Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 0.0e+00 1101.7 553 100.0
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 2.0e-125 453.8 412 63.3
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 5.5e-120 435.6 395 61.0
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 1.5e-117 427.6 413 58.8
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 4.4e-117 426.0 419 57.3
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 1.1e-115 421.4 419 56.8
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 3.1e-115 419.9 410 58.0
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 7.0e-115 418.7 400 59.2
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 9.1e-115 418.3 409 58.2
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 1.0e-113 414.8 411 57.9
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 1.0e-113 414.8 397 58.7
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 6.5e-113 412.1 419 56.8
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.1e-112 411.4 397 57.9
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 1.9e-112 410.6 398 58.0
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 8.0e-111 405.2 415 55.7
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 1.0e-110 404.8 411 56.4
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 1.0e-110 404.8 414 57.0
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 3.0e-110 403.3 417 56.6
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 6.8e-110 402.1 416 56.2
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 8.8e-110 401.7 414 55.3
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 2.0e-109 400.6 417 56.6
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 2.6e-109 400.2 411 56.2
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 4.4e-109 399.4 414 55.6
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 7.5e-109 398.7 413 56.4
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 7.5e-109 398.7 411 55.0
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 9.8e-109 398.3 411 56.0
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 4.8e-108 396.0 417 54.7
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 4.8e-108 396.0 417 54.7
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 6.3e-108 395.6 412 54.1
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 8.3e-108 395.2 412 54.4
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 1.4e-107 394.4 401 57.9
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 3.1e-107 393.3 400 58.0
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 5.4e-107 392.5 417 54.4
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 7.0e-107 392.1 417 54.2
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 1.6e-106 391.0 407 55.5
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 2.7e-106 390.2 372 59.7
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 3.5e-106 389.8 401 56.1
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 1.7e-105 387.5 441 52.6
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 2.9e-105 386.7 435 53.6
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 1.1e-104 384.8 418 55.0
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 4.2e-104 382.9 421 53.4
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 9.4e-104 381.7 428 52.8
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 3.6e-103 379.8 416 53.1
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 4.7e-103 379.4 414 55.3
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 4.7e-103 379.4 413 52.8
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 3.0e-102 376.7 378 58.2
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 5.2e-102 375.9 406 53.9
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 5.2e-102 375.9 441 53.7
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 1.2e-101 374.8 421 53.7
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 1.2e-101 374.8 400 55.5
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 1.2e-101 374.8 427 51.8
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 1.5e-101 374.4 409 54.5
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 4.4e-101 372.9 393 56.2
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 9.8e-101 371.7 412 54.1
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 9.8e-101 371.7 412 54.9
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 2.8e-100 370.2 415 53.3
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 3.1e-99 366.7 416 53.6
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 4.1e-99 366.3 464 49.4
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 1.2e-98 364.8 410 52.2
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.6e-98 364.4 417 53.5
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 2.7e-98 363.6 405 54.3
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 1.7e-97 360.9 427 50.4
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 6.6e-97 359.0 417 52.3
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 3.3e-96 356.7 409 52.8
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 5.6e-96 355.9 397 53.7
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.2e-95 354.8 374 56.4
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 3.6e-95 353.2 373 54.7
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 4.7e-95 352.8 417 50.8
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 8.9e-94 348.6 372 54.0
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 3.4e-93 346.7 406 52.5
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 4.4e-93 346.3 424 51.2
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 1.3e-92 344.7 414 51.9
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 3.7e-92 343.2 414 49.5
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 2.4e-91 340.5 414 51.7
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 2.4e-91 340.5 406 51.7
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 9.2e-91 338.6 401 51.4
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 1.6e-90 337.8 399 51.6
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 2.0e-90 337.4 398 50.8
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 4.6e-90 336.3 406 51.7
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 1.0e-89 335.1 421 50.1
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 3.9e-89 333.2 376 52.1
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 6.6e-89 332.4 428 48.8
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 1.9e-88 330.9 422 47.9
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 3.3e-88 330.1 418 50.0
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 4.3e-88 329.7 489 45.6
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 2.1e-87 327.4 391 51.7
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 2.1e-87 327.4 400 50.2
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 2.1e-87 327.4 391 51.7
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 3.6e-87 326.6 413 50.4
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 5.8e-85 319.3 424 47.6
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 6.4e-84 315.8 270 63.0
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 2.4e-83 313.9 419 48.4
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 2.4e-83 313.9 418 48.1
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 7.0e-83 312.4 399 49.9
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 1.7e-81 307.8 400 48.0
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 8.6e-81 305.4 417 46.5
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 1.1e-80 305.1 417 46.5
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 9.5e-80 302.0 425 46.1
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 4.7e-79 299.7 389 47.3
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 4.7e-79 299.7 308 57.8
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 8.1e-79 298.9 382 47.1
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.4e-78 298.1 422 46.4
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 1.2e-77 295.0 401 46.9
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 1.5e-77 294.7 423 47.0
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 9.8e-77 292.0 413 44.1
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 2.1e-74 284.3 425 45.9
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 1.3e-73 281.6 416 45.7
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 6.2e-71 272.7 275 60.7
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 4.0e-70 270.0 407 46.2
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 5.2e-70 269.6 304 53.9
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 4.4e-69 266.5 440 41.8
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 1.7e-68 264.6 304 51.6
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 1.4e-67 261.5 262 57.3
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 8.1e-63 245.7 263 58.9
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 1.8e-62 244.6 405 42.0
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 4.0e-62 243.4 327 47.1
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 8.9e-62 242.3 253 54.2
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 4.4e-61 240.0 408 41.4
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 1.1e-59 235.3 267 55.4
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 1.4e-59 235.0 287 51.6
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 3.5e-58 230.3 337 46.0
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 6.0e-58 229.6 270 53.7
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 8.7e-57 225.7 270 52.6
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 1.1e-56 225.3 270 53.3
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 2.5e-56 224.2 268 54.9
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 6.4e-52 209.5 445 37.3
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 1.2e-50 205.3 261 50.6
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 4.6e-50 203.4 380 38.7
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 1.6e-47 194.9 261 47.1
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 2.4e-46 191.0 246 46.7
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 5.3e-46 189.9 344 40.7
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 2.4e-43 181.0 170 55.9
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 3.3e-40 170.6 140 61.4
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 1.3e-39 168.7 188 53.7
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 3.7e-39 167.2 137 61.3
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 1.1e-38 165.6 391 37.3
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 1.7e-36 158.3 163 55.2
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 1.4e-35 155.2 176 53.4
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 1.9e-35 154.8 205 44.9
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 5.0e-28 130.2 134 50.0
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 1.9e-24 118.2 102 57.8
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 6.3e-23 113.2 131 49.6
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 1.8e-17 95.1 101 47.5
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 4.4e-16 90.5 234 36.3
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 1.3e-15 89.0 124 47.6
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 1.4e-09 68.9 108 40.7
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 2.4e-06 58.2 38 63.2
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 5.3e-06 57.0 250 29.6


User provided reference genes

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