Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 1.4e-147 526.6 328 100.0
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 9.3e-91 337.8 322 73.3
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.5e-88 330.5 297 76.4
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.9e-88 330.1 297 76.4
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 9.0e-86 321.2 292 76.4
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 1.5e-85 320.5 301 75.4
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.7e-84 317.0 280 76.1
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 4.9e-84 315.5 297 74.7
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 4.9e-84 315.5 298 74.5
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 4.9e-84 315.5 296 75.0
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 8.4e-84 314.7 285 77.2
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 8.4e-84 314.7 298 73.5
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.4e-83 313.9 285 77.2
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 1.4e-83 313.9 290 74.5
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 1.4e-83 313.9 321 71.3
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 1.9e-83 313.5 285 75.8
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 1.9e-83 313.5 285 75.8
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 4.2e-83 312.4 302 70.9
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 7.1e-83 311.6 285 76.1
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 9.3e-83 311.2 296 73.0
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 1.6e-82 310.5 307 71.3
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 2.1e-82 310.1 283 75.6
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 2.1e-82 310.1 289 75.1
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 2.1e-82 310.1 283 76.7
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 3.5e-82 309.3 299 73.2
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 1.3e-81 307.4 294 72.8
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 2.3e-81 306.6 297 73.4
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 3.0e-81 306.2 300 72.7
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 3.9e-81 305.8 309 70.6
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 5.1e-81 305.4 306 71.6
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 8.7e-81 304.7 309 71.8
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 4.3e-80 302.4 285 74.0
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 4.3e-80 302.4 299 72.9
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 7.4e-80 301.6 297 72.1
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.6e-79 300.4 304 71.1
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.6e-79 300.4 297 70.7
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.6e-79 300.4 299 72.6
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 2.8e-79 299.7 285 72.6
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 3.7e-79 299.3 285 73.3
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 6.2e-79 298.5 299 72.2
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 8.1e-79 298.1 278 75.5
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 1.4e-78 297.4 292 71.9
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 2.4e-78 296.6 290 71.0
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 2.4e-78 296.6 285 72.3
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 2.4e-78 296.6 277 75.1
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 3.1e-78 296.2 278 75.2
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.1e-78 296.2 287 72.5
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 3.1e-78 296.2 286 73.4
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 4.0e-78 295.8 298 71.8
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 9.0e-78 294.7 278 74.8
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 1.2e-77 294.3 298 69.8
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 1.5e-77 293.9 323 66.3
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 2.0e-77 293.5 304 67.4
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 2.6e-77 293.1 305 70.2
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 2.6e-77 293.1 278 74.5
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 3.4e-77 292.7 286 73.8
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 1.3e-76 290.8 288 73.3
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.3e-76 290.8 297 67.7
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 2.2e-76 290.0 295 69.8
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 3.8e-76 289.3 338 49.1
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 4.9e-76 288.9 278 72.7
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 4.9e-76 288.9 280 72.5
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 8.4e-76 288.1 295 70.2
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.4e-75 287.3 275 73.5
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 1.9e-75 287.0 279 71.7
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 2.5e-75 286.6 280 73.6
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 7.1e-75 285.0 298 69.1
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 9.3e-75 284.6 295 72.2
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 9.3e-75 284.6 317 65.0
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 2.1e-74 283.5 291 62.9
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 2.7e-74 283.1 301 69.8
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 4.6e-74 282.3 278 71.6
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 4.6e-74 282.3 326 64.4
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 7.9e-74 281.6 287 69.7
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 2.3e-73 280.0 304 65.5
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 1.1e-72 277.7 284 71.8
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 1.9e-72 276.9 279 65.9
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 2.5e-72 276.6 297 68.7
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 1.3e-71 274.2 283 68.9
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 1.6e-71 273.9 284 65.8
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 3.1e-70 269.6 294 66.7
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.2e-69 267.7 203 66.5
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 7.6e-69 265.0 180 74.4
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 1.3e-68 264.2 284 60.6
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 1.3e-68 264.2 174 72.4
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.6e-66 257.3 176 71.0
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 6.1e-66 255.4 285 65.3
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 6.1e-66 255.4 330 60.6
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 1.0e-65 254.6 290 67.9
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.0e-65 254.6 167 73.1
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 2.3e-65 253.4 285 66.3
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.3e-64 249.6 167 71.9
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 5.7e-64 248.8 274 66.4
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 1.6e-63 247.3 277 67.5
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 2.2e-63 246.9 165 70.9
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 2.2e-63 246.9 300 63.7
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 4.8e-63 245.7 296 56.8
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.8e-62 243.8 313 62.3
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 1.5e-61 240.7 304 61.8
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 3.4e-61 239.6 165 70.9
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.2e-60 236.9 304 61.2
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 6.5e-60 235.3 309 58.9
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 2.5e-59 233.4 289 64.0
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 4.2e-59 232.6 279 58.4
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 4.6e-58 229.2 237 73.0
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 6.1e-58 228.8 296 62.2
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 1.0e-57 228.0 315 43.5
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.9e-57 226.1 331 40.2
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 9.7e-56 221.5 304 58.9
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 8.2e-55 218.4 353 53.5
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.0e-52 209.1 306 57.2
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 5.5e-51 205.7 292 58.6
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 2.9e-44 183.3 149 63.8
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 3.2e-43 179.9 194 77.3
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 1.2e-42 177.9 194 74.7
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 2.7e-42 176.8 262 58.8
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 6.3e-39 165.6 141 55.3
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 6.3e-39 165.6 179 51.4
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 1.1e-38 164.9 124 64.5
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 2.7e-37 160.2 241 61.4
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 7.2e-35 152.1 279 52.0
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 8.8e-33 145.2 126 52.4
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 1.4e-30 137.9 286 49.7
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.4e-30 136.0 172 44.2
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 7.0e-30 135.6 171 43.9
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.5e-27 127.9 171 42.7
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.0e-24 117.5 142 83.1
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 4.9e-23 112.8 86 59.3
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 7.0e-22 109.0 152 75.7
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 1.7e-20 104.4 107 47.7
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 9.5e-19 98.6 127 83.5
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 2.0e-16 90.9 133 61.7
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 3.4e-16 90.1 84 53.6
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.4e-16 90.1 81 54.3
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 1.6e-13 81.3 64 64.1
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.6e-12 75.9 122 79.5
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.6e-10 71.2 41 70.7
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 1.4e-09 68.2 43 65.1
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 6.4e-07 59.3 54 50.0
FAN09G1413 Fragaria x ananassa HOM05D036052 ORTHO05D006215 1.1e-06 58.5 38 63.2
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 1.9e-06 57.8 56 51.8
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 5.4e-06 56.2 49 59.2


User provided reference genes

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