Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 6.3e-255 883.6 455 100.0
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 4.8e-130 468.8 497 51.5
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 9.1e-129 464.5 508 51.0
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 1.7e-127 460.3 506 50.4
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 1.9e-126 456.8 497 50.3
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 6.1e-125 451.8 498 49.6
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 1.2e-123 447.6 497 49.7
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 2.0e-123 446.8 524 48.3
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 3.4e-123 446.0 503 49.9
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 4.4e-123 445.7 499 49.3
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 9.8e-123 444.5 499 49.3
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 8.3e-122 441.4 498 49.0
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 1.1e-121 441.0 433 54.3
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 1.4e-121 440.7 499 49.5
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 3.1e-121 439.5 500 49.2
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 4.1e-121 439.1 499 49.3
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 7.0e-121 438.3 497 50.1
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 5.9e-120 435.3 497 48.9
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 5.9e-120 435.3 497 49.9
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.0e-119 434.5 497 48.9
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 2.3e-119 433.3 497 49.5
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 6.5e-119 431.8 496 47.8
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 1.5e-118 430.6 498 48.4
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 1.9e-118 430.3 497 48.7
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 3.3e-118 429.5 497 51.1
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 5.5e-118 428.7 502 47.0
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 1.2e-117 427.6 498 47.4
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 2.1e-117 426.8 501 46.9
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.0e-116 424.5 520 46.7
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 1.8e-116 423.7 492 49.0
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 4.0e-116 422.5 505 46.7
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 4.0e-116 422.5 506 47.6
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 1.5e-115 420.6 505 47.9
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 2.0e-115 420.2 497 47.5
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 3.4e-115 419.5 497 48.1
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 5.7e-115 418.7 501 46.3
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 5.7e-115 418.7 498 47.2
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 4.9e-114 415.6 507 47.3
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 8.3e-114 414.8 497 47.3
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 1.8e-113 413.7 517 44.7
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 1.8e-113 413.7 497 46.9
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 1.8e-113 413.7 497 48.1
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 1.2e-112 411.0 498 47.0
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 1.6e-112 410.6 507 46.4
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 3.5e-112 409.5 497 46.9
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 5.9e-112 408.7 507 47.3
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 7.8e-112 408.3 498 47.4
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 5.0e-111 405.6 499 48.9
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 1.1e-110 404.4 504 46.4
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 1.9e-110 403.7 497 45.5
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 3.3e-110 402.9 504 46.2
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 7.3e-110 401.7 498 47.4
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 1.2e-109 401.0 492 47.8
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 1.2e-109 401.0 499 47.9
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 2.1e-109 400.2 506 45.7
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 2.8e-109 399.8 499 46.9
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 6.1e-109 398.7 501 45.5
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 8.0e-109 398.3 488 46.7
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 1.0e-108 397.9 503 45.9
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 1.8e-108 397.1 499 45.5
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 6.8e-108 395.2 543 44.2
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 6.8e-108 395.2 489 46.8
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 8.9e-108 394.8 498 47.8
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 2.6e-107 393.3 502 44.8
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 2.6e-107 393.3 502 45.8
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 5.8e-107 392.1 497 44.7
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 7.5e-107 391.7 506 44.7
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 1.7e-106 390.6 502 45.2
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 3.2e-105 386.3 452 48.9
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 1.2e-104 384.4 498 45.4
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 3.5e-104 382.9 502 44.8
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 6.0e-104 382.1 498 45.0
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 1.0e-103 381.3 554 41.3
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 2.3e-103 380.2 511 44.0
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 1.1e-102 377.9 486 44.4
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 1.5e-102 377.5 448 46.7
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 2.5e-102 376.7 502 44.0
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 9.8e-99 364.8 403 48.1
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 2.2e-98 363.6 531 42.7
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 2.9e-98 363.2 554 41.3
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 2.9e-98 363.2 505 43.4
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 1.9e-97 360.5 414 48.6
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 4.1e-97 359.4 505 41.6
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 7.0e-97 358.6 486 42.8
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 1.2e-96 357.8 500 42.4
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 1.6e-96 357.5 500 42.4
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.3e-95 354.4 400 49.0
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 1.7e-95 354.0 500 42.2
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 9.9e-91 338.2 500 41.6
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 3.9e-87 326.2 330 51.8
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 1.9e-86 323.9 330 51.5
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 2.4e-84 317.0 416 45.0
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 2.4e-84 317.0 452 46.0
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 1.5e-83 314.3 404 45.0
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 4.3e-78 296.2 458 43.9
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 5.6e-78 295.8 567 35.6
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 9.0e-76 288.5 515 36.5
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.5e-75 287.7 509 36.1
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 2.7e-72 276.9 498 36.1
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 3.0e-71 273.5 448 37.3
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 2.8e-61 240.4 511 31.9
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 5.1e-47 193.0 251 43.4
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 5.7e-46 189.5 170 53.5
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 2.8e-45 187.2 523 29.8
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 3.7e-45 186.8 150 60.0
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 1.1e-44 185.3 157 58.0
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 6.9e-44 182.6 254 44.1
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 9.4e-41 172.2 263 41.4
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 8.5e-34 149.1 375 32.5
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 4.2e-33 146.7 206 43.7
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 5.7e-30 136.3 506 25.1
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 8.2e-29 132.5 206 37.9
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 1.1e-28 132.1 526 26.2
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 7.7e-27 125.9 149 48.3
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 2.1e-24 117.9 120 52.5
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 2.7e-24 117.5 144 45.1
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 6.1e-24 116.3 136 47.1
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 3.6e-16 90.5 430 24.9
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 3.6e-16 90.5 71 60.6
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 4.8e-13 80.1 98 44.9
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 2.4e-12 77.8 70 54.3
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 4.5e-11 73.6 70 51.4
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 4.5e-11 73.6 70 51.4
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 6.1e-08 63.2 104 37.5
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 5.7e-06 56.6 62 45.2
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 7.5e-06 56.2 95 35.8


User provided reference genes

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