Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 1.4e-70 269.6 150 100.0
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.4e-25 120.2 148 50.0
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 2.4e-25 119.4 148 49.3
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 3.1e-25 119.0 139 51.1
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 6.9e-25 117.9 146 47.3
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 9.0e-25 117.5 142 49.3
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 2.6e-24 115.9 143 48.3
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 5.8e-24 114.8 142 50.0
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 5.8e-24 114.8 143 49.7
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 7.6e-24 114.4 139 49.6
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 1.7e-23 113.2 151 47.7
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 4.9e-23 111.7 148 45.3
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 8.4e-23 110.9 142 49.3
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 1.1e-22 110.5 147 44.2
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 1.1e-22 110.5 150 46.0
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 1.9e-22 109.8 146 44.5
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 2.5e-22 109.4 153 45.8
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 3.2e-22 109.0 145 46.2
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 4.2e-22 108.6 146 43.8
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 4.2e-22 108.6 121 50.4
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 4.2e-22 108.6 150 44.7
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 4.2e-22 108.6 146 45.9
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 4.2e-22 108.6 142 46.5
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 5.5e-22 108.2 134 47.0
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 5.5e-22 108.2 145 46.2
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 7.1e-22 107.8 142 43.7
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 7.1e-22 107.8 147 46.9
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 9.3e-22 107.5 143 42.7
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 9.3e-22 107.5 143 42.7
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 1.2e-21 107.1 148 42.6
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 1.2e-21 107.1 134 46.3
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 1.2e-21 107.1 146 43.8
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 1.2e-21 107.1 153 45.1
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 1.6e-21 106.7 146 43.8
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 2.1e-21 106.3 145 46.2
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 2.7e-21 105.9 136 48.5
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 3.5e-21 105.5 143 43.4
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 3.5e-21 105.5 148 45.3
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 4.6e-21 105.1 131 48.1
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 7.9e-21 104.4 142 45.8
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 1.0e-20 104.0 147 42.9
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 1.3e-20 103.6 142 45.8
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.3e-20 103.6 145 43.4
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 1.3e-20 103.6 149 46.3
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 1.3e-20 103.6 142 45.8
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 1.8e-20 103.2 123 48.0
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 1.8e-20 103.2 149 44.3
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 1.8e-20 103.2 142 43.7
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.8e-20 103.2 140 46.4
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 2.3e-20 102.8 138 44.9
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 2.3e-20 102.8 142 45.1
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 3.0e-20 102.4 152 44.7
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 3.9e-20 102.1 138 44.9
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 3.9e-20 102.1 138 44.9
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 5.1e-20 101.7 140 47.1
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 5.1e-20 101.7 149 43.6
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 6.7e-20 101.3 145 42.1
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 8.7e-20 100.9 144 42.4
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 8.7e-20 100.9 139 44.6
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 1.1e-19 100.5 115 49.6
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 1.5e-19 100.1 144 45.8
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 2.5e-19 99.4 142 42.3
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.5e-19 99.4 149 43.0
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.5e-19 99.4 149 43.6
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 4.3e-19 98.6 148 42.6
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 5.7e-19 98.2 148 43.2
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 7.4e-19 97.8 148 44.6
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 7.4e-19 97.8 139 44.6
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 1.3e-18 97.1 143 42.7
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 1.3e-18 97.1 154 42.9
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 1.3e-18 97.1 143 41.3
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 1.6e-18 96.7 145 41.4
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.6e-18 96.7 145 41.4
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.6e-18 96.7 145 41.4
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 2.2e-18 96.3 149 46.3
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 2.2e-18 96.3 136 44.9
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.8e-18 95.9 151 40.4
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 2.8e-18 95.9 141 44.0
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 2.8e-18 95.9 142 42.3
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 3.7e-18 95.5 141 42.6
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 3.7e-18 95.5 143 44.1
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 3.7e-18 95.5 152 43.4
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 3.7e-18 95.5 144 43.8
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.8e-18 95.1 145 40.7
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 4.8e-18 95.1 156 40.4
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 4.8e-18 95.1 157 42.7
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 6.3e-18 94.7 145 40.7
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 6.3e-18 94.7 156 40.4
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 6.3e-18 94.7 156 40.4
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 6.3e-18 94.7 146 40.4
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.1e-17 94.0 131 45.0
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 1.1e-17 94.0 142 40.1
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 1.1e-17 94.0 126 43.7
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.1e-17 94.0 142 41.5
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.1e-17 94.0 122 50.0
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 1.4e-17 93.6 144 44.4
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 1.4e-17 93.6 139 43.9
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 1.8e-17 93.2 149 42.3
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 1.8e-17 93.2 149 42.3
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 2.4e-17 92.8 142 41.5
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 4.1e-17 92.0 151 43.7
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 4.1e-17 92.0 139 41.7
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 4.1e-17 92.0 142 40.8
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.2e-16 90.5 144 41.0
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.2e-16 90.5 124 45.2
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 2.0e-16 89.7 152 40.1
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 2.6e-16 89.4 151 41.7
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 3.4e-16 89.0 126 42.9
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 4.5e-16 88.6 146 41.1
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 5.9e-16 88.2 107 50.5
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 1.3e-15 87.0 126 42.1
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 2.2e-15 86.3 143 37.1
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 2.2e-15 86.3 144 38.9
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 2.2e-15 86.3 160 40.0
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 2.9e-15 85.9 142 40.1
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 6.5e-15 84.7 158 38.6
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.1e-14 84.0 121 43.0
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 1.4e-14 83.6 139 40.3
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.9e-14 83.2 148 39.9
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 5.5e-14 81.6 151 35.8
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 7.2e-14 81.3 142 36.6
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 9.3e-14 80.9 139 40.3
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.2e-13 80.5 133 39.1
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 1.2e-13 80.5 144 36.1
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 2.1e-13 79.7 177 36.7
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 4.6e-13 78.6 144 37.5
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 4.6e-13 78.6 150 39.3
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 1.0e-12 77.4 130 40.0
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.3e-12 76.3 119 43.7
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 3.0e-12 75.9 118 41.5
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 5.1e-12 75.1 75 52.0
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 5.1e-12 75.1 143 33.6
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 8.8e-12 74.3 114 42.1
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 1.1e-11 73.9 149 34.2
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 1.5e-11 73.6 77 49.4
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 2.5e-11 72.8 162 30.2
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 3.3e-11 72.4 141 36.2
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 3.3e-11 72.4 81 48.1
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.7e-10 70.1 111 37.8
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 6.3e-10 68.2 145 33.8
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 6.3e-10 68.2 145 33.8
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 8.2e-10 67.8 119 35.3
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 1.8e-09 66.6 64 50.0
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.5e-08 63.5 136 30.9
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 3.4e-08 62.4 122 32.0
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 1.3e-07 60.5 101 43.6
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.9e-07 59.3 115 33.9
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 8.5e-07 57.8 136 30.1
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 4.2e-06 55.5 137 32.8


User provided reference genes

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