Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI16526 Sapria himalayana HOM05D006161 ORTHO05D007483 2.2e-74 282.3 154 100.0
Manes.14G166201 Manihot esculenta HOM05D006161 ORTHO05D007483 1.3e-50 203.4 150 73.3
Potri.012G022200 Populus trichocarpa HOM05D006161 ORTHO05D007483 3.2e-49 198.7 146 74.7
CAN.G523.74 Capsicum annuum HOM05D006161 ORTHO05D007483 5.4e-49 198.0 151 70.9
Oeu047362.1 Olea europaea HOM05D006161 ORTHO05D007483 1.2e-48 196.8 150 72.0
Peaxi162Scf00001g00019 Petunia axillaris HOM05D006161 ORTHO05D007483 1.6e-48 196.4 141 75.9
Atru.chr12.1730 Acer truncatum HOM05D006161 ORTHO05D007483 2.7e-48 195.7 139 75.5
Sopen01g047660 Solanum pennellii HOM05D006161 ORTHO05D007483 3.5e-48 195.3 138 77.5
Ciclev10029442m.g Citrus clementina HOM05D006161 ORTHO05D007483 7.8e-48 194.1 143 74.1
Prupe.8G061800 Prunus persica HOM05D006161 ORTHO05D007483 7.8e-48 194.1 151 70.9
PGSC0003DMG400012586 Solanum tuberosum HOM05D006161 ORTHO05D007483 1.0e-47 193.7 138 77.5
Solyc01g105130.4 Solanum lycopersicum HOM05D006161 ORTHO05D007483 1.3e-47 193.4 138 76.1
Nitab4.5_0003858g0050 Nicotiana tabacum HOM05D006161 ORTHO05D007483 1.7e-47 193.0 138 76.1
Rhsim05G0107700 Rhododendron simsii HOM05D006161 ORTHO05D007483 1.7e-47 193.0 150 71.3
Nitab4.5_0002576g0040 Nicotiana tabacum HOM05D006161 ORTHO05D007483 3.0e-47 192.2 138 75.4
PGR142G0837 Punica granatum HOM05D006161 ORTHO05D007483 5.0e-47 191.4 146 70.5
FvH4_1g26050 Fragaria vesca HOM05D006161 ORTHO05D007483 6.6e-47 191.0 149 71.8
FAN26G2610 Fragaria x ananassa HOM05D006161 ORTHO05D007483 6.6e-47 191.0 149 71.8
MD05G1163200 Malus domestica HOM05D006161 ORTHO05D007483 6.6e-47 191.0 151 70.9
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 8.6e-47 190.7 147 71.4
arahy.Tifrunner.gnm1.ann1.6D7HHK Arachis hypogaea HOM05D006161 ORTHO05D007483 8.6e-47 190.7 141 73.8
arahy.Tifrunner.gnm1.ann1.75PVJ4 Arachis hypogaea HOM05D006161 ORTHO05D007483 8.6e-47 190.7 141 73.8
CsaV3_7G006450 Cucumis sativus L. HOM05D006161 ORTHO05D007483 8.6e-47 190.7 148 70.3
VMungo0251G3203 Vigna mungo HOM05D006161 ORTHO05D007483 8.6e-47 190.7 152 69.7
FAN23G0154 Fragaria x ananassa HOM05D006161 ORTHO05D007483 1.1e-46 190.3 149 71.8
FAN23G2587 Fragaria x ananassa HOM05D006161 ORTHO05D007483 1.1e-46 190.3 149 71.8
FAN28G0148 Fragaria x ananassa HOM05D006161 ORTHO05D007483 1.1e-46 190.3 149 71.8
Eucgr.I02667 Eucalyptus grandis HOM05D006161 ORTHO05D007483 1.5e-46 189.9 143 70.6
MELO3C018647.2 Cucumis melo HOM05D006161 ORTHO05D007483 1.9e-46 189.5 148 70.3
MD10G1152800 Malus domestica HOM05D006161 ORTHO05D007483 1.9e-46 189.5 151 70.2
FAN19G1889 Fragaria x ananassa HOM05D006161 ORTHO05D007483 2.5e-46 189.1 149 71.1
Sed0024565 Sechium edule HOM05D006161 ORTHO05D007483 2.5e-46 189.1 143 70.6
TWI14G1433 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 2.5e-46 189.1 150 70.7
RcHm_v2.0_Chr3g0485521 Rosa chinensis HOM05D006161 ORTHO05D007483 3.3e-46 188.7 148 71.6
EL10Ac9g21470 Beta vulgaris HOM05D006161 ORTHO05D007483 4.3e-46 188.3 148 69.6
CARHR278090 Cardamine hirsuta HOM05D006161 ORTHO05D007483 4.3e-46 188.3 142 70.4
Sc18g0006920 Simmondsia chinensis HOM05D006161 ORTHO05D007483 4.3e-46 188.3 143 70.6
THA.LOC104799966 Tarenaya hassleriana HOM05D006161 ORTHO05D007483 4.3e-46 188.3 140 72.1
AT5G64180 Arabidopsis thaliana HOM05D006161 ORTHO05D007483 5.6e-46 188.0 142 70.4
CSS0044873 Camellia sinensis var. sinensis HOM05D006161 ORTHO05D007483 5.6e-46 188.0 142 73.2
Glyma.05G117900 Glycine max HOM05D006161 ORTHO05D007483 5.6e-46 188.0 148 69.6
Dinv09035 Davidia involucrata HOM05D006161 ORTHO05D007483 7.3e-46 187.6 148 69.6
Sabra15G0004000 Salix brachista HOM05D006161 ORTHO05D007483 7.3e-46 187.6 162 67.3
vmacro19927 Vaccinium macrocarpon HOM05D006161 ORTHO05D007483 7.3e-46 187.6 147 70.7
MD05G1163000 Malus domestica HOM05D006161 ORTHO05D007483 1.2e-45 186.8 151 70.2
SalBow6G1080 Salvia bowleyana HOM05D006161 ORTHO05D007483 1.2e-45 186.8 138 74.6
SalBow6G1732 Salvia bowleyana HOM05D006161 ORTHO05D007483 1.2e-45 186.8 138 74.6
Aa31LG1G17750 Aethionema arabicum HOM05D006161 ORTHO05D007483 1.6e-45 186.4 144 68.1
AL8G41450 Arabidopsis lyrata HOM05D006161 ORTHO05D007483 1.6e-45 186.4 142 69.7
HanXRQChr10g0295861 Helianthus annuus HOM05D006161 ORTHO05D007483 1.6e-45 186.4 139 71.9
Lalb_Chr10g0097811 Lupinus albus HOM05D006161 ORTHO05D007483 2.1e-45 186.0 138 72.5
Medtr4g094242 Medicago truncatula HOM05D006161 ORTHO05D007483 2.1e-45 186.0 138 73.2
BcaB02g09779 Brassica carinata HOM05D006161 ORTHO05D007483 2.8e-45 185.7 142 69.0
C03p62070 Brassica napus HOM05D006161 ORTHO05D007483 2.8e-45 185.7 142 68.3
BolC3t18468H Brassica oleracea HOM05D006161 ORTHO05D007483 2.8e-45 185.7 142 69.0
Thhalv10005060m.g Eutrema salsugineum HOM05D006161 ORTHO05D007483 2.8e-45 185.7 142 69.0
Lsat_1_v5_gn_5_107281 Lactuca sativa HOM05D006161 ORTHO05D007483 2.8e-45 185.7 139 72.7
Sp2g27240 Schrenkiella parvula HOM05D006161 ORTHO05D007483 2.8e-45 185.7 142 69.0
Carub.0008s2497 Capsella rubella HOM05D006161 ORTHO05D007483 3.6e-45 185.3 140 70.0
Migut.B00613 Erythranthe guttata HOM05D006161 ORTHO05D007483 3.6e-45 185.3 138 74.6
Psat7g098400 Pisum sativum HOM05D006161 ORTHO05D007483 4.7e-45 184.9 138 72.5
GSVIVG01003100001 Vitis vinifera HOM05D006161 ORTHO05D007483 4.7e-45 184.9 146 68.5
BraA09t36505Z Brassica rapa HOM05D006161 ORTHO05D007483 6.2e-45 184.5 142 68.3
A09p08560 Brassica napus HOM05D006161 ORTHO05D007483 8.1e-45 184.1 142 68.3
Hund06386 Selenicereus undatus HOM05D006161 ORTHO05D007483 1.4e-44 183.3 142 69.7
MSTRG.16580 Avicennia marina HOM05D006161 ORTHO05D007483 1.8e-44 183.0 150 67.3
Glyma.08G072800 Glycine max HOM05D006161 ORTHO05D007483 1.8e-44 183.0 148 68.2
BolC9t53879H Brassica oleracea HOM05D006161 ORTHO05D007483 2.3e-44 182.6 142 67.6
Phvul.002G208400 Phaseolus vulgaris HOM05D006161 ORTHO05D007483 2.3e-44 182.6 147 68.7
SGA_v2.0_scaffold14G07119 Striga asiatica HOM05D006161 ORTHO05D007483 3.1e-44 182.2 138 71.7
BraA06t26029Z Brassica rapa HOM05D006161 ORTHO05D007483 4.0e-44 181.8 142 68.3
MSTRG.20298 Avicennia marina HOM05D006161 ORTHO05D007483 6.8e-44 181.0 146 68.5
C09p09680 Brassica napus HOM05D006161 ORTHO05D007483 6.8e-44 181.0 142 66.9
AUR62013116 Chenopodium quinoa HOM05D006161 ORTHO05D007483 6.8e-44 181.0 148 66.2
Aqoxy3G03670 Aquilegia oxysepala HOM05D006161 ORTHO05D007483 8.9e-44 180.6 146 67.8
CANSAT11G1086 Cannabis sativa HOM05D006161 ORTHO05D007483 1.2e-43 180.3 138 70.3
ECA234G1571 Erigeron canadensis HOM05D006161 ORTHO05D007483 2.0e-43 179.5 138 69.6
MD00G1096800 Malus domestica HOM05D006161 ORTHO05D007483 4.4e-43 178.3 152 68.4
BcaC01g02675 Brassica carinata HOM05D006161 ORTHO05D007483 5.8e-43 177.9 142 66.9
PSO017G6730 Papaver somniferum HOM05D006161 ORTHO05D007483 2.4e-41 172.6 146 66.4
PSO478G0074 Papaver somniferum HOM05D006161 ORTHO05D007483 2.4e-41 172.6 146 66.4
CDE04G2984 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 7.1e-41 171.0 142 65.5
Lj5P240T24 Lonicera japonica HOM05D006161 ORTHO05D007483 2.7e-40 169.1 126 73.0
TAR622G1105 Trochodendron aralioides HOM05D006161 ORTHO05D007483 4.6e-40 168.3 146 63.7
Cfa005604 Carpinus fangiana HOM05D006161 ORTHO05D007483 1.3e-39 166.8 146 64.4
Os12g0502100 Oryza sativa ssp. japonica HOM05D006161 ORTHO05D007483 2.3e-39 166.0 136 64.7
ATR0177G010 Amborella trichopoda HOM05D006161 ORTHO05D007483 5.6e-38 161.4 142 62.0
Lj4g0015467 Lotus japonicus HOM05D006161 ORTHO05D007483 7.3e-38 161.0 141 64.5
ECA236G0554 Erigeron canadensis HOM05D006161 ORTHO05D007483 6.2e-37 157.9 138 62.3
A06p30900 Brassica napus HOM05D006161 ORTHO05D007483 2.3e-36 156.0 142 60.6
ClCG09G015360 Citrullus lanatus HOM05D006161 ORTHO05D007483 3.1e-36 155.6 149 61.1
unitig_8.g3487 Utricularia gibba HOM05D006161 ORTHO05D007483 2.0e-35 152.9 208 48.6
Cc02_g21600 Coffea canephora HOM05D006161 ORTHO05D007483 3.4e-35 152.1 147 61.9
CiPaw.05G036100 Carya illinoinensis HOM05D006161 ORTHO05D007483 2.9e-34 149.1 138 63.0
Cpa.g.sc42.64 Carica papaya HOM05D006161 ORTHO05D007483 1.6e-32 143.3 143 59.4
Sabra05G0140100 Salix brachista HOM05D006161 ORTHO05D007483 1.6e-32 143.3 123 65.0
Actinidia00265 Actinidia chinensis HOM05D006161 ORTHO05D007483 3.0e-31 139.0 137 61.3
Lj6g0024224 Lotus japonicus HOM05D006161 ORTHO05D007483 3.0e-31 139.0 141 59.6
QL11p020678 Quercus lobata HOM05D006161 ORTHO05D007483 5.1e-31 138.3 116 66.4
Nn4g23459 Nelumbo nucifera HOM05D006161 ORTHO05D007483 1.1e-30 137.1 139 58.3
Haze_10694 Corylus avellana HOM05D006161 ORTHO05D007483 1.5e-30 136.7 108 68.5
CDE04G3544 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 5.6e-30 134.8 139 56.1
Ca_18349_v3 Cicer arietinum L. HOM05D006161 ORTHO05D007483 4.7e-29 131.7 146 54.8
Gohir.A12G014900 Gossypium hirsutum HOM05D006161 ORTHO05D007483 4.7e-29 131.7 144 57.6
Mapoly0094s0011 Marchantia polymorpha HOM05D006161 ORTHO05D007483 1.1e-28 130.6 140 50.7
AagrBONN_evm.TU.Sc2ySwM_117.171 Anthoceros agrestis HOM05D006161 ORTHO05D007483 2.4e-28 129.4 142 49.3
DCAR_001788 Daucus carota HOM05D006161 ORTHO05D007483 2.0e-27 126.3 107 63.6
HPP92_024935 Vanilla planifolia HOM05D006161 ORTHO05D007483 5.8e-27 124.8 102 67.6
Zm00001eb409430 Zea mays HOM05D006161 ORTHO05D007483 1.7e-26 123.2 101 65.3
SGA_v2.0_scaffold11G05811 Striga asiatica HOM05D006161 ORTHO05D007483 2.9e-26 122.5 107 62.6
Potri.015G005600 Populus trichocarpa HOM05D006161 ORTHO05D007483 4.9e-26 121.7 146 52.7
Hma1.2p1_0704F.1_g206700 Hydrangea macrophylla HOM05D006161 ORTHO05D007483 8.4e-26 120.9 107 62.6
Zm00001eb138120 Zea mays HOM05D006161 ORTHO05D007483 2.4e-25 119.4 111 58.6
CDE07G1624 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 3.2e-25 119.0 89 76.4
TWI14G1282 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 5.4e-25 118.2 171 47.4
Duzib132G0386 Durio zibethinus HOM05D006161 ORTHO05D007483 2.3e-23 112.8 144 51.4
SMO116G0092 Selaginella moellendorffii HOM05D006161 ORTHO05D007483 3.9e-23 112.1 136 44.1
Gohir.D12G015300 Gossypium hirsutum HOM05D006161 ORTHO05D007483 7.3e-22 107.8 144 50.0
Gorai.008G015400 Gossypium raimondii HOM05D006161 ORTHO05D007483 7.3e-22 107.8 144 50.0
Thecc.02G139200 Theobroma cacao HOM05D006161 ORTHO05D007483 3.1e-20 102.4 144 48.6
arahy.Tifrunner.gnm1.ann1.A44469 Arachis hypogaea HOM05D006161 ORTHO05D007483 2.6e-19 99.4 80 71.2
COL.COLO4_13985 Corchorus olitorius HOM05D006161 ORTHO05D007483 4.9e-18 95.1 127 49.6
arahy.Tifrunner.gnm1.ann1.HFW61Q Arachis hypogaea HOM05D006161 ORTHO05D007483 1.5e-14 83.6 67 67.2
Pp3c24_330 Physcomitrium patens HOM05D006161 ORTHO05D007483 8.4e-10 67.8 142 33.8
CBR_g70737 Chara braunii HOM05D006161 ORTHO05D007483 7.1e-09 64.7 145 31.7
TPR.G10469 Trifolium pratense HOM05D006161 ORTHO05D007483 1.8e-07 60.1 45 62.2
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 1.5e-06 57.0 42 66.7
VMungo0540G0821 Vigna mungo HOM05D006161 ORTHO05D007483 3.3e-06 55.8 40 67.5
Actinidia23993 Actinidia chinensis HOM05D006161 ORTHO05D007483 4.3e-06 55.5 126 35.7


User provided reference genes

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