Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI16668 Sapria himalayana HOM05D003697 ORTHO05D005452 0.0e+00 1991.5 1019 100.0
Manes.10G121900 Manihot esculenta HOM05D003697 ORTHO05D005452 0.0e+00 1198.7 1010 62.6
Potri.003G018900 Populus trichocarpa HOM05D003697 ORTHO05D005452 0.0e+00 1173.7 999 61.5
Cfa005504 Carpinus fangiana HOM05D003697 ORTHO05D005452 0.0e+00 1157.1 996 60.2
Haze_01738 Corylus avellana HOM05D003697 ORTHO05D005452 0.0e+00 1156.4 972 61.2
QL02p099301 Quercus lobata HOM05D003697 ORTHO05D005452 0.0e+00 1149.8 1015 59.5
COL.COLO4_11778 Corchorus olitorius HOM05D003697 ORTHO05D005452 0.0e+00 1146.0 998 60.2
Thecc.02G088500 Theobroma cacao HOM05D003697 ORTHO05D005452 0.0e+00 1142.1 1000 59.9
TWI14G0038 Tripterygium wilfordii HOM05D003697 ORTHO05D005452 0.0e+00 1142.1 1025 59.0
Prupe.1G572000 Prunus persica HOM05D003697 ORTHO05D005452 0.0e+00 1140.6 992 59.8
Sabra03G0010400 Salix brachista HOM05D003697 ORTHO05D005452 0.0e+00 1138.3 1091 56.2
Duzib248G1637 Durio zibethinus HOM05D003697 ORTHO05D005452 0.0e+00 1128.6 997 59.5
MD15G1427500 Malus domestica HOM05D003697 ORTHO05D005452 0.0e+00 1124.8 993 58.7
Gorai.012G151700 Gossypium raimondii HOM05D003697 ORTHO05D005452 0.0e+00 1121.7 997 58.8
Gohir.D04G163800 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1120.9 997 58.8
Gohir.A04G121300 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1117.8 997 58.7
MD08G1235900 Malus domestica HOM05D003697 ORTHO05D005452 0.0e+00 1115.1 995 58.5
Gorai.008G028000 Gossypium raimondii HOM05D003697 ORTHO05D005452 0.0e+00 1114.4 1000 58.9
Gohir.A12G027900 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1112.4 1000 59.1
Hma1.2p1_0217F.1_g092200 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 0.0e+00 1103.2 995 58.0
Ciclev10000024m.g Citrus clementina HOM05D003697 ORTHO05D005452 0.0e+00 1102.0 1017 57.4
FvH4_5g28990 Fragaria vesca HOM05D003697 ORTHO05D005452 0.0e+00 1100.5 1002 58.6
Dinv24296 Davidia involucrata HOM05D003697 ORTHO05D005452 0.0e+00 1096.6 1001 57.8
GSVIVG01022867001 Vitis vinifera HOM05D003697 ORTHO05D005452 0.0e+00 1092.8 1026 57.5
Atru.chr3.1599 Acer truncatum HOM05D003697 ORTHO05D005452 0.0e+00 1088.9 1001 57.1
CANSAT11G1101 Cannabis sativa HOM05D003697 ORTHO05D005452 0.0e+00 1088.6 998 58.4
RcHm_v2.0_Chr7g0221551 Rosa chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1088.6 1002 57.8
FAN08G0197 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1085.9 1002 58.0
TAR381G0967 Trochodendron aralioides HOM05D003697 ORTHO05D005452 0.0e+00 1084.7 1007 57.2
FAN04G3000 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1084.3 1026 56.9
FAN13G2190 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1075.8 947 59.0
Actinidia26154 Actinidia chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1075.1 1022 56.7
Oeu027795.2 Olea europaea HOM05D003697 ORTHO05D005452 6.3e-311 1070.8 1025 55.8
Migut.B00820 Erythranthe guttata HOM05D003697 ORTHO05D005452 6.9e-310 1067.4 985 56.5
Eucgr.I02739 Eucalyptus grandis HOM05D003697 ORTHO05D005452 1.1e-307 1060.1 1012 56.6
FAN18G2119 Fragaria x ananassa HOM05D003697 ORTHO05D005452 1.1e-304 1050.0 1002 56.8
Lalb_Chr13g0295701 Lupinus albus HOM05D003697 ORTHO05D005452 9.6e-304 1047.0 973 56.0
MSTRG.20304 Avicennia marina HOM05D003697 ORTHO05D005452 3.7e-303 1045.0 985 56.4
Sed0005890 Sechium edule HOM05D003697 ORTHO05D005452 3.7e-303 1045.0 1005 55.0
ClCG05G009570 Citrullus lanatus HOM05D003697 ORTHO05D005452 1.1e-302 1043.5 951 57.3
MELO3C019456.2 Cucumis melo HOM05D003697 ORTHO05D005452 1.4e-302 1043.1 983 56.4
SGA_v2.0_scaffold110G31335 Striga asiatica HOM05D003697 ORTHO05D005452 1.8e-302 1042.7 1024 54.3
Rhsim05G0119800 Rhododendron simsii HOM05D003697 ORTHO05D005452 2.4e-302 1042.3 1020 54.8
PGR142G1992 Punica granatum HOM05D003697 ORTHO05D005452 6.9e-302 1040.8 1006 55.4
CSS0042528 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D005452 2.6e-301 1038.9 977 57.0
CsaV3_3G019150 Cucumis sativus L. HOM05D003697 ORTHO05D005452 2.9e-300 1035.4 985 55.5
Lsat_1_v5_gn_9_118481 Lactuca sativa HOM05D003697 ORTHO05D005452 4.2e-299 1031.6 983 56.3
Sc02g0002740 Simmondsia chinensis HOM05D003697 ORTHO05D005452 1.8e-297 1026.2 1006 55.0
HanXRQChr09g0249001 Helianthus annuus HOM05D003697 ORTHO05D005452 5.1e-297 1024.6 994 55.0
ECA240G1790 Erigeron canadensis HOM05D003697 ORTHO05D005452 3.3e-296 1021.9 985 55.8
Nn1g08409 Nelumbo nucifera HOM05D003697 ORTHO05D005452 3.3e-296 1021.9 1002 54.8
Lj6g0024422 Lotus japonicus HOM05D003697 ORTHO05D005452 7.4e-296 1020.8 968 56.2
PSO017G4515 Papaver somniferum HOM05D003697 ORTHO05D005452 2.8e-295 1018.8 989 54.2
SalBow7G4621 Salvia bowleyana HOM05D003697 ORTHO05D005452 8.2e-295 1017.3 1014 54.6
Glyma.08G127200 Glycine max HOM05D003697 ORTHO05D005452 1.4e-294 1016.5 984 54.4
Nitab4.5_0000816g0140 Nicotiana tabacum HOM05D003697 ORTHO05D005452 1.4e-294 1016.5 999 55.3
Glyma.05G168600 Glycine max HOM05D003697 ORTHO05D005452 1.8e-294 1016.1 987 54.5
Glyma.08G187500 Glycine max HOM05D003697 ORTHO05D005452 6.9e-294 1014.2 988 54.9
Aqoxy5G02635 Aquilegia oxysepala HOM05D003697 ORTHO05D005452 4.5e-293 1011.5 997 53.4
Sopen01g046450 Solanum pennellii HOM05D003697 ORTHO05D005452 4.5e-293 1011.5 997 54.6
PSO170G2453 Papaver somniferum HOM05D003697 ORTHO05D005452 1.3e-292 1010.0 989 53.9
Solyc01g104040.4 Solanum lycopersicum HOM05D003697 ORTHO05D005452 1.4e-291 1006.5 996 54.3
Nitab4.5_0008466g0010 Nicotiana tabacum HOM05D003697 ORTHO05D005452 2.5e-291 1005.7 999 54.9
TPR.G2085 Trifolium pratense HOM05D003697 ORTHO05D005452 3.9e-289 998.4 973 54.8
BcaC08g46557 Brassica carinata HOM05D003697 ORTHO05D005452 4.3e-288 995.0 996 53.1
Ca_00071_v3 Cicer arietinum L. HOM05D003697 ORTHO05D005452 6.3e-287 991.1 1001 53.9
Medtr2g006960 Medicago truncatula HOM05D003697 ORTHO05D005452 1.1e-286 990.3 974 54.4
EL10Ac4g08781 Beta vulgaris HOM05D003697 ORTHO05D005452 2.4e-286 989.2 988 52.8
THA.LOC104801984 Tarenaya hassleriana HOM05D003697 ORTHO05D005452 2.4e-286 989.2 1028 52.6
Thhalv10018004m.g Eutrema salsugineum HOM05D003697 ORTHO05D005452 4.1e-286 988.4 996 53.6
CARHR064520 Cardamine hirsuta HOM05D003697 ORTHO05D005452 2.6e-285 985.7 992 53.5
Aa31LG4G9290 Aethionema arabicum HOM05D003697 ORTHO05D005452 5.9e-285 984.6 993 53.1
BolC6t39589H Brassica oleracea HOM05D003697 ORTHO05D005452 1.0e-284 983.8 996 52.7
ATR1136G197 Amborella trichopoda HOM05D003697 ORTHO05D005452 1.3e-284 983.4 997 52.5
arahy.Tifrunner.gnm1.ann1.IR21Q7 Arachis hypogaea HOM05D003697 ORTHO05D005452 1.3e-284 983.4 965 54.6
Carub.0002s1810 Capsella rubella HOM05D003697 ORTHO05D005452 2.2e-284 982.6 989 53.4
Sp5g26380 Schrenkiella parvula HOM05D003697 ORTHO05D005452 3.8e-284 981.9 994 53.6
arahy.Tifrunner.gnm1.ann1.6LDV6M Arachis hypogaea HOM05D003697 ORTHO05D005452 6.5e-284 981.1 965 54.2
A07p37570 Brassica napus HOM05D003697 ORTHO05D005452 6.5e-284 981.1 996 52.8
Phvul.006G215600 Phaseolus vulgaris HOM05D003697 ORTHO05D005452 6.5e-284 981.1 966 54.1
C06p45330 Brassica napus HOM05D003697 ORTHO05D005452 3.2e-283 978.8 996 52.7
vmacro19883 Vaccinium macrocarpon HOM05D003697 ORTHO05D005452 1.6e-282 976.5 1075 49.9
BraA07t31318Z Brassica rapa HOM05D003697 ORTHO05D005452 1.4e-281 973.4 999 52.5
AT1G71220 Arabidopsis thaliana HOM05D003697 ORTHO05D005452 3.0e-281 972.2 990 53.2
Peaxi162Scf00011g00526 Petunia axillaris HOM05D003697 ORTHO05D005452 8.8e-281 970.7 974 54.1
AL2G30830 Arabidopsis lyrata HOM05D003697 ORTHO05D005452 9.7e-280 967.2 992 52.9
AUR62042597 Chenopodium quinoa HOM05D003697 ORTHO05D005452 1.9e-275 953.0 985 52.8
BcaB03g14879 Brassica carinata HOM05D003697 ORTHO05D005452 2.6e-272 942.6 996 51.3
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 3.7e-271 938.7 992 51.5
HPP92_015204 Vanilla planifolia HOM05D003697 ORTHO05D005452 9.1e-270 934.1 990 50.2
CAN.G798.12 Capsicum annuum HOM05D003697 ORTHO05D005452 1.6e-269 933.3 1209 45.5
Zm00001eb258320 Zea mays HOM05D003697 ORTHO05D005452 3.2e-259 899.0 1001 49.7
DCAR_006698 Daucus carota HOM05D003697 ORTHO05D005452 8.0e-258 894.4 1000 49.7
VMungo0540G0442 Vigna mungo HOM05D003697 ORTHO05D005452 2.4e-254 882.9 1026 48.1
SEGI_03237 Sequoiadendron giganteum HOM05D003697 ORTHO05D005452 1.2e-253 880.6 1015 48.1
AUR62037329 Chenopodium quinoa HOM05D003697 ORTHO05D005452 4.5e-253 878.6 973 50.2
Ah.04g162670 Amaranthus hybridus HOM05D003697 ORTHO05D005452 1.7e-244 850.1 989 48.4
Psat1g220520 Pisum sativum HOM05D003697 ORTHO05D005452 4.6e-237 825.5 776 56.6
CiPaw.06G146300 Carya illinoinensis HOM05D003697 ORTHO05D005452 4.6e-229 798.9 725 59.4
ECA233G0288 Erigeron canadensis HOM05D003697 ORTHO05D005452 1.9e-203 713.8 605 60.5
Pp3c3_14060 Physcomitrium patens HOM05D003697 ORTHO05D005452 9.6e-203 711.4 979 42.0
Cc02_g22690 Coffea canephora HOM05D003697 ORTHO05D005452 3.4e-200 703.0 555 63.8
Atru.chr3.1607 Acer truncatum HOM05D003697 ORTHO05D005452 1.3e-199 701.0 678 55.5
Lj5A253T35 Lonicera japonica HOM05D003697 ORTHO05D005452 1.5e-195 687.6 606 59.1
unitig_749.g14126 Utricularia gibba HOM05D003697 ORTHO05D005452 2.5e-195 686.8 982 42.2
SMO276G0030 Selaginella moellendorffii HOM05D003697 ORTHO05D005452 3.8e-191 672.9 979 41.5
Mapoly0156s0022 Marchantia polymorpha HOM05D003697 ORTHO05D005452 3.7e-186 656.4 974 41.2
Os02g0664100 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 8.7e-180 635.2 542 60.3
AagrBONN_evm.TU.Sc2ySwM_362.2359 Anthoceros agrestis HOM05D003697 ORTHO05D005452 4.2e-150 536.6 830 39.3
Atru.chr6.584 Acer truncatum HOM05D003697 ORTHO05D005452 4.4e-147 526.6 406 66.3
CBR_g48619 Chara braunii HOM05D003697 ORTHO05D005452 3.1e-145 520.4 1044 34.6
Dinv19381 Davidia involucrata HOM05D003697 ORTHO05D005452 2.6e-131 474.2 507 50.9
Duzib132G0509 Durio zibethinus HOM05D003697 ORTHO05D005452 1.7e-111 408.3 343 60.1
Cpa.g.sc30.4 Carica papaya HOM05D003697 ORTHO05D005452 1.1e-108 399.1 529 44.8
BcaB03g14881 Brassica carinata HOM05D003697 ORTHO05D005452 4.4e-107 393.7 541 43.1
Lalb_Chr20g0123551 Lupinus albus HOM05D003697 ORTHO05D005452 1.3e-106 392.1 321 63.6
Cc02_g22700 Coffea canephora HOM05D003697 ORTHO05D005452 8.6e-103 379.4 442 47.7
Hma1.2p1_0217F.1_g092210 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 1.4e-92 345.5 388 49.0
Psat7g198520 Pisum sativum HOM05D003697 ORTHO05D005452 2.0e-91 341.7 380 49.2
Lj5C253T9 Lonicera japonica HOM05D003697 ORTHO05D005452 3.2e-89 334.3 389 48.3
Gohir.D12G027532 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.3e-77 295.8 224 66.5
PRCOL_00004479 Prasinoderma coloniale HOM05D003697 ORTHO05D005452 2.8e-61 241.5 887 26.4
Cre05.g233303 Chlamydomonas reinhardtii HOM05D003697 ORTHO05D005452 5.1e-55 220.7 875 25.8
MCO01G725 Micromonas commoda HOM05D003697 ORTHO05D005452 6.7e-55 220.3 668 26.8
Psat7g199600 Pisum sativum HOM05D003697 ORTHO05D023078 4.3e-54 217.6 301 42.9
Cpa.g.sc30.5 Carica papaya HOM05D003697 ORTHO05D005452 9.4e-41 173.3 116 75.0
C06p46180 Brassica napus HOM05D003697 ORTHO05D033244 1.8e-39 169.1 178 48.9
C06p46230 Brassica napus HOM05D003697 ORTHO05D033244 1.8e-39 169.1 178 48.9
Psat7g198480 Pisum sativum HOM05D003697 ORTHO05D005452 3.3e-38 164.9 143 56.6
Psat5g083120 Pisum sativum HOM05D003697 ORTHO05D002190 1.8e-36 159.1 194 45.9
Psat0s5727g0040 Pisum sativum HOM05D003697 ORTHO05D033244 1.2e-24 119.8 116 50.0
Psat5g201760 Pisum sativum HOM05D003697 ORTHO05D023078 2.3e-23 115.5 151 41.1
Psat4g083840 Pisum sativum HOM05D003697 ORTHO05D014541 5.2e-23 114.4 148 45.9
Psat1g065720 Pisum sativum HOM05D003697 ORTHO05D002190 2.6e-22 112.1 114 48.2
CSS0043236 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 4.5e-19 101.3 87 58.6
CSS0007988 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.0e-18 100.1 87 57.5
CSS0037322 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.3e-18 99.8 87 57.5
CSS0037751 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.3e-18 99.0 86 57.0
CSS0031021 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 3.8e-18 98.2 87 55.2
CSS0047095 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 5.0e-18 97.8 78 61.5
CSS0010224 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.5e-17 95.5 78 60.3
CSS0032709 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.5e-17 95.5 78 60.3
CSS0045184 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 7.3e-17 94.0 78 59.0
Psat0s625g0080 Pisum sativum HOM05D001068 ORTHO05D002190 1.6e-16 92.8 116 43.1
VMungo0251G1240 Vigna mungo HOM05D000087 ORTHO05D012327 1.6e-16 92.8 57 66.7
Cfa024915 Carpinus fangiana HOM05D003697 ORTHO05D005452 6.1e-16 90.9 372 23.9
Psat1g055240 Pisum sativum HOM05D003697 ORTHO05D023078 4.4e-14 84.7 210 28.6
DCAR_010218 Daucus carota HOM05D003697 ORTHO05D043544 4.9e-13 81.3 200 29.0
Lalb_Chr20g0123541 Lupinus albus HOM05D003697 ORTHO05D005452 1.7e-10 72.8 60 55.0
TPR.G34678 Trifolium pratense HOM05D003697 ORTHO05D014541 1.2e-08 66.6 69 55.1
Lalb_Chr23g0273611 Lupinus albus HOM05D003697 ORTHO05D005452 2.1e-08 65.9 47 68.1
SEGI_14626 Sequoiadendron giganteum HOM05D003697 ORTHO05D012276 1.2e-06 60.1 42 66.7
SEGI_31193 Sequoiadendron giganteum HOM05D000279 ORTHO05D012276 1.2e-06 60.1 42 66.7


User provided reference genes

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