Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI16738 Sapria himalayana HOM05D006345 ORTHO05D007428 4.1e-133 478.0 234 100.0
Nn3g17198 Nelumbo nucifera HOM05D006345 ORTHO05D007428 1.2e-89 333.6 215 74.4
CiPaw.01G263700 Carya illinoinensis HOM05D006345 ORTHO05D007428 6.9e-88 327.8 209 75.1
QL08p052794 Quercus lobata HOM05D006345 ORTHO05D007428 1.5e-87 326.6 210 74.3
Sed0017834 Sechium edule HOM05D006345 ORTHO05D007428 1.3e-86 323.6 209 75.1
TAR624G0710 Trochodendron aralioides HOM05D006345 ORTHO05D007428 1.7e-86 323.2 214 73.8
Cpa.g.sc12.137 Carica papaya HOM05D006345 ORTHO05D007428 2.2e-86 322.8 214 72.4
Ciclev10016345m.g Citrus clementina HOM05D006345 ORTHO05D007428 3.8e-86 322.0 209 74.2
CSS0008102 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 4.9e-86 321.6 209 74.6
ClCG02G007550 Citrullus lanatus HOM05D006345 ORTHO05D007428 4.9e-86 321.6 209 74.6
Potri.001G073700 Populus trichocarpa HOM05D006345 ORTHO05D007428 1.1e-85 320.5 209 74.6
Nitab4.5_0001925g0110 Nicotiana tabacum HOM05D006345 ORTHO05D007428 1.4e-85 320.1 217 71.9
Sed0021159 Sechium edule HOM05D006345 ORTHO05D007428 1.4e-85 320.1 209 73.7
Duzib212G0272 Durio zibethinus HOM05D006345 ORTHO05D007428 2.4e-85 319.3 214 72.0
Manes.16G061100 Manihot esculenta HOM05D006345 ORTHO05D007428 3.2e-85 318.9 209 73.7
Sabra01G0052000 Salix brachista HOM05D006345 ORTHO05D007428 4.2e-85 318.5 209 74.2
Rhsim13G0136400 Rhododendron simsii HOM05D006345 ORTHO05D007428 1.6e-84 316.6 214 72.4
CAN.G575.62 Capsicum annuum HOM05D006345 ORTHO05D007428 3.5e-84 315.5 216 71.8
Lj3g0013440 Lotus japonicus HOM05D006345 ORTHO05D007428 3.5e-84 315.5 213 70.9
Nitab4.5_0008647g0020 Nicotiana tabacum HOM05D006345 ORTHO05D007428 4.6e-84 315.1 216 71.8
Lalb_Chr07g0189941 Lupinus albus HOM05D006345 ORTHO05D007428 6.0e-84 314.7 209 73.7
Glyma.01G139633 Glycine max HOM05D006345 ORTHO05D007428 7.8e-84 314.3 209 72.2
Psat7g230920 Pisum sativum HOM05D006345 ORTHO05D007428 7.8e-84 314.3 209 71.3
PGSC0003DMG400023836 Solanum tuberosum HOM05D006345 ORTHO05D007428 1.0e-83 313.9 216 71.3
CiPaw.14G048700 Carya illinoinensis HOM05D006345 ORTHO05D007428 1.7e-83 313.2 219 69.4
Ca_19950_v3 Cicer arietinum L. HOM05D006345 ORTHO05D007428 3.0e-83 312.4 209 72.7
FAN25G2350 Fragaria x ananassa HOM05D006345 ORTHO05D007428 3.0e-83 312.4 222 69.8
Medtr4g024860 Medicago truncatula HOM05D000001 ORTHO05D000003 3.0e-83 312.4 213 70.4
Phvul.003G037201 Phaseolus vulgaris HOM05D006345 ORTHO05D007428 3.0e-83 312.4 209 72.2
MELO3C018575.2 Cucumis melo HOM05D006345 ORTHO05D007428 3.9e-83 312.0 209 72.7
PSO675G7514 Papaver somniferum HOM05D006345 ORTHO05D007428 3.9e-83 312.0 222 70.7
CsaV3_7G007230 Cucumis sativus L. HOM05D006345 ORTHO05D007428 6.6e-83 311.2 209 72.2
Peaxi162Scf00062g10131 Petunia axillaris HOM05D006345 ORTHO05D007428 1.1e-82 310.5 214 70.6
TPR.G7580 Trifolium pratense HOM05D006345 ORTHO05D007428 1.1e-82 310.5 209 71.8
Thecc.04G283900 Theobroma cacao HOM05D006345 ORTHO05D007428 1.5e-82 310.1 214 71.0
Glyma.03G027700 Glycine max HOM05D006345 ORTHO05D007428 1.9e-82 309.7 209 71.8
TWI53G2073 Tripterygium wilfordii HOM05D006345 ORTHO05D007428 1.9e-82 309.7 214 71.0
Prupe.4G121300 Prunus persica HOM05D006345 ORTHO05D007428 2.5e-82 309.3 214 71.0
PGR042G3945 Punica granatum HOM05D006345 ORTHO05D007428 3.3e-82 308.9 209 70.8
arahy.Tifrunner.gnm1.ann1.P3RVZQ Arachis hypogaea HOM05D006345 ORTHO05D007428 4.3e-82 308.5 209 71.3
Aqoxy7G02153 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 7.3e-82 307.8 223 67.7
arahy.Tifrunner.gnm1.ann1.G9BQRV Arachis hypogaea HOM05D006345 ORTHO05D007428 7.3e-82 307.8 209 70.8
arahy.Tifrunner.gnm1.ann1.S1VR06 Arachis hypogaea HOM05D006345 ORTHO05D007428 7.3e-82 307.8 209 70.3
CANSAT11G1250 Cannabis sativa HOM05D006345 ORTHO05D007428 7.3e-82 307.8 210 71.0
Lalb_Chr13g0291791 Lupinus albus HOM05D006345 ORTHO05D007428 7.3e-82 307.8 207 70.5
Sc05g0003040 Simmondsia chinensis HOM05D006345 ORTHO05D007428 7.3e-82 307.8 209 70.8
Dinv19690 Davidia involucrata HOM05D006345 ORTHO05D007428 9.6e-82 307.4 215 69.8
THA.LOC104822694 Tarenaya hassleriana HOM05D006345 ORTHO05D007428 9.6e-82 307.4 214 70.1
FAN11G3812 Fragaria x ananassa HOM05D006345 ORTHO05D007428 1.3e-81 307.0 216 69.4
Eucgr.F03783 Eucalyptus grandis HOM05D006345 ORTHO05D007428 1.6e-81 306.6 217 69.1
Sopen12g034690 Solanum pennellii HOM05D006345 ORTHO05D007428 1.6e-81 306.6 214 69.2
FvH4_3g13390 Fragaria vesca HOM05D006345 ORTHO05D007428 2.1e-81 306.2 209 71.3
FAN21G0075 Fragaria x ananassa HOM05D006345 ORTHO05D007428 2.1e-81 306.2 209 71.3
MD05G1242200 Malus domestica HOM05D006345 ORTHO05D007428 2.1e-81 306.2 214 70.1
Cc09_g04580 Coffea canephora HOM05D006345 ORTHO05D007428 2.8e-81 305.8 209 70.8
arahy.Tifrunner.gnm1.ann1.W97VC3 Arachis hypogaea HOM05D006345 ORTHO05D007428 3.6e-81 305.4 209 69.9
RcHm_v2.0_Chr5g0022101 Rosa chinensis HOM05D006345 ORTHO05D007428 3.6e-81 305.4 209 71.8
Aqoxy3G02382 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 6.2e-81 304.7 223 67.7
VMungo1383G2204 Vigna mungo HOM05D006345 ORTHO05D007428 6.2e-81 304.7 209 70.3
COL.COLO4_13882 Corchorus olitorius HOM05D006345 ORTHO05D007428 1.4e-80 303.5 209 69.4
PSO541G0968 Papaver somniferum HOM05D006345 ORTHO05D007428 1.4e-80 303.5 222 69.4
PSO782G3410 Papaver somniferum HOM05D006345 ORTHO05D007428 1.4e-80 303.5 217 71.0
Gohir.A10G163600 Gossypium hirsutum HOM05D006345 ORTHO05D007428 1.8e-80 303.1 209 69.4
Gorai.011G189500 Gossypium raimondii HOM05D006345 ORTHO05D007428 1.8e-80 303.1 209 69.4
Oeu012935.1 Olea europaea HOM05D006345 ORTHO05D007428 1.8e-80 303.1 215 67.9
Oeu017184.1 Olea europaea HOM05D006345 ORTHO05D007428 1.8e-80 303.1 214 68.7
MBI16_g30839_MAGBIO Magnolia biondii HOM05D006345 ORTHO05D007428 4.0e-80 302.0 219 68.0
SalBow2G1193 Salvia bowleyana HOM05D006345 ORTHO05D007428 9.0e-80 300.8 214 68.7
AT3G13440 Arabidopsis thaliana HOM05D006345 ORTHO05D007428 1.5e-79 300.1 220 65.9
MSTRG.21400 Avicennia marina HOM05D006345 ORTHO05D007428 1.5e-79 300.1 214 68.7
DCAR_001254 Daucus carota HOM05D006345 ORTHO05D007428 1.5e-79 300.1 214 66.8
ECA238G2485 Erigeron canadensis HOM05D006345 ORTHO05D007428 1.5e-79 300.1 209 67.0
EL10Ac3g05939 Beta vulgaris HOM05D006345 ORTHO05D007428 2.6e-79 299.3 215 68.8
Cc06_g02140 Coffea canephora HOM05D006345 ORTHO05D007428 2.6e-79 299.3 209 69.4
Ah.07g202050 Amaranthus hybridus HOM05D006345 ORTHO05D007428 3.4e-79 298.9 215 67.9
FAN16G3736 Fragaria x ananassa HOM05D006345 ORTHO05D007428 3.4e-79 298.9 209 70.3
AL3G25340 Arabidopsis lyrata HOM05D006345 ORTHO05D007428 4.5e-79 298.5 209 68.4
SalBow7G0027 Salvia bowleyana HOM05D006345 ORTHO05D007428 4.5e-79 298.5 214 68.2
Gohir.D10G170000 Gossypium hirsutum HOM05D006345 ORTHO05D007428 5.8e-79 298.1 209 68.4
Aa31LG8G650 Aethionema arabicum HOM05D006345 ORTHO05D007428 9.9e-79 297.4 214 65.4
Carub.0003s1288 Capsella rubella HOM05D006345 ORTHO05D007428 9.9e-79 297.4 214 67.3
Carub.0006s3398 Capsella rubella HOM05D006345 ORTHO05D007428 1.7e-78 296.6 209 67.5
BcaC09g48312 Brassica carinata HOM05D006345 ORTHO05D007428 2.2e-78 296.2 215 67.4
C01p51620 Brassica napus HOM05D006345 ORTHO05D007428 2.2e-78 296.2 215 67.4
BolC1t05105H Brassica oleracea HOM05D006345 ORTHO05D007428 2.2e-78 296.2 215 67.4
Migut.D00572 Erythranthe guttata HOM05D006345 ORTHO05D007428 6.4e-78 294.7 215 66.5
Thhalv10021414m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 6.4e-78 294.7 214 66.4
A01p40130 Brassica napus HOM05D006345 ORTHO05D007428 2.4e-77 292.7 215 67.0
BraA01t04054Z Brassica rapa HOM05D006345 ORTHO05D007428 4.2e-77 292.0 215 66.5
HanXRQChr14g0447431 Helianthus annuus HOM05D006345 ORTHO05D007428 7.1e-77 291.2 209 64.6
CARHR088090 Cardamine hirsuta HOM05D006345 ORTHO05D007428 1.2e-76 290.4 214 65.4
BcaB04g21015 Brassica carinata HOM05D006345 ORTHO05D007428 2.1e-76 289.7 215 66.5
Ah.15g099610 Amaranthus hybridus HOM05D006345 ORTHO05D007428 1.0e-75 287.3 215 67.9
AUR62015383 Chenopodium quinoa HOM05D006345 ORTHO05D007428 1.3e-75 287.0 210 68.6
Lsat_1_v5_gn_3_103240 Lactuca sativa HOM05D006345 ORTHO05D007428 1.3e-75 287.0 222 63.5
unitig_52.g17581 Utricularia gibba HOM05D006345 ORTHO05D007428 3.0e-75 285.8 210 66.7
BraA05t22416Z Brassica rapa HOM05D002140 ORTHO05D007428 3.9e-75 285.4 209 66.5
Sp3g11640 Schrenkiella parvula HOM05D006345 ORTHO05D007428 3.9e-75 285.4 204 67.6
CDE06G0136 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 5.1e-75 285.0 209 66.5
CDE04G1044 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 6.7e-75 284.6 209 66.0
A05p36090 Brassica napus HOM05D002140 ORTHO05D007428 8.7e-75 284.3 209 65.6
BcaC05g29179 Brassica carinata HOM05D002140 ORTHO05D007428 1.1e-74 283.9 209 65.6
C05p54470 Brassica napus HOM05D002140 ORTHO05D007428 1.1e-74 283.9 209 65.6
BolC5t34114H Brassica oleracea HOM05D002140 ORTHO05D007428 1.1e-74 283.9 209 65.6
HPP92_018755 Vanilla planifolia HOM05D006345 ORTHO05D007428 1.1e-74 283.9 217 63.1
SGA_v2.0_scaffold8G04616 Striga asiatica HOM05D006345 ORTHO05D007428 3.3e-74 282.3 209 65.6
ATR0561G247 Amborella trichopoda HOM05D006345 ORTHO05D007428 5.6e-74 281.6 210 67.1
Os03g0824200 Oryza sativa ssp. japonica HOM05D006345 ORTHO05D007428 2.8e-73 279.3 215 62.3
Pp3c9_17440 Physcomitrium patens HOM05D006345 ORTHO05D007428 4.8e-73 278.5 209 63.6
SMO358G0200 Selaginella moellendorffii HOM05D006345 ORTHO05D007428 6.9e-72 274.6 209 62.7
Zm00001eb211470 Zea mays HOM05D006345 ORTHO05D007428 4.5e-71 271.9 209 63.6
Mapoly0069s0066 Marchantia polymorpha HOM05D006345 ORTHO05D007428 7.6e-71 271.2 209 62.2
Thhalv10009961m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 2.1e-68 263.1 214 60.3
CBR_g45447 Chara braunii HOM05D006345 ORTHO05D007428 5.6e-66 255.0 220 55.9
Solyc12g100070.3 Solanum lycopersicum HOM05D006345 ORTHO05D007428 2.1e-65 253.1 177 67.8
AagrBONN_evm.TU.Sc2ySwM_117.4015 Anthoceros agrestis HOM05D006345 ORTHO05D007428 2.4e-64 249.6 209 57.4
Lsat_1_v5_gn_2_63801 Lactuca sativa HOM05D006345 ORTHO05D007428 2.9e-62 242.7 211 57.3
AUR62002307 Chenopodium quinoa HOM05D006345 ORTHO05D007428 1.9e-61 240.0 215 60.0
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 4.3e-58 228.8 186 61.8
SEGI_21458 Sequoiadendron giganteum HOM05D006345 ORTHO05D007428 4.1e-56 222.2 162 69.1
Cre01.g036750 Chlamydomonas reinhardtii HOM05D006345 ORTHO05D007428 1.0e-43 181.0 200 49.5
CAN.G1126.44 Capsicum annuum HOM05D006345 ORTHO05D007428 2.8e-41 172.9 179 53.1
Zm00001eb141630 Zea mays HOM05D006345 ORTHO05D007428 5.3e-40 168.7 145 59.3
CSS0000171 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 6.1e-36 155.2 95 75.8
MCO02G297 Micromonas commoda HOM05D006345 ORTHO05D007428 5.3e-32 142.1 174 44.8
Potri.003G157201 Populus trichocarpa HOM05D006345 ORTHO05D007428 5.3e-32 142.1 118 61.0
Sabra03G0114100 Salix brachista HOM05D000029 ORTHO05D000854 5.7e-26 122.1 189 41.3
Zm00001eb356470 Zea mays HOM05D006345 ORTHO05D007428 1.3e-25 120.9 98 62.2
ATR0006G036 Amborella trichopoda HOM05D006345 ORTHO05D007428 6.8e-11 72.0 46 71.7
Lj1P1152T38 Lonicera japonica HOM05D006345 ORTHO05D007428 4.1e-08 62.8 43 62.8


User provided reference genes

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