Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 1.4e-194 682.9 377 100.0
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 3.9e-69 266.2 333 50.5
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.5e-68 264.2 325 52.9
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 4.4e-68 262.7 335 53.1
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 2.2e-67 260.4 337 52.8
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.3e-64 251.1 336 50.3
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 2.2e-64 250.4 309 52.8
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 8.5e-64 248.4 306 52.9
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 1.1e-63 248.1 312 49.7
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 1.1e-63 248.1 300 50.0
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 2.5e-63 246.9 302 50.7
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 3.2e-63 246.5 311 48.9
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 4.2e-63 246.1 349 50.1
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 5.5e-63 245.7 303 53.1
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 7.2e-63 245.4 329 49.8
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 1.2e-62 244.6 331 51.7
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 4.7e-62 242.7 307 54.7
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 6.1e-62 242.3 335 49.0
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 8.0e-62 241.9 311 53.7
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 1.8e-61 240.7 300 52.3
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 3.0e-61 240.0 305 51.8
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 4.0e-61 239.6 324 52.8
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.2e-60 238.0 321 49.2
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 3.3e-60 236.5 325 48.3
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 7.5e-60 235.3 304 51.0
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 7.5e-60 235.3 316 48.4
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 1.3e-59 234.6 322 47.2
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 6.3e-59 232.3 333 47.4
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.4e-58 231.1 340 50.3
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 4.1e-58 229.6 292 54.8
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 7.0e-58 228.8 336 47.6
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 9.1e-58 228.4 307 52.1
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 2.0e-57 227.3 329 48.9
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 2.7e-57 226.9 305 50.8
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 3.5e-57 226.5 328 47.6
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.0e-56 224.9 336 47.3
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 6.5e-56 222.2 328 47.6
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 1.9e-55 220.7 298 48.7
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 1.9e-55 220.7 317 48.3
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 4.2e-55 219.5 326 49.4
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 5.5e-55 219.2 332 48.2
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.2e-54 218.0 315 47.9
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 1.2e-54 218.0 329 48.9
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 2.7e-54 216.9 336 45.5
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 3.6e-54 216.5 314 48.4
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 3.6e-54 216.5 317 47.0
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 4.7e-54 216.1 305 48.5
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 4.7e-54 216.1 327 45.9
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 1.4e-53 214.5 317 47.0
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 3.0e-53 213.4 320 46.6
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 4.0e-53 213.0 299 49.2
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 1.2e-52 211.5 302 49.3
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 1.5e-52 211.1 314 46.2
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 4.4e-52 209.5 295 48.8
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 5.7e-52 209.1 315 46.3
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 5.7e-52 209.1 323 45.5
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 9.8e-52 208.4 301 45.5
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 9.8e-52 208.4 302 49.3
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 1.7e-51 207.6 336 44.9
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 8.3e-51 205.3 333 43.8
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 1.4e-50 204.5 310 48.4
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 2.4e-50 203.8 315 44.8
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 4.1e-50 203.0 336 45.2
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 5.4e-50 202.6 258 52.7
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.2e-49 201.4 315 46.0
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 2.0e-49 200.7 328 44.5
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 2.7e-49 200.3 335 42.4
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 2.7e-49 200.3 300 43.7
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 1.0e-48 198.4 328 42.1
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 2.9e-48 196.8 324 46.6
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 2.9e-48 196.8 499 36.7
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 6.5e-48 195.7 300 47.3
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 1.9e-47 194.1 323 44.3
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 4.2e-47 193.0 322 44.7
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 4.2e-47 193.0 334 43.7
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 4.2e-47 193.0 321 43.3
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 6.1e-46 189.1 239 51.9
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 8.0e-46 188.7 305 45.2
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 1.4e-45 188.0 297 41.8
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 1.8e-45 187.6 336 41.4
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 1.8e-45 187.6 308 43.2
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 3.0e-45 186.8 398 36.9
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 4.0e-45 186.4 264 48.5
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 8.8e-45 185.3 325 39.7
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 9.8e-44 181.8 314 40.1
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 2.8e-43 180.3 311 42.1
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 3.7e-43 179.9 308 42.2
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 4.9e-43 179.5 308 41.9
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 1.1e-42 178.3 317 39.4
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 1.1e-42 178.3 311 44.1
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 1.8e-42 177.6 297 39.7
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 1.8e-42 177.6 297 39.7
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 2.4e-42 177.2 283 44.9
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 3.1e-42 176.8 336 40.8
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 4.1e-42 176.4 321 43.0
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.6e-41 174.5 294 42.5
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 2.0e-41 174.1 361 38.8
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 5.9e-41 172.6 308 43.2
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 7.8e-41 172.2 256 48.8
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 2.9e-40 170.2 297 39.1
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 2.9e-40 170.2 313 40.3
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 3.8e-40 169.9 314 40.1
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 6.6e-40 169.1 309 43.7
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.1e-39 168.3 330 39.4
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.1e-39 168.3 309 39.5
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 1.5e-39 167.9 259 48.3
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 9.5e-39 165.2 296 42.2
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 2.1e-38 164.1 313 40.9
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 1.0e-37 161.8 324 35.5
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 3.0e-37 160.2 245 46.5
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.5e-36 157.9 292 38.0
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 7.5e-36 155.6 299 36.8
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 6.4e-35 152.5 318 40.6
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 1.4e-34 151.4 343 38.5
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 1.8e-34 151.0 300 36.0
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.8e-34 151.0 300 38.7
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 1.6e-33 147.9 292 35.3
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 7.3e-31 139.0 293 33.8
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 9.5e-31 138.7 295 38.3
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 3.6e-30 136.7 290 33.1
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 1.3e-27 128.3 197 41.1
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 1.3e-27 128.3 312 35.9
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 4.1e-26 123.2 313 35.1
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 7.0e-26 122.5 310 34.5
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 9.2e-26 122.1 299 33.4
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 2.0e-25 120.9 318 34.3
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 6.6e-24 115.9 196 41.8
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 2.1e-22 110.9 239 36.0
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 3.1e-21 107.1 290 30.3
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.5e-20 104.8 149 46.3
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.4e-18 98.2 95 55.8
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 6.0e-17 92.8 193 34.2
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 5.1e-16 89.7 266 32.0
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 1.5e-15 88.2 346 29.2
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.1e-14 84.3 106 55.7
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.7e-11 74.7 100 54.0
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 1.7e-11 74.7 88 51.1
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 1.4e-10 71.6 117 40.2
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 1.2e-09 68.6 63 60.3
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 2.7e-09 67.4 52 67.3
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 7.8e-09 65.9 86 47.7
BolC2t06302H Brassica oleracea HOM05D009919 ORTHO05D012044 2.3e-08 64.3 113 39.8
C02p03410 Brassica napus HOM05D009919 ORTHO05D012044 1.9e-07 61.2 110 39.1
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 4.3e-07 60.1 92 44.6
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 9.6e-07 58.9 83 44.6
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.2e-06 58.5 81 53.1


User provided reference genes

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