Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI16728 Sapria himalayana HOM05D003115 ORTHO05D003595 5.9e-100 367.5 177 100.0
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 1.4e-24 117.1 112 54.5
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 4.0e-24 115.5 112 53.6
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 4.0e-24 115.5 112 53.6
CANSAT78G1406 Cannabis sativa HOM05D003115 ORTHO05D003595 9.0e-24 114.4 112 52.7
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 5.8e-23 111.7 112 52.7
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 5.8e-23 111.7 112 52.7
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 1.0e-22 110.9 112 52.7
Haze_07641 Corylus avellana HOM05D003115 ORTHO05D003595 1.0e-22 110.9 112 52.7
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 1.3e-22 110.5 112 51.8
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 2.2e-22 109.8 112 50.9
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 2.9e-22 109.4 112 51.8
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 2.9e-22 109.4 112 50.9
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 3.8e-22 109.0 112 50.0
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 8.4e-22 107.8 112 50.9
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 1.1e-21 107.5 112 51.8
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 1.4e-21 107.1 112 50.9
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 1.4e-21 107.1 112 50.9
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 1.4e-21 107.1 107 51.4
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 1.9e-21 106.7 112 50.9
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 2.5e-21 106.3 67 67.2
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 5.5e-21 105.1 112 49.1
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 5.5e-21 105.1 112 49.1
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 5.5e-21 105.1 67 68.7
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 7.1e-21 104.8 112 50.0
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 9.3e-21 104.4 112 49.1
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 1.2e-20 104.0 111 47.7
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 1.6e-20 103.6 81 58.0
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 2.1e-20 103.2 112 49.1
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 2.1e-20 103.2 113 48.7
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 2.1e-20 103.2 123 47.2
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 2.7e-20 102.8 113 47.8
Hund11640 Selenicereus undatus HOM05D003115 ORTHO05D003595 2.7e-20 102.8 113 45.1
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 2.7e-20 102.8 123 47.2
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 2.7e-20 102.8 123 47.2
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 3.5e-20 102.4 67 65.7
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 3.5e-20 102.4 107 50.5
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 3.5e-20 102.4 112 48.2
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 4.6e-20 102.1 71 63.4
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 4.6e-20 102.1 112 47.3
Lalb_Chr23g0269091 Lupinus albus HOM05D003115 ORTHO05D003595 4.6e-20 102.1 112 49.1
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 7.9e-20 101.3 112 48.2
Eucgr.H00030 Eucalyptus grandis HOM05D003115 ORTHO05D003595 7.9e-20 101.3 107 47.7
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 7.9e-20 101.3 67 67.2
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 7.9e-20 101.3 112 47.3
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 1.0e-19 100.9 113 46.9
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 1.3e-19 100.5 114 50.0
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 1.3e-19 100.5 67 67.2
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 1.8e-19 100.1 107 47.7
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 2.3e-19 99.8 107 47.7
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 2.3e-19 99.8 107 47.7
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 2.3e-19 99.8 111 46.8
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 3.9e-19 99.0 67 65.7
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 5.1e-19 98.6 67 62.7
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 6.7e-19 98.2 67 62.7
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 8.7e-19 97.8 69 65.2
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 8.7e-19 97.8 67 65.7
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 8.7e-19 97.8 67 65.7
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 8.7e-19 97.8 67 65.7
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 8.7e-19 97.8 68 64.7
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.1e-18 97.4 67 65.7
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 1.1e-18 97.4 67 65.7
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 1.5e-18 97.1 107 46.7
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 1.9e-18 96.7 67 64.2
Sc25g0005820 Simmondsia chinensis HOM05D003115 ORTHO05D003595 1.9e-18 96.7 107 45.8
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 2.5e-18 96.3 67 61.2
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 4.3e-18 95.5 67 64.2
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 5.7e-18 95.1 69 63.8
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 5.7e-18 95.1 112 44.6
HPP92_007258 Vanilla planifolia HOM05D003115 ORTHO05D003595 7.4e-18 94.7 67 61.2
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 1.3e-17 94.0 72 58.3
TPR.G14701 Trifolium pratense HOM05D003115 ORTHO05D003595 1.3e-17 94.0 112 45.5
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 3.7e-17 92.4 67 62.7
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 6.2e-17 91.7 80 53.8
Carub.0001s2400 Capsella rubella HOM05D003115 ORTHO05D003595 1.1e-16 90.9 70 57.1
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 1.1e-16 90.9 80 53.8
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 6.9e-16 88.2 73 58.9
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 6.9e-16 88.2 136 39.7
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 6.9e-16 88.2 72 56.9
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 6.9e-16 88.2 72 56.9
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 6.9e-16 88.2 72 56.9
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 9.0e-16 87.8 72 56.9
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 1.2e-15 87.4 79 57.0
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 1.5e-15 87.0 109 47.7
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 1.5e-15 87.0 72 55.6
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 1.5e-15 87.0 72 55.6
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 1.5e-15 87.0 68 57.4
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 2.0e-15 86.7 120 40.0
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 2.0e-15 86.7 107 41.1
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 2.6e-15 86.3 107 41.1
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 4.5e-15 85.5 79 53.2
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 4.5e-15 85.5 67 56.7
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 1.7e-14 83.6 70 57.1
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 3.8e-14 82.4 67 56.7
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 1.1e-13 80.9 70 54.3
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 3.2e-13 79.3 107 40.2
TPR.G31177 Trifolium pratense HOM05D003115 ORTHO05D003595 3.2e-13 79.3 96 45.8
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 4.2e-13 79.0 108 41.7
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 4.2e-13 79.0 113 38.9
A09p40410 Brassica napus HOM05D003115 ORTHO05D019968 5.5e-13 78.6 76 51.3
BraA09t39537Z Brassica rapa HOM05D003115 ORTHO05D019968 5.5e-13 78.6 76 51.3
BolC5t31124H Brassica oleracea HOM05D003115 ORTHO05D019968 1.6e-12 77.0 89 47.2
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 3.0e-11 72.8 107 37.4
Nitab4.5_0000697g0090 Nicotiana tabacum HOM05D003115 ORTHO05D003595 1.5e-10 70.5 132 35.6
HPP92_007267 Vanilla planifolia HOM05D003115 ORTHO05D003595 1.5e-10 70.5 71 45.1
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 2.5e-10 69.7 135 33.3
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 2.2e-09 66.6 83 43.4
Hma1.2p1_0039F.1_g024580 Hydrangea macrophylla HOM05D003115 ORTHO05D003595 2.8e-09 66.2 46 58.7
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 6.3e-09 65.1 82 37.8
Cre10.g461000 Chlamydomonas reinhardtii HOM05D003115 ORTHO05D003595 5.9e-07 58.5 67 41.8


User provided reference genes

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