Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI15627 Sapria himalayana HOM05D000104 ORTHO05D365230 1.1e-65 253.1 121 100.0
Potri.019G021500 Populus trichocarpa HOM05D000104 ORTHO05D006397 3.5e-11 72.0 52 63.5
SHI22773 Sapria himalayana HOM05D000002 ORTHO05D000001 6.6e-10 67.8 38 84.2
Potri.013G048500 Populus trichocarpa HOM05D000104 ORTHO05D006397 1.1e-09 67.0 59 55.9
PGR004G1676 Punica granatum HOM05D000104 ORTHO05D006397 1.5e-09 66.6 47 66.0
Sabra13G0044700 Salix brachista HOM05D000104 ORTHO05D006397 1.9e-09 66.2 55 58.2
Manes.09G147000 Manihot esculenta HOM05D000104 ORTHO05D006397 5.6e-09 64.7 53 58.5
GSVIVG01023393001 Vitis vinifera HOM05D000104 ORTHO05D006397 1.6e-08 63.2 54 57.4
RcHm_v2.0_Chr3g0449401 Rosa chinensis HOM05D000104 ORTHO05D006397 3.6e-08 62.0 43 65.1
arahy.Tifrunner.gnm1.ann1.N8MZL6 Arachis hypogaea HOM05D000104 ORTHO05D006397 6.2e-08 61.2 46 63.0
SHI15483 Sapria himalayana HOM05D000002 ORTHO05D000001 8.1e-08 60.8 30 90.0
Dinv12942 Davidia involucrata HOM05D000104 ORTHO05D006397 1.4e-07 60.1 54 59.3
Nn1g02977 Nelumbo nucifera HOM05D000104 ORTHO05D006397 1.4e-07 60.1 42 66.7
Prupe.6G351600 Prunus persica HOM05D000104 ORTHO05D006397 1.8e-07 59.7 46 63.0
Sabra19G0033000 Salix brachista HOM05D000104 ORTHO05D006397 1.8e-07 59.7 62 51.6
TWI60G0140 Tripterygium wilfordii HOM05D000104 ORTHO05D006397 1.8e-07 59.7 53 56.6
Nitab4.5_0000061g0050 Nicotiana tabacum HOM05D000104 ORTHO05D006397 2.3e-07 59.3 54 59.3
Nitab4.5_0002088g0030 Nicotiana tabacum HOM05D000104 ORTHO05D006397 2.3e-07 59.3 54 59.3
Gohir.A11G245400 Gossypium hirsutum HOM05D000104 ORTHO05D006397 3.1e-07 58.9 82 42.7
TAR362G0360 Trochodendron aralioides HOM05D000104 ORTHO05D006397 3.1e-07 58.9 42 66.7
Gohir.D11G255300 Gossypium hirsutum HOM05D000104 ORTHO05D006397 4.0e-07 58.5 82 41.5
Gorai.007G273900 Gossypium raimondii HOM05D000104 ORTHO05D006397 4.0e-07 58.5 82 41.5
Peaxi162Scf00373g01415 Petunia axillaris HOM05D000104 ORTHO05D006397 4.0e-07 58.5 46 60.9
arahy.Tifrunner.gnm1.ann1.21AGFE Arachis hypogaea HOM05D000104 ORTHO05D006397 5.2e-07 58.2 44 61.4
Hma1.2p1_1336F.1_g276430 Hydrangea macrophylla HOM05D000104 ORTHO05D006397 5.2e-07 58.2 60 50.0
MD04G1232200 Malus domestica HOM05D000104 ORTHO05D006397 5.2e-07 58.2 43 62.8
QL03p029602 Quercus lobata HOM05D000104 ORTHO05D006397 5.2e-07 58.2 55 56.4
CiPaw.08G118700 Carya illinoinensis HOM05D000104 ORTHO05D006397 6.8e-07 57.8 57 54.4
Cc09_g02930 Coffea canephora HOM05D000104 ORTHO05D006397 8.9e-07 57.4 54 53.7
MD00G1149200 Malus domestica HOM05D000104 ORTHO05D006397 8.9e-07 57.4 43 60.5
FvH4_6g01581 Fragaria vesca HOM05D000104 ORTHO05D006397 1.2e-06 57.0 43 60.5
FAN02G0967 Fragaria x ananassa HOM05D000104 ORTHO05D006397 1.2e-06 57.0 43 60.5
FAN05G1722 Fragaria x ananassa HOM05D000104 ORTHO05D006397 1.2e-06 57.0 43 60.5
FAN05G2560 Fragaria x ananassa HOM05D000104 ORTHO05D006397 1.2e-06 57.0 43 60.5
FAN09G4154 Fragaria x ananassa HOM05D000104 ORTHO05D006397 1.2e-06 57.0 43 60.5
FAN14G4089 Fragaria x ananassa HOM05D000104 ORTHO05D006397 1.2e-06 57.0 43 60.5
FAN14G5045 Fragaria x ananassa HOM05D000104 ORTHO05D006397 1.2e-06 57.0 43 60.5
Glyma.10G165000 Glycine max HOM05D000104 ORTHO05D006397 1.2e-06 57.0 43 60.5
Hma1.2p1_1336F.1_g276420 Hydrangea macrophylla HOM05D000104 ORTHO05D006397 1.5e-06 56.6 46 58.7
Duzib128G0174 Durio zibethinus HOM05D000104 ORTHO05D006397 2.6e-06 55.8 54 53.7
VMungo0720G1140 Vigna mungo HOM05D000104 ORTHO05D006397 2.6e-06 55.8 43 60.5
COL.COLO4_15520 Corchorus olitorius HOM05D000104 ORTHO05D006397 3.4e-06 55.5 54 53.7
Lalb_Chr06g0168221 Lupinus albus HOM05D000104 ORTHO05D006397 3.4e-06 55.5 42 61.9
Thecc.05G267600 Theobroma cacao HOM05D000104 ORTHO05D006397 4.4e-06 55.1 53 52.8
Migut.F02058 Erythranthe guttata HOM05D000104 ORTHO05D006397 5.8e-06 54.7 67 44.8
Glyma.20G227200 Glycine max HOM05D000104 ORTHO05D006397 5.8e-06 54.7 43 58.1
Phvul.L001951 Phaseolus vulgaris HOM05D000104 ORTHO05D006397 5.8e-06 54.7 43 58.1
CSS0004215 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006397 7.6e-06 54.3 42 59.5
SalBow1G3403 Salvia bowleyana HOM05D000104 ORTHO05D006397 7.6e-06 54.3 67 44.8
SalBow1G4339 Salvia bowleyana HOM05D000104 ORTHO05D006397 7.6e-06 54.3 67 44.8
Actinidia34760 Actinidia chinensis HOM05D000104 ORTHO05D006397 9.9e-06 53.9 42 57.1
Actinidia38932 Actinidia chinensis HOM05D000104 ORTHO05D006397 9.9e-06 53.9 42 57.1
ECA238G2794 Erigeron canadensis HOM05D000104 ORTHO05D006397 9.9e-06 53.9 54 51.9
Eucgr.H04218 Eucalyptus grandis HOM05D000104 ORTHO05D006397 9.9e-06 53.9 52 51.9
Sc09g0001860 Simmondsia chinensis HOM05D000104 ORTHO05D006397 9.9e-06 53.9 42 59.5


User provided reference genes

Program Settings