Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI14119 Sapria himalayana HOM05D003980 ORTHO05D005301 1.5e-89 332.8 164 100.0
Actinidia18313 Actinidia chinensis HOM05D003980 ORTHO05D005301 1.3e-16 90.5 66 69.7
Lj9A485G82 Lonicera japonica HOM05D003980 ORTHO05D005301 6.4e-16 88.2 78 57.7
ECA232G4466 Erigeron canadensis HOM05D003980 ORTHO05D005301 8.4e-16 87.8 78 57.7
Manes.06G125700 Manihot esculenta HOM05D003980 ORTHO05D005301 1.1e-15 87.4 66 66.7
Rhsim08G0195900 Rhododendron simsii HOM05D003980 ORTHO05D005301 1.9e-15 86.7 65 67.7
vmacro19166 Vaccinium macrocarpon HOM05D003980 ORTHO05D005301 3.2e-15 85.9 62 69.4
COL.COLO4_37237 Corchorus olitorius HOM05D003980 ORTHO05D005301 4.2e-15 85.5 73 60.3
CSS0008437 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 5.4e-15 85.1 61 70.5
Lj5A88T63 Lonicera japonica HOM05D003980 ORTHO05D005301 7.1e-15 84.7 75 57.3
TWI39G0366 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 7.1e-15 84.7 78 56.4
GSVIVG01008633001 Vitis vinifera HOM05D003980 ORTHO05D005301 1.6e-14 83.6 78 53.8
Atru.chr6.1901 Acer truncatum HOM05D003980 ORTHO05D005301 2.1e-14 83.2 78 56.4
FAN08G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 2.7e-14 82.8 141 38.3
HanXRQChr09g0273931 Helianthus annuus HOM05D003980 ORTHO05D005301 2.7e-14 82.8 78 56.4
SGA_v2.0_scaffold143G35744 Striga asiatica HOM05D003980 ORTHO05D005301 2.7e-14 82.8 75 57.3
Glyma.05G201200 Glycine max HOM05D003980 ORTHO05D005301 4.6e-14 82.0 74 62.2
Lsat_1_v5_gn_4_84700 Lactuca sativa HOM05D003980 ORTHO05D005301 4.6e-14 82.0 70 61.4
Nitab4.5_0000663g0190 Nicotiana tabacum HOM05D003980 ORTHO05D005301 4.6e-14 82.0 88 50.0
FAN18G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 6.0e-14 81.6 82 51.2
MSTRG.11233 Avicennia marina HOM05D003980 ORTHO05D005301 7.8e-14 81.3 78 53.8
CSS0000982 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 7.8e-14 81.3 68 58.8
FAN04G0599 Fragaria x ananassa HOM05D003980 ORTHO05D005301 7.8e-14 81.3 82 51.2
Lalb_Chr23g0272921 Lupinus albus HOM05D003980 ORTHO05D005301 7.8e-14 81.3 91 50.5
QL10p000901 Quercus lobata HOM05D003980 ORTHO05D005301 7.8e-14 81.3 62 64.5
Ciclev10030650m.g Citrus clementina HOM05D003980 ORTHO05D005301 1.3e-13 80.5 75 54.7
Dinv13736 Davidia involucrata HOM05D003980 ORTHO05D005301 1.3e-13 80.5 78 52.6
Thecc.03G138500 Theobroma cacao HOM05D003980 ORTHO05D005301 1.3e-13 80.5 62 62.9
Cfa018720 Carpinus fangiana HOM05D003980 ORTHO05D005301 1.7e-13 80.1 80 55.0
TWI14G0519 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 1.7e-13 80.1 78 52.6
Nitab4.5_0002450g0020 Nicotiana tabacum HOM05D003980 ORTHO05D005301 2.3e-13 79.7 78 52.6
Cc04_g05920 Coffea canephora HOM05D003980 ORTHO05D005301 3.0e-13 79.3 66 63.6
Potri.012G105800 Populus trichocarpa HOM05D003980 ORTHO05D005301 3.0e-13 79.3 62 64.5
Hund02497 Selenicereus undatus HOM05D003980 ORTHO05D005301 3.0e-13 79.3 78 53.8
Duzib205G0834 Durio zibethinus HOM05D003980 ORTHO05D005301 3.9e-13 79.0 75 54.7
FAN13G1995 Fragaria x ananassa HOM05D003980 ORTHO05D005301 3.9e-13 79.0 82 50.0
Glyma.08G008600 Glycine max HOM05D003980 ORTHO05D005301 3.9e-13 79.0 63 65.1
CiPaw.11G001400 Carya illinoinensis HOM05D003980 ORTHO05D005301 5.1e-13 78.6 62 64.5
FvH4_5g09220 Fragaria vesca HOM05D003980 ORTHO05D005301 5.1e-13 78.6 75 53.3
HanXRQChr16g0498871 Helianthus annuus HOM05D003980 ORTHO05D005301 5.1e-13 78.6 70 55.7
TAR371G0735 Trochodendron aralioides HOM05D003980 ORTHO05D005301 5.1e-13 78.6 61 63.9
Medtr3g498735 Medicago truncatula HOM05D003980 ORTHO05D005301 6.6e-13 78.2 78 55.1
Sc04g0000260 Simmondsia chinensis HOM05D003980 ORTHO05D005301 8.7e-13 77.8 75 52.0
Haze_07113 Corylus avellana HOM05D003980 ORTHO05D005301 1.1e-12 77.4 80 53.8
Gohir.A09G248100 Gossypium hirsutum HOM05D003980 ORTHO05D005301 1.1e-12 77.4 73 56.2
Gohir.D09G248900 Gossypium hirsutum HOM05D003980 ORTHO05D005301 1.1e-12 77.4 73 56.2
Gorai.006G273300 Gossypium raimondii HOM05D003980 ORTHO05D005301 1.1e-12 77.4 73 56.2
Peaxi162Scf00314g00535 Petunia axillaris HOM05D003980 ORTHO05D005301 1.1e-12 77.4 78 50.0
AUR62034771 Chenopodium quinoa HOM05D003980 ORTHO05D005301 1.5e-12 77.0 62 61.3
Migut.I00610 Erythranthe guttata HOM05D003980 ORTHO05D005301 1.5e-12 77.0 62 59.7
SalBow7G4845 Salvia bowleyana HOM05D003980 ORTHO05D005301 1.5e-12 77.0 78 51.3
VMungo1309G0598 Vigna mungo HOM05D003980 ORTHO05D005301 1.5e-12 77.0 64 59.4
AUR62009517 Chenopodium quinoa HOM05D003980 ORTHO05D005301 1.9e-12 76.6 62 61.3
Ca_17584_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 1.9e-12 76.6 56 69.6
Eucgr.B00073 Eucalyptus grandis HOM05D003980 ORTHO05D005301 1.9e-12 76.6 73 56.2
Medtr8g100000 Medicago truncatula HOM05D003980 ORTHO05D005301 1.9e-12 76.6 63 61.9
Phvul.002G282600 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 1.9e-12 76.6 56 69.6
Sabra12G0078100 Salix brachista HOM05D003980 ORTHO05D005301 1.9e-12 76.6 62 62.9
Lj1g0007025 Lotus japonicus HOM05D003980 ORTHO05D005301 2.5e-12 76.3 64 60.9
Phvul.009G164700 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 2.5e-12 76.3 75 54.7
Prupe.5G143400 Prunus persica HOM05D003980 ORTHO05D005301 2.5e-12 76.3 78 51.3
EL10Ac5g11306 Beta vulgaris HOM05D003980 ORTHO05D005301 3.3e-12 75.9 69 56.5
DCAR_025658 Daucus carota HOM05D003980 ORTHO05D005301 3.3e-12 75.9 60 63.3
Lj4g0027174 Lotus japonicus HOM05D003980 ORTHO05D005301 3.3e-12 75.9 74 58.1
Nn3g16303 Nelumbo nucifera HOM05D003980 ORTHO05D005301 3.3e-12 75.9 62 59.7
TPR.G21586 Trifolium pratense HOM05D003980 ORTHO05D005301 3.3e-12 75.9 56 64.3
unitig_22.g6271 Utricularia gibba HOM05D003980 ORTHO05D005301 3.3e-12 75.9 62 58.1
ATR0693G246 Amborella trichopoda HOM05D003980 ORTHO05D005301 4.3e-12 75.5 62 59.7
PGR083G0225 Punica granatum HOM05D003980 ORTHO05D005301 4.3e-12 75.5 62 61.3
Aqoxy5G03175 Aquilegia oxysepala HOM05D003980 ORTHO05D005301 5.6e-12 75.1 78 50.0
Duzib084G0479 Durio zibethinus HOM05D003980 ORTHO05D005301 5.6e-12 75.1 73 53.4
Glyma.04G200300 Glycine max HOM05D003980 ORTHO05D005301 7.3e-12 74.7 64 56.2
Sopen03g037250 Solanum pennellii HOM05D003980 ORTHO05D005301 7.3e-12 74.7 78 48.7
PGSC0003DMG401014249 Solanum tuberosum HOM05D003980 ORTHO05D005301 7.3e-12 74.7 78 48.7
TPR.G12812 Trifolium pratense HOM05D003980 ORTHO05D005301 7.3e-12 74.7 55 69.1
VMungo0251G0815 Vigna mungo HOM05D003980 ORTHO05D005301 7.3e-12 74.7 61 63.9
MBI19_g26308_MAGBIO Magnolia biondii HOM05D003980 ORTHO05D005301 9.6e-12 74.3 58 63.8
Potri.015G105000 Populus trichocarpa HOM05D003980 ORTHO05D005301 9.6e-12 74.3 75 52.0
CANSAT56G3290 Cannabis sativa HOM05D003980 ORTHO05D005301 1.2e-11 73.9 61 59.0
Lalb_Chr13g0297021 Lupinus albus HOM05D003980 ORTHO05D005301 1.2e-11 73.9 56 66.1
Solyc03g118350.4 Solanum lycopersicum HOM05D003980 ORTHO05D005301 1.2e-11 73.9 62 58.1
Ah.02g114660 Amaranthus hybridus HOM05D003980 ORTHO05D005301 1.6e-11 73.6 78 48.7
MD14G1148800 Malus domestica HOM05D003980 ORTHO05D005301 1.6e-11 73.6 68 54.4
PSO591G0475 Papaver somniferum HOM05D003980 ORTHO05D005301 1.6e-11 73.6 60 61.7
PSO832G3889 Papaver somniferum HOM05D003980 ORTHO05D005301 1.6e-11 73.6 60 61.7
A06p34620 Brassica napus HOM05D003980 ORTHO05D005301 2.1e-11 73.2 62 54.8
BraA06t26390Z Brassica rapa HOM05D003980 ORTHO05D005301 2.8e-11 72.8 62 54.8
arahy.Tifrunner.gnm1.ann1.JJXJ29 Arachis hypogaea HOM05D003980 ORTHO05D005301 3.6e-11 72.4 56 64.3
arahy.Tifrunner.gnm1.ann1.US1BEE Arachis hypogaea HOM05D003980 ORTHO05D005301 3.6e-11 72.4 56 64.3
Nn4g22168 Nelumbo nucifera HOM05D003980 ORTHO05D005301 3.6e-11 72.4 56 62.5
arahy.Tifrunner.gnm1.ann1.1NY8SK Arachis hypogaea HOM05D003980 ORTHO05D005301 4.7e-11 72.0 75 50.7
CDE01G0794 Ceratophyllum demersum HOM05D003980 ORTHO05D005301 4.7e-11 72.0 74 50.0
RcHm_v2.0_Chr7g0188941 Rosa chinensis HOM05D003980 ORTHO05D005301 4.7e-11 72.0 75 50.7
Aa31LG11G3070 Aethionema arabicum HOM05D003980 ORTHO05D005301 6.2e-11 71.6 62 54.8
Carub.0006s2147 Capsella rubella HOM05D003980 ORTHO05D005301 6.2e-11 71.6 62 53.2
Lalb_Chr12g0202411 Lupinus albus HOM05D003980 ORTHO05D005301 6.2e-11 71.6 63 58.7
C07p43870 Brassica napus HOM05D003980 ORTHO05D005301 8.1e-11 71.2 62 54.8
MD06G1132400 Malus domestica HOM05D003980 ORTHO05D005301 8.1e-11 71.2 62 58.1
Ca_14153_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 1.1e-10 70.9 56 60.7
Psat5g054520 Pisum sativum HOM05D003980 ORTHO05D005301 1.1e-10 70.9 56 57.1
HPP92_006911 Vanilla planifolia HOM05D003980 ORTHO05D005301 1.1e-10 70.9 61 54.1
AT5G23720 Arabidopsis thaliana HOM05D003980 ORTHO05D005301 1.4e-10 70.5 62 53.2
CARHR189830 Cardamine hirsuta HOM05D003980 ORTHO05D005301 1.4e-10 70.5 62 53.2
ClCG06G018320 Citrullus lanatus HOM05D003980 ORTHO05D005301 1.4e-10 70.5 70 52.9
Hund10056 Selenicereus undatus HOM05D003980 ORTHO05D005301 1.4e-10 70.5 82 47.6
Ca_10885_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 1.8e-10 70.1 71 56.3
Thhalv10003616m.g Eutrema salsugineum HOM05D003980 ORTHO05D005301 1.8e-10 70.1 62 53.2
Zm00001eb130450 Zea mays HOM05D003980 ORTHO05D005301 1.8e-10 70.1 56 60.7
BcaNung01844 Brassica carinata HOM05D003980 ORTHO05D005301 2.4e-10 69.7 62 53.2
BolC7t44915H Brassica oleracea HOM05D003980 ORTHO05D005301 2.4e-10 69.7 62 53.2
MELO3C026163.2 Cucumis melo HOM05D003980 ORTHO05D005301 2.4e-10 69.7 60 56.7
CsaV3_1G000110 Cucumis sativus L. HOM05D003980 ORTHO05D005301 2.4e-10 69.7 60 56.7
DCAR_021407 Daucus carota HOM05D003980 ORTHO05D005301 3.1e-10 69.3 75 48.0
AL6G34990 Arabidopsis lyrata HOM05D003980 ORTHO05D005301 4.0e-10 68.9 62 51.6
Os01g0311500 Oryza sativa ssp. japonica HOM05D003980 ORTHO05D005301 5.2e-10 68.6 68 54.4
Psat5g054480 Pisum sativum HOM05D003980 ORTHO05D005301 9.0e-10 67.8 57 56.1
Sp2g23510 Schrenkiella parvula HOM05D003980 ORTHO05D005301 9.0e-10 67.8 62 51.6
THA.LOC104821537 Tarenaya hassleriana HOM05D003980 ORTHO05D005301 9.0e-10 67.8 62 53.2
Ca_16085_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 4.4e-09 65.5 57 61.4
SEGI_36335 Sequoiadendron giganteum HOM05D003980 ORTHO05D005301 7.6e-09 64.7 61 50.8
Sabra15G0125200 Salix brachista HOM05D003980 ORTHO05D005301 1.7e-08 63.5 50 64.0
Dinv23210 Davidia involucrata HOM05D003980 ORTHO05D005301 2.2e-08 63.2 44 68.2


User provided reference genes

Program Settings