Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI14928 Sapria himalayana HOM05D003879 ORTHO05D003858 6.1e-149 531.2 352 100.0
CAN.G964.6 Capsicum annuum HOM05D003879 ORTHO05D003858 9.2e-28 128.6 98 61.2
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 1.2e-27 128.3 91 63.7
Hma1.2p1_1079F.1_g254860 Hydrangea macrophylla HOM05D003879 ORTHO05D003858 5.9e-27 125.9 90 63.3
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 7.8e-27 125.6 83 67.5
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 2.3e-26 124.0 96 59.4
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 6.6e-26 122.5 74 71.6
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 1.1e-25 121.7 86 64.0
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 1.5e-25 121.3 85 62.4
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 3.3e-25 120.2 99 54.5
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 7.3e-25 119.0 97 53.6
ClCG05G024040 Citrullus lanatus HOM05D003879 ORTHO05D003858 9.5e-25 118.6 86 61.6
ATR0559G110 Amborella trichopoda HOM05D003879 ORTHO05D003858 1.6e-24 117.9 76 68.4
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 1.6e-24 117.9 73 68.5
CSS0010298 Camellia sinensis var. sinensis HOM05D003879 ORTHO05D003858 2.1e-24 117.5 85 64.7
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 2.8e-24 117.1 86 60.5
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 2.8e-24 117.1 69 71.0
DCAR_014653 Daucus carota HOM05D003879 ORTHO05D003858 2.8e-24 117.1 80 58.8
MSTRG.7783 Avicennia marina HOM05D003879 ORTHO05D003858 6.2e-24 115.9 74 64.9
Dinv34127 Davidia involucrata HOM05D003879 ORTHO05D003858 6.2e-24 115.9 83 62.7
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 6.2e-24 115.9 95 52.6
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 6.2e-24 115.9 104 54.8
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 6.2e-24 115.9 83 60.2
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 6.2e-24 115.9 95 54.7
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 1.0e-23 115.2 86 60.5
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.4e-23 114.8 83 61.4
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 1.4e-23 114.8 68 72.1
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 1.4e-23 114.8 101 54.5
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 1.4e-23 114.8 90 56.7
Nitab4.5_0004690g0010 Nicotiana tabacum HOM05D003879 ORTHO05D003858 1.4e-23 114.8 80 62.5
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 1.4e-23 114.8 86 60.5
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 1.8e-23 114.4 79 64.6
Nitab4.5_0013306g0020 Nicotiana tabacum HOM05D003879 ORTHO05D003858 1.8e-23 114.4 70 68.6
TPR.G34072 Trifolium pratense HOM05D003879 ORTHO05D003858 1.8e-23 114.4 94 56.4
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 2.3e-23 114.0 79 62.0
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 2.3e-23 114.0 91 57.1
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 2.3e-23 114.0 91 57.1
Duzib268G0934 Durio zibethinus HOM05D003879 ORTHO05D003858 2.3e-23 114.0 72 61.1
Lalb_Chr09g0329191 Lupinus albus HOM05D003879 ORTHO05D003858 2.3e-23 114.0 93 54.8
Solyc05g013170.2 Solanum lycopersicum HOM05D003879 ORTHO05D003858 3.1e-23 113.6 75 65.3
Ca_08721_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 4.0e-23 113.2 92 56.5
FAN01G2110 Fragaria x ananassa HOM05D003879 ORTHO05D003858 4.0e-23 113.2 74 59.5
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 5.2e-23 112.8 90 58.9
FAN10G1503 Fragaria x ananassa HOM05D003879 ORTHO05D003858 6.8e-23 112.5 96 50.0
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 6.8e-23 112.5 89 55.1
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 8.9e-23 112.1 89 55.1
MD06G1002200 Malus domestica HOM05D003879 ORTHO05D003858 8.9e-23 112.1 96 57.3
MSTRG.2335 Avicennia marina HOM05D003879 ORTHO05D003858 1.2e-22 111.7 92 54.3
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 1.2e-22 111.7 94 53.2
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 1.2e-22 111.7 83 60.2
PGSC0003DMG400028395 Solanum tuberosum HOM05D003879 ORTHO05D003858 1.2e-22 111.7 70 65.7
Thecc.07G109400 Theobroma cacao HOM05D003879 ORTHO05D003858 1.2e-22 111.7 73 61.6
TWI60G0224 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 1.2e-22 111.7 88 58.0
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 1.5e-22 111.3 79 62.0
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 1.5e-22 111.3 86 58.1
Actinidia17746 Actinidia chinensis HOM05D003879 ORTHO05D003858 2.0e-22 110.9 78 61.5
Aqoxy4G02841 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 2.0e-22 110.9 88 56.8
Glyma.20G032800 Glycine max HOM05D003879 ORTHO05D003858 2.0e-22 110.9 92 54.3
Medtr4g082300 Medicago truncatula HOM05D003879 ORTHO05D003858 2.0e-22 110.9 77 61.0
Sopen05g007910 Solanum pennellii HOM05D003879 ORTHO05D003858 2.0e-22 110.9 66 69.7
PSO063G6167 Papaver somniferum HOM05D003879 ORTHO05D003858 2.6e-22 110.5 74 62.2
Psat7g156280 Pisum sativum HOM05D003879 ORTHO05D003858 2.6e-22 110.5 74 60.8
PGSC0003DMG400002853 Solanum tuberosum HOM05D003879 ORTHO05D003858 2.6e-22 110.5 86 59.3
Actinidia31968 Actinidia chinensis HOM05D003879 ORTHO05D003858 3.4e-22 110.2 83 56.6
CDE07G0815 Ceratophyllum demersum HOM05D003879 ORTHO05D003858 3.4e-22 110.2 75 61.3
Dinv16679 Davidia involucrata HOM05D003879 ORTHO05D003858 3.4e-22 110.2 68 67.6
RhsimUnG0183500 Rhododendron simsii HOM05D003879 ORTHO05D003858 3.4e-22 110.2 97 52.6
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 3.4e-22 110.2 96 57.3
Nitab4.5_0000391g0360 Nicotiana tabacum HOM05D003879 ORTHO05D003858 4.4e-22 109.8 74 62.2
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 5.8e-22 109.4 85 55.3
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 7.5e-22 109.0 93 57.0
Lsat_1_v5_gn_4_10781 Lactuca sativa HOM05D003879 ORTHO05D003858 7.5e-22 109.0 74 59.5
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 9.8e-22 108.6 91 56.0
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 1.3e-21 108.2 94 55.3
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 1.3e-21 108.2 84 58.3
Lj4g0023987 Lotus japonicus HOM05D003879 ORTHO05D003858 1.7e-21 107.8 78 60.3
Migut.L01257 Erythranthe guttata HOM05D003879 ORTHO05D003858 2.9e-21 107.1 87 55.2
Sopen04g001620 Solanum pennellii HOM05D003879 ORTHO05D003858 2.9e-21 107.1 86 58.1
unitig_21.g20857 Utricularia gibba HOM05D003879 ORTHO05D003858 2.9e-21 107.1 68 61.8
Rhsim12G0132500 Rhododendron simsii HOM05D003879 ORTHO05D003858 3.7e-21 106.7 87 55.2
Zm00001eb300270 Zea mays HOM05D003879 ORTHO05D003858 3.7e-21 106.7 74 60.8
FvH4_7g07760 Fragaria vesca HOM05D003879 ORTHO05D003858 4.9e-21 106.3 69 59.4
FAN06G4142 Fragaria x ananassa HOM05D003879 ORTHO05D003858 4.9e-21 106.3 69 59.4
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 6.4e-21 105.9 75 61.3
Nitab4.5_0000014g0130 Nicotiana tabacum HOM05D003879 ORTHO05D003858 6.4e-21 105.9 90 55.6
Prupe.5G003300 Prunus persica HOM05D003879 ORTHO05D003858 6.4e-21 105.9 94 53.2
SGA_v2.0_scaffold36G14411 Striga asiatica HOM05D003879 ORTHO05D003858 6.4e-21 105.9 90 55.6
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 8.3e-21 105.5 85 55.3
Os03g0647400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 1.4e-20 104.8 77 57.1
SalBow8G1689 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.4e-20 104.8 96 53.1
SGA_v2.0_scaffold455G51901 Striga asiatica HOM05D003879 ORTHO05D003858 1.4e-20 104.8 108 47.2
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 1.9e-20 104.4 88 53.4
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 1.9e-20 104.4 88 53.4
Phvul.002G169800 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 2.4e-20 104.0 95 51.6
VMungo0251G2410 Vigna mungo HOM05D003879 ORTHO05D003858 2.4e-20 104.0 95 50.5
Aqoxy5G03435 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 3.2e-20 103.6 90 51.1
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 3.2e-20 103.6 92 51.1
ECA234G2637 Erigeron canadensis HOM05D003879 ORTHO05D003858 3.2e-20 103.6 80 56.2
HanXRQChr12g0361951 Helianthus annuus HOM05D003879 ORTHO05D003858 3.2e-20 103.6 89 52.8
Os07g0158400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 3.2e-20 103.6 94 51.1
Manes.01G033400 Manihot esculenta HOM05D003879 ORTHO05D003858 4.1e-20 103.2 80 61.2
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 5.4e-20 102.8 75 60.0
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 5.4e-20 102.8 82 53.7
Solyc04g005580.1 Solanum lycopersicum HOM05D003879 ORTHO05D003858 7.0e-20 102.4 85 55.3
Lsat_1_v5_gn_8_48881 Lactuca sativa HOM05D003879 ORTHO05D003858 9.2e-20 102.1 91 51.6
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 1.2e-19 101.7 88 55.7
Lj4g0017661 Lotus japonicus HOM05D003879 ORTHO05D003858 1.2e-19 101.7 66 65.2
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 1.6e-19 101.3 89 49.4
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 1.6e-19 101.3 74 59.5
Cc11_g12680 Coffea canephora HOM05D003879 ORTHO05D003858 1.6e-19 101.3 66 60.6
HPP92_007611 Vanilla planifolia HOM05D003879 ORTHO05D003858 1.6e-19 101.3 88 53.4
Phvul.005G037600 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 3.5e-19 100.1 88 51.1
Potri.013G099100 Populus trichocarpa HOM05D003879 ORTHO05D003858 4.6e-19 99.8 82 53.7
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 6.0e-19 99.4 88 54.5
BcaC07g41607 Brassica carinata HOM05D003879 ORTHO05D003858 6.0e-19 99.4 100 46.0
BolC8t52157H Brassica oleracea HOM05D003879 ORTHO05D003858 6.0e-19 99.4 100 46.0
Rhsim05G0092100 Rhododendron simsii HOM05D003879 ORTHO05D003858 6.0e-19 99.4 85 52.9
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 6.0e-19 99.4 75 57.3
Potri.019G081400 Populus trichocarpa HOM05D003879 ORTHO05D003858 7.8e-19 99.0 74 62.2
RcHm_v2.0_Chr1g0342011 Rosa chinensis HOM05D003879 ORTHO05D003858 7.8e-19 99.0 69 55.1
Sabra13G0083700 Salix brachista HOM05D003879 ORTHO05D003858 7.8e-19 99.0 83 53.0
Sabra13G0085000 Salix brachista HOM05D003879 ORTHO05D003858 7.8e-19 99.0 83 53.0
COL.COLO4_27987 Corchorus olitorius HOM05D003879 ORTHO05D003858 1.0e-18 98.6 92 48.9
COL.COLO4_17583 Corchorus olitorius HOM05D003879 ORTHO05D003858 1.3e-18 98.2 66 59.1
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 1.3e-18 98.2 90 52.2
Sabra19G0093000 Salix brachista HOM05D003879 ORTHO05D003858 2.3e-18 97.4 74 60.8
ECA233G3198 Erigeron canadensis HOM05D003879 ORTHO05D003858 3.9e-18 96.7 78 53.8
C08p46070 Brassica napus HOM05D003879 ORTHO05D003858 5.0e-18 96.3 94 44.7
AUR62005832 Chenopodium quinoa HOM05D003879 ORTHO05D003858 1.1e-17 95.1 77 55.8
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 1.5e-17 94.7 90 47.8
Potri.013G109100 Populus trichocarpa HOM05D003879 ORTHO05D003858 2.5e-17 94.0 73 57.5
Lj3P1034T75 Lonicera japonica HOM05D003879 ORTHO05D003858 3.3e-17 93.6 66 60.6
BraA09t41615Z Brassica rapa HOM05D003879 ORTHO05D003858 4.3e-17 93.2 89 49.4
Lalb_Chr16g0385721 Lupinus albus HOM05D003879 ORTHO05D003858 5.6e-17 92.8 81 53.1
BcaC07g40413 Brassica carinata HOM05D000331 ORTHO05D003858 7.3e-17 92.4 102 46.1
Ca_08720_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 7.3e-17 92.4 80 52.5
AUR62032825 Chenopodium quinoa HOM05D000508 ORTHO05D000371 1.2e-16 91.7 75 54.7
PSO478G4561 Papaver somniferum HOM05D003879 ORTHO05D003858 1.6e-16 91.3 85 50.6
BcaB08g34362 Brassica carinata HOM05D003879 ORTHO05D003858 3.6e-16 90.1 87 48.3
PSO017G6566 Papaver somniferum HOM05D003879 ORTHO05D003858 3.6e-16 90.1 85 49.4
arahy.Tifrunner.gnm1.ann1.BSX7E4 Arachis hypogaea HOM05D003879 ORTHO05D003858 6.2e-16 89.4 83 51.8
A09p62510 Brassica napus HOM05D003879 ORTHO05D003858 6.2e-16 89.4 84 48.8
Mapoly0084s0083 Marchantia polymorpha HOM05D003879 ORTHO05D003858 1.4e-15 88.2 85 45.9
Zm00001eb218620 Zea mays HOM05D003879 ORTHO05D003858 1.4e-15 88.2 84 50.0
BcaB08g34355 Brassica carinata HOM05D003879 ORTHO05D003858 2.3e-15 87.4 92 45.7
BcaB08g34356 Brassica carinata HOM05D003879 ORTHO05D003858 2.3e-15 87.4 92 45.7
BcaB08g34363 Brassica carinata HOM05D003879 ORTHO05D003858 2.3e-15 87.4 92 45.7
BcaB08g34365 Brassica carinata HOM05D003879 ORTHO05D003858 2.3e-15 87.4 86 47.7
Zm00001eb050330 Zea mays HOM05D003879 ORTHO05D003858 3.1e-15 87.0 93 46.2
Carub.0001s1374 Capsella rubella HOM05D003879 ORTHO05D003858 6.8e-15 85.9 82 47.6
Lj6C784G16 Lonicera japonica HOM05D000508 ORTHO05D006805 7.5e-14 82.4 58 55.2
SalBow1G6087 Salvia bowleyana HOM05D003879 ORTHO05D003858 7.5e-14 82.4 84 48.8
SalBow6G3484 Salvia bowleyana HOM05D003879 ORTHO05D003858 7.5e-14 82.4 84 48.8
SalBow6G4156 Salvia bowleyana HOM05D003879 ORTHO05D003858 7.5e-14 82.4 84 48.8
SalBow8G1644 Salvia bowleyana HOM05D003879 ORTHO05D003858 7.5e-14 82.4 84 48.8
FvH4_5g26420 Fragaria vesca HOM05D003879 ORTHO05D003858 1.3e-13 81.6 74 51.4
FAN13G1900 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.3e-13 81.6 74 51.4
FAN18G4377 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.3e-13 81.6 74 51.4
BraA09t40680Z Brassica rapa HOM05D003879 ORTHO05D003858 6.4e-13 79.3 95 43.2
Pp3c16_17450 Physcomitrium patens HOM05D003879 ORTHO05D003858 6.4e-13 79.3 76 46.1
Mapoly0074s0048 Marchantia polymorpha HOM05D003879 ORTHO05D003858 4.1e-12 76.6 89 42.7
CBR_g26201 Chara braunii HOM05D003879 ORTHO05D003858 1.6e-11 74.7 83 38.6
SMO353G0120 Selaginella moellendorffii HOM05D003879 ORTHO05D003858 6.0e-11 72.8 77 42.9
Cre14.g619950 Chlamydomonas reinhardtii HOM05D003879 ORTHO05D003858 7.8e-11 72.4 71 43.7
MCO14G435 Micromonas commoda HOM05D003879 ORTHO05D003858 1.0e-10 72.0 59 52.5
AL1G25890 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.1e-09 68.6 68 41.2
Carub.0008s1815 Capsella rubella HOM05D003879 ORTHO05D003858 7.3e-09 65.9 83 39.8
AT5G57570 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 1.6e-08 64.7 70 44.3
AT5G57640 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 2.8e-08 63.9 77 41.6
Sp1g12000 Schrenkiella parvula HOM05D011464 ORTHO05D003858 3.6e-08 63.5 78 42.3
AL6G11440 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 4.7e-08 63.2 84 42.9
CARHR014440 Cardamine hirsuta HOM05D003879 ORTHO05D003858 1.1e-07 62.0 61 39.3
RcHm_v2.0_Chr7g0217291 Rosa chinensis HOM05D003879 ORTHO05D003858 4.0e-07 60.1 77 40.3
Carub.0004s2200 Capsella rubella HOM05D003879 ORTHO05D003858 6.8e-07 59.3 75 38.7
BcaB08g36120 Brassica carinata HOM05D015339 ORTHO05D003858 8.9e-07 58.9 74 37.8
AL1G24290 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 1.2e-06 58.5 72 41.7
Carub.0006s0105 Capsella rubella HOM05D003879 ORTHO05D003858 1.5e-06 58.2 61 45.9
SpUn0238_0010 Schrenkiella parvula HOM05D011464 ORTHO05D014025 1.5e-06 58.2 91 38.5
A08p32250 Brassica napus HOM05D015260 ORTHO05D003858 2.0e-06 57.8 67 40.3
BraA08t35148Z Brassica rapa HOM05D015260 ORTHO05D003858 2.0e-06 57.8 67 40.3
BcaC04g19944 Brassica carinata HOM05D015339 ORTHO05D003858 3.4e-06 57.0 71 36.6
C09p49520 Brassica napus HOM05D015339 ORTHO05D003858 3.4e-06 57.0 71 36.6
BolC9t57805H Brassica oleracea HOM05D015339 ORTHO05D003858 3.4e-06 57.0 71 36.6
AL1G25910 Arabidopsis lyrata HOM05D011464 ORTHO05D003858 4.4e-06 56.6 50 50.0
C08p19630 Brassica napus HOM05D015260 ORTHO05D003858 5.8e-06 56.2 67 37.3
C08p16700 Brassica napus HOM05D015260 ORTHO05D003858 7.6e-06 55.8 67 40.3


User provided reference genes

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