Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 6.9e-132 474.2 272 100.0
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 1.4e-87 327.0 273 64.5
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 1.4e-87 327.0 273 64.5
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 3.0e-87 325.9 269 69.9
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 5.2e-87 325.1 268 70.5
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 8.8e-87 324.3 271 68.3
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 8.8e-87 324.3 235 71.9
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 2.0e-86 323.2 271 68.6
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 4.4e-86 322.0 274 66.1
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 4.4e-86 322.0 269 63.2
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 7.5e-86 321.2 272 64.7
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 7.5e-86 321.2 269 66.9
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.7e-85 320.1 269 66.9
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 2.2e-85 319.7 269 72.9
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 2.8e-85 319.3 269 72.9
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 2.8e-85 319.3 269 72.9
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 3.7e-85 318.9 269 66.5
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 3.7e-85 318.9 269 72.9
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 4.8e-85 318.5 269 66.9
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 6.3e-85 318.2 270 66.7
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 3.1e-84 315.8 271 63.1
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 5.3e-84 315.1 271 70.1
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 7.0e-84 314.7 269 67.3
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 7.0e-84 314.7 270 64.8
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 1.6e-83 313.5 268 65.3
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 2.7e-83 312.8 272 61.4
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 3.5e-83 312.4 265 61.9
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 4.5e-83 312.0 269 63.2
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 5.9e-83 311.6 269 71.7
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 1.0e-82 310.8 268 65.7
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.3e-82 310.5 268 66.4
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 1.7e-82 310.1 269 66.9
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 1.7e-82 310.1 268 65.3
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 2.9e-82 309.3 271 69.4
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 6.5e-82 308.1 269 71.0
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 8.5e-82 307.8 269 69.5
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 8.5e-82 307.8 269 64.3
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.1e-81 307.4 269 65.8
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 1.1e-81 307.4 271 66.1
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 1.5e-81 307.0 267 62.2
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 1.9e-81 306.6 270 64.8
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 2.5e-81 306.2 267 61.8
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.5e-81 306.2 268 69.4
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 3.2e-81 305.8 269 62.8
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 4.2e-81 305.4 269 61.3
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 4.2e-81 305.4 267 65.2
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 5.5e-81 305.1 271 63.5
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 7.2e-81 304.7 267 61.4
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 7.2e-81 304.7 270 64.4
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 7.2e-81 304.7 266 65.4
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 9.4e-81 304.3 270 64.8
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 9.4e-81 304.3 271 61.3
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 1.2e-80 303.9 271 63.1
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 1.2e-80 303.9 270 64.4
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 1.2e-80 303.9 269 62.1
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 1.6e-80 303.5 274 63.9
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 1.6e-80 303.5 273 64.8
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 2.1e-80 303.1 274 63.9
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 2.1e-80 303.1 274 63.9
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 2.1e-80 303.1 266 61.3
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 2.1e-80 303.1 271 61.3
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 2.7e-80 302.8 267 61.4
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 4.7e-80 302.0 271 62.7
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 4.7e-80 302.0 269 60.6
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 4.7e-80 302.0 271 60.9
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 8.0e-80 301.2 269 61.3
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 1.0e-79 300.8 270 59.3
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 1.4e-79 300.4 278 62.2
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 1.8e-79 300.1 269 59.9
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 1.8e-79 300.1 272 57.4
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 2.3e-79 299.7 271 60.1
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 3.0e-79 299.3 272 60.3
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 3.0e-79 299.3 269 65.1
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 4.0e-79 298.9 270 61.5
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 5.2e-79 298.5 271 62.0
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 6.8e-79 298.1 269 68.4
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 8.8e-79 297.7 270 59.6
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 2.0e-78 296.6 269 62.8
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 2.6e-78 296.2 270 59.6
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 3.4e-78 295.8 269 61.3
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 4.4e-78 295.4 235 68.5
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 5.7e-78 295.0 271 59.4
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 7.5e-78 294.7 272 62.9
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 9.8e-78 294.3 267 58.1
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 4.8e-77 292.0 272 58.5
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 4.8e-77 292.0 271 60.5
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 6.3e-77 291.6 271 63.1
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 1.1e-76 290.8 272 56.2
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 1.1e-76 290.8 264 59.5
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 1.8e-76 290.0 270 57.4
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 3.8e-74 282.3 237 63.3
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 5.0e-74 282.0 244 61.9
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 1.1e-73 280.8 269 59.5
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 6.1e-72 275.0 261 62.1
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 1.3e-69 267.3 267 56.9
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 2.7e-67 259.6 271 57.9
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 1.0e-66 257.7 274 52.9
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 2.3e-66 256.5 267 55.1
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 2.9e-66 256.1 276 52.5
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 2.9e-66 256.1 234 61.1
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 8.6e-66 254.6 232 60.8
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 2.5e-65 253.1 234 56.8
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 2.1e-64 250.0 238 57.1
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 8.9e-63 244.6 212 62.7
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.4e-62 242.7 220 64.5
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 1.9e-57 226.9 180 64.4
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 4.0e-55 219.2 269 53.2
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 7.0e-52 208.4 169 62.7
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 2.0e-51 206.8 182 61.5
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 2.3e-50 203.4 235 52.3
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 7.1e-44 181.8 203 49.8
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 1.0e-42 177.9 242 46.3
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 7.3e-41 171.8 180 60.6
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 8.4e-37 158.3 149 55.7
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 5.4e-28 129.0 266 44.4
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 6.2e-24 115.5 185 42.2
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 1.8e-23 114.0 81 76.5
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 2.1e-16 90.5 85 58.8
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 1.1e-15 88.2 85 57.6
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 3.1e-15 86.7 85 57.6
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 3.7e-08 63.2 65 52.3
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 1.8e-07 60.8 69 50.7
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 2.4e-07 60.5 113 37.2
SMO343G0062 Selaginella moellendorffii HOM05D067698 ORTHO05D050854 7.6e-06 55.5 92 34.8


User provided reference genes

Program Settings