Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI14304 Sapria himalayana HOM05D003028 ORTHO05D003465 8.0e-97 357.1 177 100.0
Potri.003G084400 Populus trichocarpa HOM05D003028 ORTHO05D003465 5.1e-27 125.2 136 50.7
Sabra03G0054900 Salix brachista HOM05D003028 ORTHO05D003465 1.1e-26 124.0 142 50.0
Manes.14G126400 Manihot esculenta HOM05D003028 ORTHO05D003465 1.9e-26 123.2 141 45.4
Thecc.01G159100 Theobroma cacao HOM05D003028 ORTHO05D003465 4.3e-26 122.1 135 47.4
Prupe.7G036400 Prunus persica HOM05D003028 ORTHO05D003465 5.6e-26 121.7 140 52.9
Gohir.A07G063400 Gossypium hirsutum HOM05D003028 ORTHO05D003465 9.6e-26 120.9 142 44.4
Gorai.001G071600 Gossypium raimondii HOM05D003028 ORTHO05D003465 9.6e-26 120.9 142 45.1
Gohir.D07G068100 Gossypium hirsutum HOM05D003028 ORTHO05D003465 1.6e-25 120.2 144 45.8
Actinidia02201 Actinidia chinensis HOM05D003028 ORTHO05D003465 3.7e-25 119.0 133 49.6
TAR636G0001 Trochodendron aralioides HOM05D003028 ORTHO05D003465 6.2e-25 118.2 131 49.6
CiPaw.12G056100 Carya illinoinensis HOM05D003028 ORTHO05D003465 8.1e-25 117.9 136 43.4
QL08p008350 Quercus lobata HOM05D003028 ORTHO05D003465 8.1e-25 117.9 140 46.4
Aqoxy7G02099 Aquilegia oxysepala HOM05D003028 ORTHO05D003465 1.4e-24 117.1 139 47.5
Dinv25144 Davidia involucrata HOM05D003028 ORTHO05D003465 3.1e-24 115.9 139 46.0
Duzib264G0873 Durio zibethinus HOM05D003028 ORTHO05D003465 4.0e-24 115.5 160 41.2
Cpa.g.sc19.20 Carica papaya HOM05D003028 ORTHO05D003465 6.9e-24 114.8 127 49.6
Dinv25147 Davidia involucrata HOM05D003028 ORTHO05D003465 6.9e-24 114.8 139 47.5
Hma1.2p1_0840F.1_g226740 Hydrangea macrophylla HOM05D003028 ORTHO05D003465 9.0e-24 114.4 133 47.4
Sc12g0005140 Simmondsia chinensis HOM05D003028 ORTHO05D003465 9.0e-24 114.4 136 47.8
Ca_22023_v3 Cicer arietinum L. HOM05D003028 ORTHO05D003465 1.5e-23 113.6 133 44.4
PGR031G1072 Punica granatum HOM05D003028 ORTHO05D003465 1.5e-23 113.6 140 42.9
Hma1.2p1_2748F.1_g327800 Hydrangea macrophylla HOM05D003028 ORTHO05D003465 2.0e-23 113.2 133 47.4
MD14G1090100 Malus domestica HOM05D003028 ORTHO05D003465 2.0e-23 113.2 141 48.2
RcHm_v2.0_Chr7g0206021 Rosa chinensis HOM05D003028 ORTHO05D003465 1.7e-22 110.2 141 46.1
TWI34G1562 Tripterygium wilfordii HOM05D003028 ORTHO05D003465 2.9e-22 109.4 133 47.4
Ciclev10011185m.g Citrus clementina HOM05D003028 ORTHO05D003465 3.8e-22 109.0 141 43.3
FvH4_5g20640 Fragaria vesca HOM05D003028 ORTHO05D003465 3.8e-22 109.0 162 43.8
FAN08G0752 Fragaria x ananassa HOM05D003028 ORTHO05D003465 4.9e-22 108.6 162 42.0
CSS0008749 Camellia sinensis var. sinensis HOM05D003028 ORTHO05D003465 8.4e-22 107.8 133 44.4
FAN04G1755 Fragaria x ananassa HOM05D003028 ORTHO05D003465 8.4e-22 107.8 162 43.8
Phvul.011G179900 Phaseolus vulgaris HOM05D003028 ORTHO05D003465 8.4e-22 107.8 132 41.7
Eucgr.D02137 Eucalyptus grandis HOM05D003028 ORTHO05D003465 1.1e-21 107.5 147 43.5
Ah.12g053910 Amaranthus hybridus HOM05D003028 ORTHO05D003465 1.4e-21 107.1 135 43.7
CANSAT11G2314 Cannabis sativa HOM05D003028 ORTHO05D003465 1.4e-21 107.1 157 41.4
CDE03G0495 Ceratophyllum demersum HOM05D003028 ORTHO05D003465 1.4e-21 107.1 134 43.3
COL.COLO4_33709 Corchorus olitorius HOM05D003028 ORTHO05D003465 1.4e-21 107.1 135 43.0
FAN13G3235 Fragaria x ananassa HOM05D003028 ORTHO05D003465 2.5e-21 106.3 160 43.8
vmacro00390 Vaccinium macrocarpon HOM05D003028 ORTHO05D003465 2.5e-21 106.3 133 42.9
Rhsim03G0030600 Rhododendron simsii HOM05D003028 ORTHO05D003465 3.2e-21 105.9 130 43.8
AUR62018818 Chenopodium quinoa HOM05D003028 ORTHO05D003465 4.2e-21 105.5 132 44.7
FAN18G3943 Fragaria x ananassa HOM05D003028 ORTHO05D003465 4.2e-21 105.5 162 43.2
Psat4g074480 Pisum sativum HOM05D003028 ORTHO05D003465 5.5e-21 105.1 132 41.7
ATR0665G032 Amborella trichopoda HOM05D003028 ORTHO05D003465 7.1e-21 104.8 143 44.8
AUR62007185 Chenopodium quinoa HOM05D003028 ORTHO05D003465 7.1e-21 104.8 132 44.7
Rhsim03G0030000 Rhododendron simsii HOM05D003028 ORTHO05D003465 7.1e-21 104.8 133 42.9
Glyma.17G149100 Glycine max HOM05D003028 ORTHO05D003465 9.3e-21 104.4 130 42.3
Atru.chr9.1176 Acer truncatum HOM05D003028 ORTHO05D003465 1.2e-20 104.0 126 44.4
TPR.G25764 Trifolium pratense HOM05D003028 ORTHO05D003465 1.6e-20 103.6 132 42.4
Oeu028560.1 Olea europaea HOM05D003028 ORTHO05D003465 2.1e-20 103.2 136 44.1
Lj4g0020525 Lotus japonicus HOM05D003028 ORTHO05D003465 3.5e-20 102.4 126 43.7
Cc08_g11180 Coffea canephora HOM05D003028 ORTHO05D003465 6.0e-20 101.7 140 42.1
CSS0003062 Camellia sinensis var. sinensis HOM05D003028 ORTHO05D003465 7.9e-20 101.3 133 41.4
arahy.Tifrunner.gnm1.ann1.E9F7LA Arachis hypogaea HOM05D003028 ORTHO05D003465 1.3e-19 100.5 123 44.7
Prupe.2G056400 Prunus persica HOM05D003028 ORTHO05D003465 1.8e-19 100.1 123 50.4
arahy.Tifrunner.gnm1.ann1.8KVL3I Arachis hypogaea HOM05D003028 ORTHO05D003465 3.9e-19 99.0 122 44.3
EL10Ac5g12245 Beta vulgaris HOM05D003028 ORTHO05D003465 3.9e-19 99.0 151 43.0
Medtr4g099200 Medicago truncatula HOM05D003028 ORTHO05D003465 3.9e-19 99.0 133 40.6
ECA240G2633 Erigeron canadensis HOM05D003028 ORTHO05D003465 6.7e-19 98.2 121 42.1
Lalb_Chr16g0386391 Lupinus albus HOM05D003028 ORTHO05D003465 6.7e-19 98.2 132 41.7
MSTRG.14033 Avicennia marina HOM05D003028 ORTHO05D003465 8.7e-19 97.8 140 40.0
arahy.Tifrunner.gnm1.ann1.J5CKXS Arachis hypogaea HOM05D003028 ORTHO05D003465 1.1e-18 97.4 122 44.3
Lj7P106T16 Lonicera japonica HOM05D003028 ORTHO05D003465 1.1e-18 97.4 113 45.1
CSS0011247 Camellia sinensis var. sinensis HOM05D003028 ORTHO05D003465 1.9e-18 96.7 133 42.9
HanXRQChr03g0091541 Helianthus annuus HOM05D003028 ORTHO05D003465 1.9e-18 96.7 131 41.2
HPP92_014880 Vanilla planifolia HOM05D003028 ORTHO05D003465 4.3e-18 95.5 128 39.8
BcaNung03453 Brassica carinata HOM05D003028 ORTHO05D003465 7.4e-18 94.7 78 56.4
Sp7g16530 Schrenkiella parvula HOM05D003028 ORTHO05D003465 7.4e-18 94.7 78 56.4
Nitab4.5_0000433g0030 Nicotiana tabacum HOM05D003028 ORTHO05D003465 9.6e-18 94.4 138 41.3
Nitab4.5_0001000g0120 Nicotiana tabacum HOM05D003028 ORTHO05D003465 9.6e-18 94.4 137 41.6
Thhalv10024595m.g Eutrema salsugineum HOM05D003028 ORTHO05D003465 1.3e-17 94.0 78 56.4
arahy.Tifrunner.gnm1.ann1.MM1MHA Arachis hypogaea HOM05D003028 ORTHO05D003465 1.6e-17 93.6 91 50.5
VMungo1127G0894 Vigna mungo HOM05D003028 ORTHO05D003465 1.6e-17 93.6 131 38.9
CAN.G564.17 Capsicum annuum HOM05D003028 ORTHO05D003465 2.1e-17 93.2 94 50.0
ClCG09G012540 Citrullus lanatus HOM05D003028 ORTHO05D003465 4.8e-17 92.0 136 39.0
Migut.E01542 Erythranthe guttata HOM05D003028 ORTHO05D003465 4.8e-17 92.0 125 44.0
PGSC0003DMG400031153 Solanum tuberosum HOM05D003028 ORTHO05D003465 4.8e-17 92.0 137 40.9
Sed0019599 Sechium edule HOM05D003028 ORTHO05D003465 8.2e-17 91.3 128 36.7
THA.LOC104798350 Tarenaya hassleriana HOM05D003028 ORTHO05D003465 1.4e-16 90.5 85 49.4
AT4G17616 Arabidopsis thaliana HOM05D003028 ORTHO05D003465 1.8e-16 90.1 72 56.9
CARHR224340 Cardamine hirsuta HOM05D003028 ORTHO05D003465 1.8e-16 90.1 78 53.8
Peaxi162Scf00226g00318 Petunia axillaris HOM05D003028 ORTHO05D003465 1.8e-16 90.1 138 37.0
DCAR_010235 Daucus carota HOM05D003028 ORTHO05D003465 3.1e-16 89.4 138 42.8
SGA_v2.0_scaffold169G38670 Striga asiatica HOM05D003028 ORTHO05D003465 4.1e-16 89.0 129 38.8
Aa31LG6G370 Aethionema arabicum HOM05D003028 ORTHO05D003465 5.3e-16 88.6 90 47.8
A03p50560 Brassica napus HOM05D003028 ORTHO05D003465 5.3e-16 88.6 107 43.9
BraA03t14146Z Brassica rapa HOM05D003028 ORTHO05D003465 5.3e-16 88.6 107 43.9
Solyc04g072150.3 Solanum lycopersicum HOM05D003028 ORTHO05D003465 6.9e-16 88.2 141 36.9
Sopen04g028320 Solanum pennellii HOM05D003028 ORTHO05D003465 6.9e-16 88.2 93 47.3
BcaC06g33555 Brassica carinata HOM05D003028 ORTHO05D003465 1.5e-15 87.0 79 50.6
CsaV3_3G049690 Cucumis sativus L. HOM05D003028 ORTHO05D003465 1.5e-15 87.0 132 37.9
SalBow1G5264 Salvia bowleyana HOM05D003028 ORTHO05D003465 1.5e-15 87.0 71 56.3
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 1.0e-14 84.3 132 38.6
C07p48880 Brassica napus HOM05D003028 ORTHO05D003465 2.2e-14 83.2 79 49.4
BolC7t45396H Brassica oleracea HOM05D003028 ORTHO05D003465 2.2e-14 83.2 79 49.4
SEGI_26685 Sequoiadendron giganteum HOM05D003028 ORTHO05D003465 2.2e-14 83.2 83 48.2
unitig_52.g17059 Utricularia gibba HOM05D003028 ORTHO05D003465 5.5e-13 78.6 94 42.6
arahy.Tifrunner.gnm1.ann1.U6JNIR Arachis hypogaea HOM05D003028 ORTHO05D003465 7.2e-13 78.2 88 45.5
Zm00001eb432440 Zea mays HOM05D003028 ORTHO05D003465 1.2e-12 77.4 84 42.9
Nn1g00737 Nelumbo nucifera HOM05D003028 ORTHO05D003465 2.3e-11 73.2 106 41.5
Sabra05G0162300 Salix brachista HOM05D003028 ORTHO05D003465 3.1e-08 62.8 93 31.2
MBI11_g32996_MAGBIO Magnolia biondii HOM05D003028 ORTHO05D003465 1.5e-07 60.5 87 35.6
ATR0665G053 Amborella trichopoda HOM05D003028 ORTHO05D003465 2.0e-07 60.1 80 36.2
RcHm_v2.0_Chr7g0206131 Rosa chinensis HOM05D003028 ORTHO05D003465 3.4e-07 59.3 48 58.3
MSTRG.753 Avicennia marina HOM05D005706 ORTHO05D007474 5.9e-07 58.5 169 26.0
Prupe.8G237400 Prunus persica HOM05D003028 ORTHO05D003465 1.0e-06 57.8 86 31.4
SalBow2G2647 Salvia bowleyana HOM05D005706 ORTHO05D007474 1.3e-06 57.4 169 25.4
unitig_37.g12085 Utricularia gibba HOM05D003028 ORTHO05D003465 1.3e-06 57.4 86 33.7
Actinidia16166 Actinidia chinensis HOM05D005706 ORTHO05D007474 1.7e-06 57.0 82 31.7
Aqoxy2G03432 Aquilegia oxysepala HOM05D003028 ORTHO05D003465 1.7e-06 57.0 93 30.1
CiPaw.05G125300 Carya illinoinensis HOM05D005706 ORTHO05D007474 1.7e-06 57.0 82 31.7
Actinidia14951 Actinidia chinensis HOM05D003028 ORTHO05D003465 3.8e-06 55.8 93 30.1
ATR0580G357 Amborella trichopoda HOM05D003028 ORTHO05D003465 3.8e-06 55.8 80 36.2
ECA233G5550 Erigeron canadensis HOM05D005706 ORTHO05D007474 3.8e-06 55.8 82 30.5
CDE06G1870 Ceratophyllum demersum HOM05D003028 ORTHO05D003465 5.0e-06 55.5 93 30.1
unitig_578.g16579 Utricularia gibba HOM05D005706 ORTHO05D007474 5.0e-06 55.5 68 33.8
HanXRQChr08g0211761 Helianthus annuus HOM05D005706 ORTHO05D007474 8.5e-06 54.7 63 33.3


User provided reference genes

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