Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI15728 Sapria himalayana HOM05D006853 ORTHO05D008906 2.9e-143 511.9 265 100.0
Lj6P771T55 Lonicera japonica HOM05D006853 ORTHO05D008906 2.7e-64 249.6 266 53.8
CiPaw.06G096100 Carya illinoinensis HOM05D006853 ORTHO05D008906 3.5e-64 249.2 273 50.2
Haze_23238 Corylus avellana HOM05D006853 ORTHO05D008906 7.8e-64 248.1 273 52.0
Manes.06G077700 Manihot esculenta HOM05D006853 ORTHO05D008906 1.3e-63 247.3 273 54.2
Ciclev10032464m.g Citrus clementina HOM05D006853 ORTHO05D008906 2.5e-62 243.0 245 52.7
Potri.010G134600 Populus trichocarpa HOM05D006853 ORTHO05D008906 2.5e-62 243.0 273 50.2
CSS0003455 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 4.3e-62 242.3 267 51.3
Sabra10G0103400 Salix brachista HOM05D006853 ORTHO05D008906 7.3e-62 241.5 273 50.2
Atru.chr11.1459 Acer truncatum HOM05D006853 ORTHO05D008906 1.6e-61 240.4 265 51.3
Atru.chr11.1493 Acer truncatum HOM05D006853 ORTHO05D008906 1.6e-61 240.4 265 51.3
QL03p047845 Quercus lobata HOM05D006853 ORTHO05D008906 2.1e-61 240.0 244 54.9
COL.COLO4_27747 Corchorus olitorius HOM05D006853 ORTHO05D008906 2.8e-61 239.6 272 48.2
Hma1.2p1_0762F.1_g214380 Hydrangea macrophylla HOM05D006853 ORTHO05D008906 3.6e-61 239.2 266 51.9
Cpa.g.sc53.10 Carica papaya HOM05D006853 ORTHO05D008906 8.1e-61 238.0 271 49.4
Cfa009867 Carpinus fangiana HOM05D006853 ORTHO05D008906 1.1e-60 237.7 249 53.0
CSS0047872 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 1.8e-60 236.9 274 50.0
Actinidia31918 Actinidia chinensis HOM05D006853 ORTHO05D006634 4.0e-60 235.7 265 49.8
TAR624G1108 Trochodendron aralioides HOM05D006853 ORTHO05D008906 4.0e-60 235.7 243 54.7
Thecc.02G317700 Theobroma cacao HOM05D006853 ORTHO05D008906 2.0e-59 233.4 261 52.1
Duzib268G1722 Durio zibethinus HOM05D006853 ORTHO05D008906 3.4e-59 232.6 245 53.5
PGR102G0342 Punica granatum HOM05D006853 ORTHO05D008906 4.4e-59 232.3 272 50.4
CAN.G184.17 Capsicum annuum HOM05D006853 ORTHO05D008906 7.6e-59 231.5 266 49.2
TWI31G0390 Tripterygium wilfordii HOM05D006853 ORTHO05D008906 7.6e-59 231.5 258 49.2
SalBow8G0220 Salvia bowleyana HOM05D006853 ORTHO05D008906 9.9e-59 231.1 269 49.1
Sed0015072 Sechium edule HOM05D006853 ORTHO05D008906 2.9e-58 229.6 249 52.2
Rhsim09G0117300 Rhododendron simsii HOM05D006853 ORTHO05D008906 3.8e-58 229.2 271 48.0
Oeu024136.2 Olea europaea HOM05D006853 ORTHO05D008906 8.4e-58 228.0 269 49.4
Potri.008G110700 Populus trichocarpa HOM05D006853 ORTHO05D008906 8.4e-58 228.0 273 48.0
SalBow8G1387 Salvia bowleyana HOM05D006853 ORTHO05D008906 8.4e-58 228.0 269 48.7
Nitab4.5_0000027g0460 Nicotiana tabacum HOM05D006853 ORTHO05D008906 2.4e-57 226.5 272 48.9
Gohir.A03G107900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 3.2e-57 226.1 246 50.4
Nitab4.5_0010998g0020 Nicotiana tabacum HOM05D006853 ORTHO05D008906 3.2e-57 226.1 272 49.3
Solyc05g010290.3 Solanum lycopersicum HOM05D006853 ORTHO05D008906 4.2e-57 225.7 272 48.2
Gohir.D02G132900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 2.7e-56 223.0 248 49.2
PGSC0003DMG400025119 Solanum tuberosum HOM05D006853 ORTHO05D008906 3.5e-56 222.6 276 48.2
Peaxi162Scf00188g00063 Petunia axillaris HOM05D006853 ORTHO05D008906 4.6e-56 222.2 234 53.4
MELO3C005171.2 Cucumis melo HOM05D006853 ORTHO05D008906 1.3e-55 220.7 245 51.0
Eucgr.B03092 Eucalyptus grandis HOM05D006853 ORTHO05D008906 1.3e-55 220.7 273 48.4
Cc11_g11200 Coffea canephora HOM05D006853 ORTHO05D008906 2.3e-55 219.9 226 55.3
HanXRQChr08g0214781 Helianthus annuus HOM05D006853 ORTHO05D008906 3.9e-55 219.2 266 46.6
Sopen05g006060 Solanum pennellii HOM05D006853 ORTHO05D008906 3.9e-55 219.2 272 47.4
PSO541G5551 Papaver somniferum HOM05D006853 ORTHO05D008906 5.1e-55 218.8 259 47.9
MSTRG.7709 Avicennia marina HOM05D006853 ORTHO05D008906 6.6e-55 218.4 270 46.3
ClCG01G007410 Citrullus lanatus HOM05D006853 ORTHO05D008906 1.5e-54 217.2 246 50.4
Prupe.1G299000 Prunus persica HOM05D006853 ORTHO05D006634 1.5e-54 217.2 248 50.4
Oeu054573.1 Olea europaea HOM05D006853 ORTHO05D008906 3.3e-54 216.1 245 49.8
Oeu054575.1 Olea europaea HOM05D006853 ORTHO05D008906 3.3e-54 216.1 245 49.8
Oeu054577.1 Olea europaea HOM05D006853 ORTHO05D008906 4.3e-54 215.7 245 50.2
CsaV3_5G018880 Cucumis sativus L. HOM05D006853 ORTHO05D008906 5.6e-54 215.3 249 49.8
Aa31LG2G6790 Aethionema arabicum HOM05D006853 ORTHO05D008906 7.3e-54 214.9 230 50.4
BcaB07g30639 Brassica carinata HOM05D006853 ORTHO05D008906 9.6e-54 214.5 231 48.5
CANSAT64G2393 Cannabis sativa HOM05D006853 ORTHO05D008906 9.6e-54 214.5 267 46.4
Lsat_1_v5_gn_8_37640 Lactuca sativa HOM05D006853 ORTHO05D008906 1.3e-53 214.2 266 46.6
Hund25134 Selenicereus undatus HOM05D006853 ORTHO05D008906 1.3e-53 214.2 269 45.7
Carub.0005s0328 Capsella rubella HOM05D006853 ORTHO05D008906 1.6e-53 213.8 230 48.3
ECA233G2927 Erigeron canadensis HOM05D006853 ORTHO05D006634 1.6e-53 213.8 241 48.1
MD16G1052100 Malus domestica HOM05D006853 ORTHO05D008906 2.1e-53 213.4 265 48.7
PSO675G5986 Papaver somniferum HOM05D006853 ORTHO05D008906 4.8e-53 212.2 259 47.5
Sp2g14810 Schrenkiella parvula HOM05D006853 ORTHO05D008906 4.8e-53 212.2 230 48.3
Thhalv10004778m.g Eutrema salsugineum HOM05D006853 ORTHO05D008906 8.1e-53 211.5 216 50.9
THA.LOC104801842 Tarenaya hassleriana HOM05D006853 ORTHO05D008906 2.4e-52 209.9 256 46.9
MD13G1053100 Malus domestica HOM05D006853 ORTHO05D008906 5.3e-52 208.8 247 49.4
AT3G25545 Arabidopsis thaliana HOM05D006853 ORTHO05D008906 6.9e-52 208.4 220 50.5
Sc11g0002760 Simmondsia chinensis HOM05D006853 ORTHO05D008906 9.0e-52 208.0 272 46.0
AL5G14010 Arabidopsis lyrata HOM05D006853 ORTHO05D008906 1.2e-51 207.6 233 46.4
BcaB07g30269 Brassica carinata HOM05D006853 ORTHO05D008906 1.5e-51 207.2 214 50.5
C02p52120 Brassica napus HOM05D006853 ORTHO05D008906 2.0e-51 206.8 220 50.5
BolC2t11296H Brassica oleracea HOM05D006853 ORTHO05D008906 2.0e-51 206.8 220 50.5
AUR62007823 Chenopodium quinoa HOM05D006853 ORTHO05D008906 2.6e-51 206.5 272 43.8
FvH4_4g28700 Fragaria vesca HOM05D006853 ORTHO05D008906 2.6e-51 206.5 243 49.8
FAN12G0570 Fragaria x ananassa HOM05D006853 ORTHO05D008906 2.6e-51 206.5 243 49.8
Migut.L01132 Erythranthe guttata HOM05D006853 ORTHO05D006634 4.4e-51 205.7 250 46.8
RcHm_v2.0_Chr4g0436821 Rosa chinensis HOM05D006853 ORTHO05D008906 4.4e-51 205.7 245 48.6
BcaC03g17267 Brassica carinata HOM05D006853 ORTHO05D008906 5.8e-51 205.3 218 50.5
BcaC03g17268 Brassica carinata HOM05D006853 ORTHO05D008906 5.8e-51 205.3 218 50.5
Ah.02g127470 Amaranthus hybridus HOM05D001046 ORTHO05D002934 7.6e-51 204.9 248 48.0
HanXRQChr15g0469081 Helianthus annuus HOM05D006853 ORTHO05D008906 7.6e-51 204.9 211 51.7
CARHR146460 Cardamine hirsuta HOM05D006853 ORTHO05D008906 9.9e-51 204.5 228 47.8
FAN07G1226 Fragaria x ananassa HOM05D006853 ORTHO05D006634 5.4e-49 198.7 243 49.4
Nn7g37287 Nelumbo nucifera HOM05D006853 ORTHO05D008906 7.1e-49 198.4 253 48.6
Actinidia30174 Actinidia chinensis HOM05D006853 ORTHO05D008906 1.8e-44 183.7 191 52.4
Aqoxy5G01341 Aquilegia oxysepala HOM05D006853 ORTHO05D008906 6.9e-44 181.8 225 48.0
unitig_8.g3212 Utricularia gibba HOM05D006853 ORTHO05D008906 2.0e-43 180.3 255 42.7
BraA02t08402Z Brassica rapa HOM05D006853 ORTHO05D008906 1.7e-42 177.2 219 46.1
Dinv16569 Davidia involucrata HOM05D000044 ORTHO05D006634 1.7e-42 177.2 192 52.6
A02p33840 Brassica napus HOM05D006853 ORTHO05D008906 2.2e-42 176.8 219 46.1
SGA_v2.0_scaffold16G07849 Striga asiatica HOM05D006853 ORTHO05D008906 4.9e-42 175.6 246 43.1
Lalb_Chr17g0341651 Lupinus albus HOM05D006853 ORTHO05D008906 6.7e-39 165.2 267 37.8
SEGI_13208 Sequoiadendron giganteum HOM05D006853 ORTHO05D008906 1.5e-38 164.1 228 43.4
Ca_05156_v3 Cicer arietinum L. HOM05D006853 ORTHO05D008906 8.1e-37 158.3 267 37.5
HPP92_020023 Vanilla planifolia HOM05D006853 ORTHO05D008906 4.0e-36 156.0 235 41.3
VMungo1215G2951 Vigna mungo HOM05D006853 ORTHO05D008906 4.0e-36 156.0 246 39.8
Phvul.002G082000 Phaseolus vulgaris HOM05D006853 ORTHO05D008906 6.9e-36 155.2 246 41.5
ATR0721G025 Amborella trichopoda HOM05D006853 ORTHO05D008906 1.7e-34 150.6 245 39.2
Hma1.2p1_0125F.1_g058490 Hydrangea macrophylla HOM05D006853 ORTHO05D008906 3.8e-34 149.4 140 57.9
Medtr5g049260 Medicago truncatula HOM05D006853 ORTHO05D008906 5.5e-33 145.6 268 35.1
Medtr5g049270 Medicago truncatula HOM05D006853 ORTHO05D008906 5.5e-33 145.6 268 35.1
Glyma.01G070150 Glycine max HOM05D006853 ORTHO05D008906 6.0e-32 142.1 268 37.7
Glyma.02G127200 Glycine max HOM05D006853 ORTHO05D008906 6.7e-31 138.7 268 36.9
Lj2g0007836 Lotus japonicus HOM05D000044 ORTHO05D006634 2.5e-30 136.7 246 37.0
BcaC04g21430 Brassica carinata HOM05D006853 ORTHO05D008906 2.0e-27 127.1 156 42.9
arahy.Tifrunner.gnm1.ann1.N8UYM2 Arachis hypogaea HOM05D006853 ORTHO05D008906 2.6e-27 126.7 237 36.3
C09p31840 Brassica napus HOM05D006853 ORTHO05D008906 2.6e-27 126.7 156 42.3
Pp3c1_39830 Physcomitrium patens HOM05D006853 ORTHO05D008906 2.6e-27 126.7 214 36.0
arahy.Tifrunner.gnm1.ann1.QR8D6Y Arachis hypogaea HOM05D006853 ORTHO05D008906 1.0e-26 124.8 237 36.3
GSVIVG01010168001 Vitis vinifera HOM05D000044 ORTHO05D006634 2.3e-23 113.6 227 36.1
Mapoly0008s0082 Marchantia polymorpha HOM05D006853 ORTHO05D008906 2.0e-19 100.5 254 31.1
SMO164G0046 Selaginella moellendorffii HOM05D006853 ORTHO05D008906 5.0e-18 95.9 217 33.2
AagrBONN_evm.TU.Sc2ySwM_368.2648 Anthoceros agrestis HOM05D006853 ORTHO05D008906 6.5e-18 95.5 212 32.5
CDE03G0412 Ceratophyllum demersum HOM05D001926 ORTHO05D002121 6.1e-16 89.0 126 42.1
AL5G13960 Arabidopsis lyrata HOM05D006853 ORTHO05D008906 1.0e-15 88.2 89 49.4
Zm00001eb119820 Zea mays HOM05D006853 ORTHO05D008906 8.8e-15 85.1 218 33.0
Os01g0219000 Oryza sativa ssp. japonica HOM05D006853 ORTHO05D008906 4.3e-14 82.8 218 34.4
Cre01.g037650 Chlamydomonas reinhardtii HOM05D006853 ORTHO05D008906 1.3e-10 71.2 171 33.9
HanXRQChr12g0364531 Helianthus annuus HOM05D006853 ORTHO05D008906 1.7e-10 70.9 104 42.3
Psat2g098640 Pisum sativum HOM05D006853 ORTHO05D008906 3.8e-10 69.7 114 37.7
Psat1g127240 Pisum sativum HOM05D002500 ORTHO05D002587 1.6e-08 64.3 86 40.7


User provided reference genes

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