Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI15439 Sapria himalayana HOM05D002930 ORTHO05D003283 0.0e+00 3500.3 1775 100.0
Potri.014G137200 Populus trichocarpa HOM05D002930 ORTHO05D003283 0.0e+00 1546.9 1674 54.3
Manes.05G071700 Manihot esculenta HOM05D002930 ORTHO05D003283 0.0e+00 1516.1 1674 52.7
QL12p022973 Quercus lobata HOM05D002930 ORTHO05D003283 0.0e+00 1499.6 1677 52.7
Dinv11268 Davidia involucrata HOM05D002930 ORTHO05D003283 0.0e+00 1492.2 1681 52.1
Duzib138G0507 Durio zibethinus HOM05D002930 ORTHO05D003283 0.0e+00 1485.7 1681 52.6
Thecc.01G286000 Theobroma cacao HOM05D002930 ORTHO05D003283 0.0e+00 1483.8 1673 52.6
Prupe.8G248000 Prunus persica HOM05D002930 ORTHO05D003283 0.0e+00 1483.0 1677 51.9
Gorai.004G215100 Gossypium raimondii HOM05D002930 ORTHO05D003283 0.0e+00 1481.5 1672 51.9
MD03G1271800 Malus domestica HOM05D002930 ORTHO05D003283 0.0e+00 1475.7 1677 51.8
FAN24G0623 Fragaria x ananassa HOM05D002930 ORTHO05D003283 0.0e+00 1474.1 1588 54.2
Haze_04772 Corylus avellana HOM05D002930 ORTHO05D003283 0.0e+00 1471.1 1687 51.9
FAN27G1593 Fragaria x ananassa HOM05D002930 ORTHO05D003283 0.0e+00 1469.9 1667 52.2
Cfa006078 Carpinus fangiana HOM05D002930 ORTHO05D003283 0.0e+00 1468.0 1684 51.8
CiPaw.07G096000 Carya illinoinensis HOM05D002930 ORTHO05D003283 0.0e+00 1467.2 1718 51.5
FvH4_2g24180 Fragaria vesca HOM05D002930 ORTHO05D003283 0.0e+00 1460.7 1667 52.1
FAN15G2723 Fragaria x ananassa HOM05D002930 ORTHO05D003283 0.0e+00 1458.4 1667 51.9
RcHm_v2.0_Chr6g0291991 Rosa chinensis HOM05D002930 ORTHO05D003283 0.0e+00 1455.3 1669 51.8
Atru.chr5.1328 Acer truncatum HOM05D002930 ORTHO05D003283 0.0e+00 1453.3 1669 51.8
Glyma.10G023700 Glycine max HOM05D002930 ORTHO05D003283 0.0e+00 1448.7 1688 51.8
TAR365G0233 Trochodendron aralioides HOM05D002930 ORTHO05D003283 0.0e+00 1445.6 1683 50.6
MD11G1292400 Malus domestica HOM05D002930 ORTHO05D003283 0.0e+00 1443.7 1674 50.8
Phvul.007G168500 Phaseolus vulgaris HOM05D002930 ORTHO05D003283 0.0e+00 1439.5 1705 51.2
Lalb_Chr21g0306621 Lupinus albus HOM05D002930 ORTHO05D003283 0.0e+00 1435.6 1681 51.6
Glyma.02G150200 Glycine max HOM05D002930 ORTHO05D003283 0.0e+00 1434.5 1690 51.3
Sabra14G0103600 Salix brachista HOM05D002930 ORTHO05D003283 0.0e+00 1434.1 1657 52.4
CANSAT25G2793 Cannabis sativa HOM05D002930 ORTHO05D003283 0.0e+00 1433.7 1677 51.0
Psat6g169840 Pisum sativum HOM05D002930 ORTHO05D003283 0.0e+00 1431.8 1687 50.8
arahy.Tifrunner.gnm1.ann1.M1RB0X Arachis hypogaea HOM05D002930 ORTHO05D003283 0.0e+00 1429.8 1690 50.8
TWI59G1251 Tripterygium wilfordii HOM05D002930 ORTHO05D003283 0.0e+00 1427.2 1707 49.3
Oeu047489.1 Olea europaea HOM05D002930 ORTHO05D003283 0.0e+00 1426.8 1682 51.7
Lj5g0012178 Lotus japonicus HOM05D002930 ORTHO05D003283 0.0e+00 1423.7 1704 51.5
Medtr1g089760 Medicago truncatula HOM05D002930 ORTHO05D003283 0.0e+00 1422.9 1672 50.6
MSTRG.17432 Avicennia marina HOM05D002930 ORTHO05D003283 0.0e+00 1420.6 1672 50.7
Eucgr.H01545 Eucalyptus grandis HOM05D002930 ORTHO05D003283 0.0e+00 1416.4 1667 50.2
Peaxi162Scf00941g00113 Petunia axillaris HOM05D002930 ORTHO05D003283 0.0e+00 1412.9 1665 51.0
Gorai.007G133300 Gossypium raimondii HOM05D002930 ORTHO05D003283 0.0e+00 1412.5 1674 50.5
Gohir.D11G124400 Gossypium hirsutum HOM05D002930 ORTHO05D003283 0.0e+00 1410.6 1674 50.5
Gohir.A11G119600 Gossypium hirsutum HOM05D002930 ORTHO05D003283 0.0e+00 1409.8 1657 50.5
TPR.G13301 Trifolium pratense HOM05D002930 ORTHO05D003283 0.0e+00 1407.9 1718 50.2
VMungo0720G1730 Vigna mungo HOM05D002930 ORTHO05D003283 0.0e+00 1407.9 1689 50.3
Nn3g21179 Nelumbo nucifera HOM05D002930 ORTHO05D003283 0.0e+00 1400.6 1663 50.2
SGA_v2.0_scaffold172G39040 Striga asiatica HOM05D002930 ORTHO05D003283 0.0e+00 1394.0 1662 50.1
Solyc09g074110.4 Solanum lycopersicum HOM05D002930 ORTHO05D003283 0.0e+00 1388.2 1665 49.6
CAN.G956.11 Capsicum annuum HOM05D002930 ORTHO05D003283 0.0e+00 1386.7 1667 49.9
THA.LOC104802222 Tarenaya hassleriana HOM05D002930 ORTHO05D003283 0.0e+00 1386.3 1661 49.7
Sopen09g028930 Solanum pennellii HOM05D002930 ORTHO05D003283 0.0e+00 1385.2 1666 49.5
SGA_v2.0_scaffold11G05785 Striga asiatica HOM05D002930 ORTHO05D003283 0.0e+00 1384.8 1670 50.2
SalBow6G0735 Salvia bowleyana HOM05D002930 ORTHO05D003283 0.0e+00 1384.0 1676 49.5
Carub.0004s3076 Capsella rubella HOM05D002930 ORTHO05D003283 0.0e+00 1383.6 1674 49.5
Migut.N02138 Erythranthe guttata HOM05D002930 ORTHO05D003283 0.0e+00 1383.6 1656 49.8
ClCG09G006750 Citrullus lanatus HOM05D002930 ORTHO05D003283 0.0e+00 1382.9 1676 49.2
BolC4t28786H Brassica oleracea HOM05D002930 ORTHO05D003283 0.0e+00 1380.2 1673 49.5
MELO3C015874.2 Cucumis melo HOM05D002930 ORTHO05D003283 0.0e+00 1379.8 1668 48.9
CsaV3_7G028480 Cucumis sativus L. HOM05D002930 ORTHO05D003283 0.0e+00 1379.4 1670 49.2
Sp4g29950 Schrenkiella parvula HOM05D002930 ORTHO05D003283 0.0e+00 1379.4 1674 49.3
AT2G48060 Arabidopsis thaliana HOM05D002930 ORTHO05D003283 0.0e+00 1377.8 1676 49.2
A05p00070 Brassica napus HOM05D002930 ORTHO05D003283 0.0e+00 1377.8 1674 49.0
BraA05t19003Z Brassica rapa HOM05D002930 ORTHO05D003283 0.0e+00 1377.8 1674 49.0
BNapus_Darmor_BZH_scaffold_188p00030 Brassica napus HOM05D002930 ORTHO05D003283 0.0e+00 1377.5 1678 48.9
Sc05g0005220 Simmondsia chinensis HOM05D002930 ORTHO05D003283 0.0e+00 1376.3 1672 49.0
BcaB02g08731 Brassica carinata HOM05D002930 ORTHO05D003283 0.0e+00 1375.5 1678 48.9
AL4G47650 Arabidopsis lyrata HOM05D002930 ORTHO05D003283 0.0e+00 1375.1 1673 49.2
BraA04t18952Z Brassica rapa HOM05D002930 ORTHO05D003283 0.0e+00 1372.8 1673 49.2
BolSC55t61233H Brassica oleracea HOM05D002930 ORTHO05D003283 0.0e+00 1372.5 1678 48.8
Thhalv10001278m.g Eutrema salsugineum HOM05D002930 ORTHO05D003283 0.0e+00 1371.3 1699 48.3
PGR119G1041 Punica granatum HOM05D002930 ORTHO05D003283 0.0e+00 1370.5 1655 49.8
EL10Ac7g17191 Beta vulgaris HOM05D002930 ORTHO05D003283 0.0e+00 1366.7 1694 48.5
BcaC02g12557 Brassica carinata HOM05D002930 ORTHO05D003283 0.0e+00 1355.5 1702 48.3
Sed0017862 Sechium edule HOM05D002930 ORTHO05D003283 0.0e+00 1347.8 1657 48.5
CSS0023451 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 0.0e+00 1346.6 1608 50.1
Aa31LG10G16860 Aethionema arabicum HOM05D002930 ORTHO05D003283 0.0e+00 1342.0 1662 48.0
Hma1.2p1_2318F.1_g319800 Hydrangea macrophylla HOM05D002930 ORTHO05D003283 0.0e+00 1340.9 1582 50.3
Ah.08g212870 Amaranthus hybridus HOM05D002930 ORTHO05D003283 0.0e+00 1340.1 1678 47.7
ECA236G2879 Erigeron canadensis HOM05D002930 ORTHO05D003283 0.0e+00 1340.1 1651 48.2
PSO170G5253 Papaver somniferum HOM05D002930 ORTHO05D003283 0.0e+00 1338.2 1682 47.5
GSVIVG01011059001 Vitis vinifera HOM05D002930 ORTHO05D003283 0.0e+00 1337.0 1617 49.5
Aqoxy2G03186 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 0.0e+00 1332.4 1681 47.5
Aa31LG1G29470 Aethionema arabicum HOM05D002930 ORTHO05D003283 0.0e+00 1331.2 1673 48.0
Ciclev10018445m.g Citrus clementina HOM05D002930 ORTHO05D003283 0.0e+00 1330.1 1620 49.8
Lsat_1_v5_gn_8_55460 Lactuca sativa HOM05D002930 ORTHO05D003283 0.0e+00 1328.9 1641 48.3
PSO302G0276 Papaver somniferum HOM05D002930 ORTHO05D003283 0.0e+00 1328.9 1679 47.1
SalBow3G3307 Salvia bowleyana HOM05D002930 ORTHO05D003283 0.0e+00 1327.4 1661 49.2
CSS0004978 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 0.0e+00 1325.8 1636 49.8
DCAR_018381 Daucus carota HOM05D002930 ORTHO05D003283 0.0e+00 1322.0 1648 47.6
Lsat_1_v5_gn_9_1821 Lactuca sativa HOM05D002930 ORTHO05D003283 0.0e+00 1317.0 1660 48.5
AUR62033688 Chenopodium quinoa HOM05D002930 ORTHO05D003283 0.0e+00 1313.9 1681 47.2
HanXRQChr04g0117981 Helianthus annuus HOM05D002930 ORTHO05D003283 0.0e+00 1308.9 1641 48.3
Sed0024970 Sechium edule HOM05D002930 ORTHO05D003283 0.0e+00 1292.3 1578 48.3
ATR0626G265 Amborella trichopoda HOM05D002930 ORTHO05D003283 0.0e+00 1282.7 1687 46.7
PSO210G3942 Papaver somniferum HOM05D002930 ORTHO05D003283 0.0e+00 1281.5 1695 46.5
Aqoxy5G00565 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 0.0e+00 1278.5 1680 46.4
vmacro14944 Vaccinium macrocarpon HOM05D002930 ORTHO05D003283 0.0e+00 1253.8 1673 46.7
MBI19_g21645_MAGBIO Magnolia biondii HOM05D002930 ORTHO05D003283 0.0e+00 1237.6 1677 45.9
AUR62036777 Chenopodium quinoa HOM05D002930 ORTHO05D003283 0.0e+00 1233.0 1601 46.1
Gohir.D08G203100 Gossypium hirsutum HOM05D002930 ORTHO05D003283 0.0e+00 1229.9 1233 55.3
Hund05360 Selenicereus undatus HOM05D002930 ORTHO05D003283 0.0e+00 1229.2 1609 46.4
HanXRQChr15g0466571 Helianthus annuus HOM05D002930 ORTHO05D003283 0.0e+00 1216.8 1693 44.6
CANSAT54G0439 Cannabis sativa HOM05D002930 ORTHO05D003283 0.0e+00 1213.4 1666 45.0
Zm00001eb131990 Zea mays HOM05D002930 ORTHO05D003283 0.0e+00 1204.9 1702 45.0
GSVIVG01022038001 Vitis vinifera HOM05D002930 ORTHO05D003283 0.0e+00 1204.5 1647 46.4
unitig_744.g24487 Utricularia gibba HOM05D002930 ORTHO05D003283 0.0e+00 1203.7 1618 46.6
Lj9C680G12 Lonicera japonica HOM05D002930 ORTHO05D003283 0.0e+00 1190.3 1658 44.6
PGR083G0736 Punica granatum HOM05D002930 ORTHO05D003283 0.0e+00 1177.5 1694 43.8
Gorai.013G123400 Gossypium raimondii HOM05D002930 ORTHO05D003283 0.0e+00 1172.5 1686 45.2
Gohir.A13G106800 Gossypium hirsutum HOM05D002930 ORTHO05D003283 0.0e+00 1170.6 1683 45.2
Thecc.05G299700 Theobroma cacao HOM05D002930 ORTHO05D003283 0.0e+00 1169.5 1693 44.5
Duzib177G0642 Durio zibethinus HOM05D002930 ORTHO05D003283 0.0e+00 1166.0 1723 43.8
Manes.09G162700 Manihot esculenta HOM05D002930 ORTHO05D003283 0.0e+00 1162.5 1690 43.7
DCAR_012456 Daucus carota HOM05D002930 ORTHO05D003283 0.0e+00 1158.7 1596 44.9
Sabra05G0038400 Salix brachista HOM05D002930 ORTHO05D003283 0.0e+00 1153.7 1666 44.2
Cc02_g32570 Coffea canephora HOM05D002930 ORTHO05D003283 0.0e+00 1145.6 1676 42.4
HPP92_025233 Vanilla planifolia HOM05D002930 ORTHO05D003283 0.0e+00 1145.6 1799 42.4
Glyma.19G238300 Glycine max HOM05D002930 ORTHO05D003283 0.0e+00 1133.6 1654 43.0
TPR.G33213 Trifolium pratense HOM05D002930 ORTHO05D003283 0.0e+00 1130.2 1667 43.5
Potri.005G037700 Populus trichocarpa HOM05D002930 ORTHO05D003283 0.0e+00 1127.1 1663 43.1
Psat3g009520 Pisum sativum HOM05D002930 ORTHO05D003283 0.0e+00 1115.9 1657 42.6
Gohir.D13G110000 Gossypium hirsutum HOM05D002930 ORTHO05D003283 0.0e+00 1114.4 1652 44.3
Eucgr.B02004 Eucalyptus grandis HOM05D002930 ORTHO05D003283 0.0e+00 1112.8 1694 42.7
Lj1g0027310 Lotus japonicus HOM05D002930 ORTHO05D003283 0.0e+00 1110.5 1655 42.5
Medtr7g113930 Medicago truncatula HOM05D002930 ORTHO05D003283 0.0e+00 1108.2 1680 42.4
VMungo0540G0500 Vigna mungo HOM05D002930 ORTHO05D003283 0.0e+00 1097.8 1662 41.9
Phvul.006G095000 Phaseolus vulgaris HOM05D002930 ORTHO05D003283 0.0e+00 1095.1 1663 41.7
Cpa.g.sc9.131 Carica papaya HOM05D002930 ORTHO05D003283 0.0e+00 1086.2 1266 51.3
Hma1.2p1_0628F.1_g191750 Hydrangea macrophylla HOM05D002930 ORTHO05D003283 0.0e+00 1086.2 1765 41.7
Dinv40246 Davidia involucrata HOM05D002930 ORTHO05D003283 1.6e-306 1057.0 1681 42.1
arahy.Tifrunner.gnm1.ann1.MJP89X Arachis hypogaea HOM05D002930 ORTHO05D003283 2.8e-306 1056.2 1646 42.0
DCAR_022250 Daucus carota HOM05D002930 ORTHO05D003283 1.1e-305 1054.3 1674 40.7
arahy.Tifrunner.gnm1.ann1.HQA39L Arachis hypogaea HOM05D002930 ORTHO05D003283 1.8e-305 1053.5 1662 41.8
ECA247G2962 Erigeron canadensis HOM05D002930 ORTHO05D003283 3.7e-303 1045.8 1628 42.1
Actinidia05730 Actinidia chinensis HOM05D002930 ORTHO05D003283 9.2e-302 1041.2 1599 41.8
Nitab4.5_0001323g0140 Nicotiana tabacum HOM05D002930 ORTHO05D003283 9.9e-296 1021.1 1419 46.6
Lj1A43T58 Lonicera japonica HOM05D002930 ORTHO05D003283 1.4e-294 1017.3 1649 40.9
COL.COLO4_13526 Corchorus olitorius HOM05D002930 ORTHO05D003283 1.5e-291 1007.3 1404 45.8
CSS0031973 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 1.7e-287 993.8 1231 48.3
Nitab4.5_0002927g0030 Nicotiana tabacum HOM05D002930 ORTHO05D003283 1.4e-278 964.1 1331 46.2
Lalb_Chr04g0260861 Lupinus albus HOM05D002930 ORTHO05D003283 3.6e-274 949.5 1213 47.3
CARHR143440 Cardamine hirsuta HOM05D002930 ORTHO05D003283 7.7e-232 808.9 1042 48.1
Mapoly0023s0171 Marchantia polymorpha HOM05D002930 ORTHO05D003283 1.7e-231 807.7 1775 34.4
AagrBONN_evm.TU.Sc2ySwM_228.583 Anthoceros agrestis HOM05D002930 ORTHO05D003283 8.0e-229 798.9 1747 34.1
arahy.Tifrunner.gnm1.ann1.K2UAY4 Arachis hypogaea HOM05D002930 ORTHO05D003283 5.9e-224 782.7 793 56.1
Pp3c3_17170 Physcomitrium patens HOM05D002930 ORTHO05D003283 2.8e-218 763.8 1739 32.8
Ca_09378_v3 Cicer arietinum L. HOM05D002930 ORTHO05D003283 8.3e-218 762.3 1614 35.6
Pp3c9_13300 Physcomitrium patens HOM05D002930 ORTHO05D003283 5.2e-212 743.0 1743 32.9
Actinidia21090 Actinidia chinensis HOM05D002930 ORTHO05D003283 2.4e-209 734.2 1271 40.9
Rhsim01G0277800 Rhododendron simsii HOM05D002930 ORTHO05D003283 2.0e-208 731.1 731 55.4
Gohir.A08G184980 Gossypium hirsutum HOM05D002930 ORTHO05D003283 4.7e-197 693.3 829 49.3
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 1.1e-185 655.6 1624 32.8
Rhsim01G0277700 Rhododendron simsii HOM05D002930 ORTHO05D003283 3.0e-183 647.5 838 47.7
Gohir.A08G184940 Gossypium hirsutum HOM05D002930 ORTHO05D003283 3.5e-160 570.9 604 53.8
HPP92_017201 Vanilla planifolia HOM05D002930 ORTHO05D003283 2.2e-154 551.6 1391 33.0
CDE08G1581 Ceratophyllum demersum HOM05D002930 ORTHO05D003283 6.5e-114 417.2 706 38.8
Aqoxy211s003 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 1.5e-113 416.0 512 49.8
Ah.04g159840 Amaranthus hybridus HOM05D002930 ORTHO05D003283 2.9e-106 391.7 751 37.0
A04p35160 Brassica napus HOM05D002930 ORTHO05D003283 3.8e-106 391.3 349 56.2
CBR_g45306 Chara braunii HOM05D002930 ORTHO05D000002 3.0e-103 381.7 1371 28.4
Actinidia21089 Actinidia chinensis HOM05D002930 ORTHO05D003283 1.0e-82 313.5 269 56.9
Cpa.g.sc9.130 Carica papaya HOM05D002930 ORTHO05D003283 3.9e-74 285.0 333 53.5
QL03p004167 Quercus lobata HOM05D002930 ORTHO05D003283 1.2e-59 236.9 312 51.0
Aqoxy211s002 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 2.6e-54 219.2 168 61.3
Lalb_Chr04g0260851 Lupinus albus HOM05D002930 ORTHO05D003283 4.0e-47 195.3 354 37.9
Aqoxy211s005 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 6.9e-47 194.5 165 55.8
HPP92_017200 Vanilla planifolia HOM05D002930 ORTHO05D003283 4.8e-40 171.8 221 49.3
HPP92_027329 Vanilla planifolia HOM05D002930 ORTHO05D003283 6.2e-40 171.4 241 46.9
Aqoxy211s004 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 6.2e-32 144.8 108 66.7
Aqoxy211s001 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 5.8e-30 138.3 195 46.7
Psat3g168760 Pisum sativum HOM05D002930 ORTHO05D003283 4.6e-27 128.6 186 41.9
VMungo0647G1745 Vigna mungo HOM05D002930 ORTHO05D003283 9.6e-25 120.9 120 51.7
Psat6g102000 Pisum sativum HOM05D002930 ORTHO05D003283 5.1e-10 72.0 81 45.7
Eucgr.H01561 Eucalyptus grandis HOM05D002930 ORTHO05D003283 3.3e-09 69.3 56 58.9
Actinidia24871 Actinidia chinensis HOM05D002930 ORTHO05D003283 5.7e-09 68.6 64 48.4
SHI14294 Sapria himalayana HOM05D005377 ORTHO05D003034 2.6e-06 59.7 76 50.0


User provided reference genes

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