Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17754 Sapria himalayana HOM05D006585 ORTHO05D007798 9.1e-122 440.3 225 100.0
Sabra10G0023300 Salix brachista HOM05D000740 ORTHO05D003236 2.2e-27 126.7 197 39.6
Thecc.02G257200 Theobroma cacao HOM05D006585 ORTHO05D007798 6.7e-24 115.2 218 32.1
Manes.13G025900 Manihot esculenta HOM05D006585 ORTHO05D007798 8.8e-24 114.8 217 35.0
Potri.010G044800 Populus trichocarpa HOM05D006585 ORTHO05D007798 1.1e-23 114.4 196 36.7
TWI75G0333 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 2.0e-23 113.6 218 35.3
Cfa009198 Carpinus fangiana HOM05D006585 ORTHO05D007798 4.5e-20 102.4 206 34.5
COL.COLO4_24245 Corchorus olitorius HOM05D006585 ORTHO05D002520 1.7e-19 100.5 218 29.8
Gorai.005G179800 Gossypium raimondii HOM05D006585 ORTHO05D007798 1.7e-19 100.5 211 31.8
Gohir.D02G159700 Gossypium hirsutum HOM05D006585 ORTHO05D007798 2.9e-19 99.8 218 31.2
Cpa.g.sc33.3 Carica papaya HOM05D006585 ORTHO05D007798 6.5e-19 98.6 217 31.3
CiPaw.05G183700 Carya illinoinensis HOM05D006585 ORTHO05D007798 8.5e-19 98.2 206 33.5
TWI36G0027 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 1.4e-18 97.4 199 34.7
FvH4_4g25900 Fragaria vesca HOM05D006585 ORTHO05D007798 1.9e-18 97.1 218 31.2
FAN12G1097 Fragaria x ananassa HOM05D006585 ORTHO05D007798 2.5e-18 96.7 218 30.7
FAN12G1379 Fragaria x ananassa HOM05D006585 ORTHO05D007798 2.5e-18 96.7 218 30.7
Duzib248G0505 Durio zibethinus HOM05D006585 ORTHO05D007798 3.2e-18 96.3 218 29.4
FAN22G0568 Fragaria x ananassa HOM05D006585 ORTHO05D007798 4.2e-18 95.9 218 30.7
FAN17G2552 Fragaria x ananassa HOM05D006585 ORTHO05D007798 9.4e-18 94.7 218 30.3
FAN07G1571 Fragaria x ananassa HOM05D006585 ORTHO05D007798 2.1e-17 93.6 218 29.4
ClCG08G017740 Citrullus lanatus HOM05D006585 ORTHO05D007798 2.7e-17 93.2 211 32.2
MD13G1097900 Malus domestica HOM05D006585 ORTHO05D007798 6.1e-17 92.0 199 32.2
Gohir.A03G136500 Gossypium hirsutum HOM05D006585 ORTHO05D007798 1.0e-16 91.3 191 30.9
RcHm_v2.0_Chr4g0433351 Rosa chinensis HOM05D006585 ORTHO05D007798 1.0e-16 91.3 218 28.9
Thhalv10007956m.g Eutrema salsugineum HOM05D006585 ORTHO05D007798 3.0e-16 89.7 217 29.5
Sp1g09410 Schrenkiella parvula HOM05D006585 ORTHO05D007798 5.1e-16 89.0 223 30.0
arahy.Tifrunner.gnm1.ann1.QD46ZG Arachis hypogaea HOM05D006585 ORTHO05D007798 3.3e-15 86.3 225 31.6
Prupe.1G247500 Prunus persica HOM05D006585 ORTHO05D007798 4.4e-15 85.9 221 29.0
QL03p058556 Quercus lobata HOM05D006585 ORTHO05D007798 4.4e-15 85.9 188 33.5
arahy.Tifrunner.gnm1.ann1.I6QGYY Arachis hypogaea HOM05D006585 ORTHO05D007798 5.7e-15 85.5 225 31.1
Sed0016045 Sechium edule HOM05D006585 ORTHO05D007798 1.3e-14 84.3 218 29.8
AL1G21590 Arabidopsis lyrata HOM05D006585 ORTHO05D007798 2.2e-14 83.6 217 28.6
Medtr8g069560 Medicago truncatula HOM05D006585 ORTHO05D007798 2.2e-14 83.6 223 31.4
Medtr2g079800 Medicago truncatula HOM05D006585 ORTHO05D007798 3.7e-14 82.8 212 30.7
CANSAT01G1755 Cannabis sativa HOM05D006585 ORTHO05D007798 6.3e-14 82.0 221 30.3
Glyma.18G143200 Glycine max HOM05D006585 ORTHO05D007798 6.3e-14 82.0 217 29.0
Dinv24805 Davidia involucrata HOM05D006585 ORTHO05D007798 8.2e-14 81.6 218 28.9
Lj4g0008721 Lotus japonicus HOM05D006585 ORTHO05D007798 8.2e-14 81.6 227 30.8
BcaC07g41800 Brassica carinata HOM05D006585 ORTHO05D007798 1.4e-13 80.9 220 28.6
Carub.0001s1022 Capsella rubella HOM05D006585 ORTHO05D007798 1.4e-13 80.9 221 29.4
CSS0026295 Camellia sinensis var. sinensis HOM05D006585 ORTHO05D007798 1.8e-13 80.5 202 31.2
C08p48610 Brassica napus HOM05D006585 ORTHO05D007798 3.1e-13 79.7 214 29.0
BolC8t52400H Brassica oleracea HOM05D006585 ORTHO05D007798 3.1e-13 79.7 214 29.0
AT1G10710 Arabidopsis thaliana HOM05D006585 ORTHO05D007798 7.0e-13 78.6 221 27.6
Phvul.003G063800 Phaseolus vulgaris HOM05D006585 ORTHO05D007798 7.0e-13 78.6 220 30.0
Actinidia27800 Actinidia chinensis HOM05D006585 ORTHO05D007798 1.2e-12 77.8 197 31.0
BcaB08g37368 Brassica carinata HOM05D006585 ORTHO05D007798 1.6e-12 77.4 221 28.5
VMungo0251G2192 Vigna mungo HOM05D006585 ORTHO05D007798 1.6e-12 77.4 200 31.0
Ca_22577_v3 Cicer arietinum L. HOM05D006585 ORTHO05D007798 5.9e-12 75.5 203 29.1
TAR371G0523 Trochodendron aralioides HOM05D006585 ORTHO05D007798 1.3e-11 74.3 217 31.3
BraA09t41832Z Brassica rapa HOM05D006585 ORTHO05D007798 3.8e-11 72.8 221 27.1
Lj6C811T17 Lonicera japonica HOM05D006585 ORTHO05D007798 3.8e-11 72.8 206 31.1
A09p64570 Brassica napus HOM05D006585 ORTHO05D007798 5.0e-11 72.4 203 28.1
Lsat_1_v5_gn_3_28841 Lactuca sativa HOM05D006585 ORTHO05D007798 8.5e-11 71.6 46 63.0
GSVIVG01007676001 Vitis vinifera HOM05D006585 ORTHO05D007798 1.5e-10 70.9 198 27.8
Prupe.1G247600 Prunus persica HOM05D006585 ORTHO05D007798 5.5e-10 68.9 54 53.7
Psat1g023160 Pisum sativum HOM05D006585 ORTHO05D007798 7.2e-10 68.6 57 56.1
CARHR010890 Cardamine hirsuta HOM05D006585 ORTHO05D007798 9.4e-10 68.2 178 26.4
Oeu049180.1 Olea europaea HOM05D006585 ORTHO05D007798 1.2e-09 67.8 54 55.6
THA.LOC104823651 Tarenaya hassleriana HOM05D006585 ORTHO05D007798 3.6e-09 66.2 46 60.9
Aa31LG1G4120 Aethionema arabicum HOM05D006585 ORTHO05D007798 6.1e-09 65.5 226 26.1
SalBow8G1297 Salvia bowleyana HOM05D006585 ORTHO05D007798 6.1e-09 65.5 45 57.8
Thecc.03G022200 Theobroma cacao HOM05D006585 ORTHO05D007798 6.1e-09 65.5 197 26.4
Nitab4.5_0002552g0050 Nicotiana tabacum HOM05D006585 ORTHO05D007798 8.0e-09 65.1 54 53.7
DCAR_031138 Daucus carota HOM05D006585 ORTHO05D007798 1.0e-08 64.7 46 58.7
Nitab4.5_0002255g0100 Nicotiana tabacum HOM05D006585 ORTHO05D007798 1.0e-08 64.7 49 57.1
Peaxi162Scf00128g00033 Petunia axillaris HOM05D006585 ORTHO05D007798 1.0e-08 64.7 46 60.9
MD13G1097800 Malus domestica HOM05D006585 ORTHO05D007798 1.4e-08 64.3 48 62.5
ECA246G2324 Erigeron canadensis HOM05D000225 ORTHO05D002520 1.8e-08 63.9 46 56.5
MBI10_g00733_MAGBIO Magnolia biondii HOM05D006585 ORTHO05D007798 1.8e-08 63.9 50 58.0
SGA_v2.0_scaffold87G27084 Striga asiatica HOM05D006585 ORTHO05D007798 3.0e-08 63.2 42 61.9
HanXRQChr17g0539731 Helianthus annuus HOM05D006585 ORTHO05D007798 6.7e-08 62.0 78 38.5
MBI16_g23844_MAGBIO Magnolia biondii HOM05D006585 ORTHO05D007798 2.0e-07 60.5 43 62.8
Solyc05g013360.3 Solanum lycopersicum HOM05D006585 ORTHO05D007798 2.0e-07 60.5 46 54.3
Sopen05g008150 Solanum pennellii HOM05D006585 ORTHO05D007798 2.0e-07 60.5 46 54.3
Atru.chr11.2118 Acer truncatum HOM05D006585 ORTHO05D007798 2.6e-07 60.1 103 38.8
Glyma.08G283200 Glycine max HOM05D006585 ORTHO05D007798 2.6e-07 60.1 48 56.2
Atru.chr11.2134 Acer truncatum HOM05D006585 ORTHO05D007798 3.3e-07 59.7 103 38.8
Dinv20613 Davidia involucrata HOM05D006585 ORTHO05D007798 3.3e-07 59.7 199 27.6
Sc04g0009420 Simmondsia chinensis HOM05D006585 ORTHO05D007798 4.4e-07 59.3 42 57.1
AUR62024297 Chenopodium quinoa HOM05D006585 ORTHO05D007798 7.5e-07 58.5 46 54.3
PSO832G2940 Papaver somniferum HOM05D006585 ORTHO05D007798 7.5e-07 58.5 57 47.4
Aqoxy5G03808 Aquilegia oxysepala HOM05D006585 ORTHO05D007798 9.7e-07 58.2 54 50.0
EL10Ac6g13783 Beta vulgaris HOM05D006585 ORTHO05D007798 9.7e-07 58.2 46 52.2
TAR629G0056 Trochodendron aralioides HOM05D006585 ORTHO05D007798 2.2e-06 57.0 99 43.4
Migut.E00193 Erythranthe guttata HOM05D006585 ORTHO05D007798 4.8e-06 55.8 54 44.4


User provided reference genes

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