4
AUR62005502 Chenopodium quinoa HOM05D000076 ORTHO05D006537 1.8e-08 63.9 148 35.1
AagrBONN_evm.TU.Sc2ySwM_362.575 Anthoceros agrestis HOM05D000076 ORTHO05D006537 2.4e-08 63.5 68 45.6
Cpa.g.sc4610.1 Carica papaya HOM05D000076 ORTHO05D006537 3.5e-07 59.7 103 35.0


User provided reference genes

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