Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17487 Sapria himalayana HOM05D003320 ORTHO05D003941 2.7e-89 332.0 177 100.0
Manes.14G087000 Manihot esculenta HOM05D003320 ORTHO05D003941 7.9e-20 101.3 64 71.9
Cpa.g.sc94.74 Carica papaya HOM05D003320 ORTHO05D003941 3.3e-18 95.9 71 62.0
Manes.06G082800 Manihot esculenta HOM05D003320 ORTHO05D003941 3.3e-18 95.9 64 67.2
Eucgr.B00616 Eucalyptus grandis HOM05D003320 ORTHO05D003941 2.8e-17 92.8 62 62.9
Potri.015G059400 Populus trichocarpa HOM05D003320 ORTHO05D003941 1.4e-16 90.5 63 65.1
Sabra15G0084900 Salix brachista HOM05D003320 ORTHO05D003941 1.8e-16 90.1 63 65.1
FAN08G2691 Fragaria x ananassa HOM05D003320 ORTHO05D003941 2.4e-16 89.7 69 62.3
Haze_07745 Corylus avellana HOM05D003320 ORTHO05D003941 3.1e-16 89.4 69 60.9
DCAR_023161 Daucus carota HOM05D003320 ORTHO05D003941 3.1e-16 89.4 63 61.9
RcHm_v2.0_Chr7g0183311 Rosa chinensis HOM05D003320 ORTHO05D003941 3.1e-16 89.4 66 65.2
Sabra12G0045000 Salix brachista HOM05D003320 ORTHO05D003941 3.1e-16 89.4 63 65.1
VMungo1215G1878 Vigna mungo HOM05D003320 ORTHO05D003941 3.1e-16 89.4 63 57.1
Thhalv10019464m.g Eutrema salsugineum HOM05D003320 ORTHO05D003941 4.1e-16 89.0 68 58.8
Phvul.003G183500 Phaseolus vulgaris HOM05D003320 ORTHO05D003941 4.1e-16 89.0 63 57.1
Potri.012G062100 Populus trichocarpa HOM05D003320 ORTHO05D003941 4.1e-16 89.0 63 65.1
CiPaw.11G055500 Carya illinoinensis HOM05D003320 ORTHO05D003941 6.9e-16 88.2 68 61.8
QL10p019950 Quercus lobata HOM05D003320 ORTHO05D003941 6.9e-16 88.2 71 57.7
AT1G18610 Arabidopsis thaliana HOM05D003320 ORTHO05D003941 9.0e-16 87.8 68 60.3
Cfa019354 Carpinus fangiana HOM05D003320 ORTHO05D003941 9.0e-16 87.8 69 59.4
Gohir.A03G070900 Gossypium hirsutum HOM05D003320 ORTHO05D003941 9.0e-16 87.8 66 57.6
Duzib205G0721 Durio zibethinus HOM05D003320 ORTHO05D003941 1.5e-15 87.0 65 58.5
CANSAT25G3609 Cannabis sativa HOM05D003320 ORTHO05D003941 2.0e-15 86.7 68 58.8
CARHR019230 Cardamine hirsuta HOM05D003320 ORTHO05D003941 2.0e-15 86.7 68 60.3
FvH4_5g13650 Fragaria vesca HOM05D003320 ORTHO05D003941 2.0e-15 86.7 68 60.3
FAN18G0159 Fragaria x ananassa HOM05D003320 ORTHO05D003941 2.0e-15 86.7 68 60.3
Gohir.D03G097300 Gossypium hirsutum HOM05D003320 ORTHO05D003941 2.0e-15 86.7 63 60.3
Gorai.003G102300 Gossypium raimondii HOM05D003320 ORTHO05D003941 2.0e-15 86.7 63 60.3
COL.COLO4_24318 Corchorus olitorius HOM05D003320 ORTHO05D003941 2.6e-15 86.3 65 61.5
FAN13G0636 Fragaria x ananassa HOM05D003320 ORTHO05D003941 2.6e-15 86.3 68 60.3
AT1G74150 Arabidopsis thaliana HOM05D003320 ORTHO05D003941 3.4e-15 85.9 68 58.8
Ca_21762_v3 Cicer arietinum L. HOM05D003320 ORTHO05D003941 3.4e-15 85.9 63 58.7
Eucgr.B00621 Eucalyptus grandis HOM05D003320 ORTHO05D003941 3.4e-15 85.9 65 60.0
Sp1g16580 Schrenkiella parvula HOM05D003320 ORTHO05D003941 4.5e-15 85.5 68 61.8
ClCG06G015540 Citrullus lanatus HOM05D003320 ORTHO05D003941 5.8e-15 85.1 63 60.3
Gohir.A12G183500 Gossypium hirsutum HOM05D003320 ORTHO05D003941 5.8e-15 85.1 66 60.6
Psat4g047520 Pisum sativum HOM05D003320 ORTHO05D003941 5.8e-15 85.1 64 59.4
Thecc.03G104500 Theobroma cacao HOM05D003320 ORTHO05D003941 5.8e-15 85.1 65 58.5
TWI81G0870 Tripterygium wilfordii HOM05D003320 ORTHO05D003941 5.8e-15 85.1 65 58.5
Thhalv10007275m.g Eutrema salsugineum HOM05D003320 ORTHO05D003941 7.6e-15 84.7 68 58.8
Carub.0001s1824 Capsella rubella HOM05D003320 ORTHO05D003941 1.0e-14 84.3 68 58.8
Eucgr.B00619 Eucalyptus grandis HOM05D003320 ORTHO05D003941 1.0e-14 84.3 65 58.5
ATR0827G154 Amborella trichopoda HOM05D003320 ORTHO05D003941 1.3e-14 84.0 71 57.7
Dinv22765 Davidia involucrata HOM05D003320 ORTHO05D003941 1.7e-14 83.6 63 58.7
Gohir.D12G186400 Gossypium hirsutum HOM05D003320 ORTHO05D003941 1.7e-14 83.6 66 60.6
Gorai.008G199800 Gossypium raimondii HOM05D003320 ORTHO05D003941 1.7e-14 83.6 66 60.6
GSVIVG01008118001 Vitis vinifera HOM05D003320 ORTHO05D003941 1.7e-14 83.6 63 60.3
Ciclev10019467m.g Citrus clementina HOM05D003320 ORTHO05D003941 2.2e-14 83.2 67 59.7
TWI60G0048 Tripterygium wilfordii HOM05D003320 ORTHO05D003941 2.2e-14 83.2 63 58.7
TWI60G1142 Tripterygium wilfordii HOM05D003320 ORTHO05D003941 2.2e-14 83.2 63 58.7
BcaC05g25756 Brassica carinata HOM05D003320 ORTHO05D003941 2.9e-14 82.8 69 58.0
A06p14720 Brassica napus HOM05D003320 ORTHO05D003941 2.9e-14 82.8 69 58.0
C05p16870 Brassica napus HOM05D003320 ORTHO05D003941 2.9e-14 82.8 69 58.0
BraA06t24596Z Brassica rapa HOM05D003320 ORTHO05D003941 2.9e-14 82.8 69 58.0
THA.LOC104813890 Tarenaya hassleriana HOM05D003320 ORTHO05D003941 2.9e-14 82.8 68 58.8
Eucgr.B00617 Eucalyptus grandis HOM05D003320 ORTHO05D003941 3.8e-14 82.4 65 56.9
MD14G1213900 Malus domestica HOM05D003320 ORTHO05D003941 3.8e-14 82.4 71 56.3
THA.LOC104808040 Tarenaya hassleriana HOM05D003320 ORTHO05D003941 3.8e-14 82.4 65 60.0
TPR.G1978 Trifolium pratense HOM05D003320 ORTHO05D003941 3.8e-14 82.4 63 55.6
MELO3C017236.2 Cucumis melo HOM05D003320 ORTHO05D003941 5.0e-14 82.0 65 56.9
CsaV3_1G003060 Cucumis sativus L. HOM05D003320 ORTHO05D003941 5.0e-14 82.0 65 56.9
BolC5t30390H Brassica oleracea HOM05D003320 ORTHO05D003941 6.5e-14 81.6 69 58.0
Cc00_g03390 Coffea canephora HOM05D003320 ORTHO05D003941 6.5e-14 81.6 63 54.0
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 8.4e-14 81.3 68 55.9
BcaC08g46820 Brassica carinata HOM05D003320 ORTHO05D003941 1.1e-13 80.9 68 55.9
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 1.1e-13 80.9 68 55.9
Duzib068G0415 Durio zibethinus HOM05D000874 ORTHO05D003941 1.1e-13 80.9 65 56.9
Lj9A439T50 Lonicera japonica HOM05D003320 ORTHO05D003941 1.1e-13 80.9 65 55.4
MBI16_g10850_MAGBIO Magnolia biondii HOM05D003320 ORTHO05D003941 1.1e-13 80.9 69 50.7
Medtr4g109680 Medicago truncatula HOM05D003320 ORTHO05D003941 1.1e-13 80.9 63 54.0
Aa31LG7G3370 Aethionema arabicum HOM05D003320 ORTHO05D003941 1.4e-13 80.5 68 55.9
DCAR_011563 Daucus carota HOM05D003320 ORTHO05D003941 1.4e-13 80.5 63 55.6
Aqoxy3G03660 Aquilegia oxysepala HOM05D003320 ORTHO05D003941 1.9e-13 80.1 69 52.2
CARHR067300 Cardamine hirsuta HOM05D003320 ORTHO05D003941 1.9e-13 80.1 68 55.9
BcaB07g31880 Brassica carinata HOM05D003320 ORTHO05D003941 2.5e-13 79.7 68 52.9
A08p30320 Brassica napus HOM05D003320 ORTHO05D003941 2.5e-13 79.7 68 60.3
PGR083G0488 Punica granatum HOM05D003320 ORTHO05D003941 2.5e-13 79.7 63 60.3
arahy.Tifrunner.gnm1.ann1.16QCS4 Arachis hypogaea HOM05D003320 ORTHO05D003941 3.2e-13 79.3 63 54.0
arahy.Tifrunner.gnm1.ann1.XBA6AL Arachis hypogaea HOM05D003320 ORTHO05D003941 3.2e-13 79.3 63 54.0
Glyma.06G204800 Glycine max HOM05D003320 ORTHO05D003941 4.2e-13 79.0 63 58.7
Hma1.2p1_0060F.1_g032950 Hydrangea macrophylla HOM05D003320 ORTHO05D003941 4.2e-13 79.0 64 53.1
PSO017G6858 Papaver somniferum HOM05D003320 ORTHO05D003941 4.2e-13 79.0 67 53.7
PSO478G2958 Papaver somniferum HOM05D003320 ORTHO05D003941 4.2e-13 79.0 67 53.7
Prupe.5G207100 Prunus persica HOM05D003320 ORTHO05D003941 4.2e-13 79.0 69 55.1
AL2G34050 Arabidopsis lyrata HOM05D003320 ORTHO05D003941 5.5e-13 78.6 68 55.9
Glyma.04G160700 Glycine max HOM05D003320 ORTHO05D003941 5.5e-13 78.6 63 58.7
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 7.2e-13 78.2 68 54.4
C08p18770 Brassica napus HOM05D003320 ORTHO05D003941 7.2e-13 78.2 68 58.8
BraA08t34965Z Brassica rapa HOM05D003320 ORTHO05D003941 7.2e-13 78.2 68 58.8
CDE04G0470 Ceratophyllum demersum HOM05D003320 ORTHO05D003941 7.2e-13 78.2 43 72.1
Eucgr.B00620 Eucalyptus grandis HOM05D003320 ORTHO05D003941 7.2e-13 78.2 65 55.4
BolC6t39864H Brassica oleracea HOM05D003320 ORTHO05D003941 9.3e-13 77.8 67 53.7
BolC8t49503H Brassica oleracea HOM05D003320 ORTHO05D003941 9.3e-13 77.8 68 58.8
CDE06G2715 Ceratophyllum demersum HOM05D003320 ORTHO05D003941 9.3e-13 77.8 41 75.6
TAR629G1284 Trochodendron aralioides HOM05D003320 ORTHO05D003941 9.3e-13 77.8 69 49.3
Glyma.05G019700 Glycine max HOM05D003320 ORTHO05D003941 1.2e-12 77.4 63 52.4
Glyma.17G080100 Glycine max HOM05D003320 ORTHO05D003941 1.2e-12 77.4 64 54.7
Lalb_Chr13g0302781 Lupinus albus HOM05D003320 ORTHO05D003941 1.2e-12 77.4 63 57.1
Sed0009849 Sechium edule HOM05D003320 ORTHO05D003941 1.2e-12 77.4 63 60.3
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 1.6e-12 77.0 68 52.9
Nn3g17480 Nelumbo nucifera HOM05D003320 ORTHO05D003941 1.6e-12 77.0 69 50.7
TAR371G0581 Trochodendron aralioides HOM05D000874 ORTHO05D003941 1.6e-12 77.0 69 49.3
BcaB05g24829 Brassica carinata HOM05D003320 ORTHO05D003941 2.1e-12 76.6 68 52.9
ECA232G1579 Erigeron canadensis HOM05D003320 ORTHO05D003941 2.1e-12 76.6 68 55.9
MD06G1203300 Malus domestica HOM05D003320 ORTHO05D003941 2.1e-12 76.6 68 52.9
Lj4g0022383 Lotus japonicus HOM05D003320 ORTHO05D003941 2.7e-12 76.3 63 54.0
Carub.0002s2096 Capsella rubella HOM05D003320 ORTHO05D003941 3.5e-12 75.9 68 57.4
AUR62039651 Chenopodium quinoa HOM05D003320 ORTHO05D003941 3.5e-12 75.9 63 52.4
BcaB03g15895 Brassica carinata HOM05D003320 ORTHO05D003941 4.6e-12 75.5 49 65.3
Hund02571 Selenicereus undatus HOM05D003320 ORTHO05D003941 4.6e-12 75.5 63 50.8
EL10Ac5g11158 Beta vulgaris HOM05D003320 ORTHO05D003941 6.1e-12 75.1 63 52.4
Nn4g23462 Nelumbo nucifera HOM05D003320 ORTHO05D003941 6.1e-12 75.1 69 49.3
BcaB03g15901 Brassica carinata HOM05D003320 ORTHO05D003941 7.9e-12 74.7 46 67.4
BcaB05g24831 Brassica carinata HOM05D003320 ORTHO05D003941 1.0e-11 74.3 62 56.5
BcaB05g24832 Brassica carinata HOM05D003320 ORTHO05D003941 1.0e-11 74.3 62 56.5
AUR62021532 Chenopodium quinoa HOM05D003320 ORTHO05D003941 1.0e-11 74.3 63 50.8
SGA_v2.0_scaffold114G31918 Striga asiatica HOM05D003320 ORTHO05D003941 1.0e-11 74.3 63 55.6
CSS0049494 Camellia sinensis var. sinensis HOM05D003320 ORTHO05D003941 1.3e-11 73.9 63 52.4
Oeu057198.3 Olea europaea HOM05D003320 ORTHO05D003941 1.3e-11 73.9 63 55.6
Phvul.009G202800 Phaseolus vulgaris HOM05D003320 ORTHO05D003941 1.3e-11 73.9 68 52.9
SEGI_01727 Sequoiadendron giganteum HOM05D003320 ORTHO05D003941 1.3e-11 73.9 72 48.6
BcaB05g24833 Brassica carinata HOM05D003320 ORTHO05D003941 1.8e-11 73.6 62 56.5
vmacro17621 Vaccinium macrocarpon HOM05D003320 ORTHO05D003941 1.8e-11 73.6 63 52.4
HPP92_013434 Vanilla planifolia HOM05D003320 ORTHO05D003941 1.8e-11 73.6 69 49.3
HPP92_027115 Vanilla planifolia HOM05D003320 ORTHO05D003941 1.8e-11 73.6 69 49.3
VMungo1309G1392 Vigna mungo HOM05D003320 ORTHO05D003941 1.8e-11 73.6 63 54.0
MSTRG.4445 Avicennia marina HOM05D003320 ORTHO05D003941 2.3e-11 73.2 63 54.0
C02p31630 Brassica napus HOM05D003320 ORTHO05D003941 2.3e-11 73.2 68 54.4
HanXRQChr16g0502481 Helianthus annuus HOM05D003320 ORTHO05D003941 2.3e-11 73.2 63 54.0
BolC2t09195H Brassica oleracea HOM05D003320 ORTHO05D003941 3.0e-11 72.8 68 54.4
CAN.G1228.10 Capsicum annuum HOM05D003320 ORTHO05D003941 3.0e-11 72.8 68 51.5
Lsat_1_v5_gn_4_110741 Lactuca sativa HOM05D003320 ORTHO05D003941 3.0e-11 72.8 63 54.0
Mapoly0031s0090 Marchantia polymorpha HOM05D003320 ORTHO05D003941 3.0e-11 72.8 69 44.9
AagrBONN_evm.TU.Sc2ySwM_117.209 Anthoceros agrestis HOM05D003320 ORTHO05D003941 3.9e-11 72.4 74 44.6
HanXRQChr09g0270371 Helianthus annuus HOM05D003320 ORTHO05D003941 3.9e-11 72.4 40 72.5
Lalb_Chr12g0197291 Lupinus albus HOM05D003320 ORTHO05D003941 5.1e-11 72.0 63 50.8
Migut.D01756 Erythranthe guttata HOM05D003320 ORTHO05D003941 6.7e-11 71.6 63 52.4
Nitab4.5_0001485g0040 Nicotiana tabacum HOM05D003320 ORTHO05D003941 8.7e-11 71.2 63 54.0
Nitab4.5_0007160g0030 Nicotiana tabacum HOM05D003320 ORTHO05D003941 8.7e-11 71.2 63 54.0
Peaxi162Scf00201g00346 Petunia axillaris HOM05D003320 ORTHO05D003941 8.7e-11 71.2 63 49.2
HPP92_006046 Vanilla planifolia HOM05D003320 ORTHO05D003941 8.7e-11 71.2 74 50.0
A02p19120 Brassica napus HOM05D003320 ORTHO05D003941 1.1e-10 70.9 68 52.9
BraA02t06960Z Brassica rapa HOM05D003320 ORTHO05D003941 1.1e-10 70.9 68 52.9
CSS0013666 Camellia sinensis var. sinensis HOM05D003320 ORTHO05D003941 1.5e-10 70.5 63 50.8
Migut.L00877 Erythranthe guttata HOM05D003320 ORTHO05D003941 1.5e-10 70.5 63 50.8
Rhsim08G0144000 Rhododendron simsii HOM05D003320 ORTHO05D003941 1.5e-10 70.5 63 49.2
BcaC03g15484 Brassica carinata HOM05D003320 ORTHO05D003941 1.9e-10 70.1 68 51.5
CAN.G1228.9 Capsicum annuum HOM05D003320 ORTHO05D003941 3.3e-10 69.3 68 52.9
BcaB05g24835 Brassica carinata HOM05D003320 ORTHO05D003941 9.7e-10 67.8 68 52.9
Sopen03g034040 Solanum pennellii HOM05D003320 ORTHO05D003941 9.7e-10 67.8 68 48.5
Dinv17433 Davidia involucrata HOM05D003320 ORTHO05D003941 1.3e-09 67.4 66 50.0
Solyc03g114960.4 Solanum lycopersicum HOM05D003320 ORTHO05D003941 1.3e-09 67.4 68 48.5
BcaB03g13638 Brassica carinata HOM05D003320 ORTHO05D003941 1.6e-09 67.0 49 57.1
Pp3c16_23230 Physcomitrium patens HOM05D003320 ORTHO05D003941 1.4e-08 63.9 69 39.1
TAR622G0583 Trochodendron aralioides HOM05D003320 ORTHO05D003941 3.4e-07 59.3 69 40.6
CBR_g42082 Chara braunii HOM05D003320 ORTHO05D003941 1.0e-06 57.8 76 39.5
Lj1g0020090 Lotus japonicus HOM05D003320 ORTHO05D003941 1.3e-06 57.4 48 56.2
Aa31LG4G4460 Aethionema arabicum HOM05D003320 ORTHO05D003941 6.5e-06 55.1 69 47.8


User provided reference genes

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