Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 1.2e-247 859.4 424 100.0
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 4.0e-155 552.0 425 68.7
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 6.9e-155 551.2 424 68.9
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 1.5e-154 550.1 424 68.6
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 1.6e-148 530.0 436 64.2
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 1.1e-147 527.3 437 65.7
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 4.5e-146 521.9 428 65.4
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 6.5e-145 518.1 438 63.2
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 5.5e-144 515.0 432 64.1
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 9.4e-144 514.2 423 65.0
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 5.1e-142 508.4 443 63.2
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 5.7e-141 505.0 434 62.2
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 6.3e-140 501.5 440 62.3
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 1.8e-139 500.0 441 61.7
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 3.1e-139 499.2 419 63.2
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 6.9e-139 498.0 432 63.7
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 9.1e-139 497.7 441 61.7
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 3.4e-138 495.7 423 62.9
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 3.8e-137 492.3 437 60.2
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 2.7e-135 486.1 447 59.1
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 3.6e-135 485.7 441 60.1
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 6.1e-135 485.0 457 58.6
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 6.1e-135 485.0 424 61.6
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 7.9e-135 484.6 442 59.5
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 3.0e-134 482.6 438 61.0
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 5.1e-134 481.9 431 61.3
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 6.7e-134 481.5 435 59.8
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 8.8e-134 481.1 447 59.3
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 1.1e-133 480.7 450 60.2
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 2.6e-133 479.6 414 61.6
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 3.3e-133 479.2 445 60.7
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 4.4e-133 478.8 425 61.2
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 9.7e-133 477.6 445 59.3
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 1.4e-131 473.8 408 61.5
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 1.8e-131 473.4 452 58.6
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 9.1e-131 471.1 424 60.6
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 1.2e-130 470.7 447 57.3
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 7.7e-130 468.0 428 59.1
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 1.0e-129 467.6 451 57.9
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 5.0e-129 465.3 455 58.0
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 5.0e-129 465.3 450 57.6
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 1.1e-128 464.2 427 58.1
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 1.1e-128 464.2 447 58.6
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 2.5e-128 463.0 457 56.9
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 2.5e-128 463.0 427 57.8
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 4.2e-128 462.2 444 58.8
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 7.2e-128 461.5 432 59.3
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 7.2e-128 461.5 450 56.9
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 2.7e-127 459.5 427 60.4
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 2.7e-127 459.5 440 58.0
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 1.4e-126 457.2 425 58.8
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 1.4e-126 457.2 447 57.3
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 8.8e-126 454.5 450 58.0
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 1.4e-123 447.2 422 59.2
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 1.7e-121 440.3 448 56.7
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 9.4e-120 434.5 455 54.3
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 1.6e-119 433.7 447 54.6
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.7e-119 433.0 455 53.2
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 4.7e-119 432.2 446 55.2
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 6.1e-119 431.8 408 60.0
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 6.1e-119 431.8 447 56.2
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 1.0e-118 431.0 403 58.8
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 3.0e-118 429.5 448 54.9
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 6.7e-118 428.3 430 56.3
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 4.4e-117 425.6 451 53.4
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 7.5e-117 424.9 431 56.1
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 7.5e-117 424.9 392 59.2
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 9.7e-117 424.5 416 56.7
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.3e-116 424.1 460 52.0
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.3e-116 424.1 458 52.2
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 2.2e-116 423.3 453 54.5
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 2.2e-116 423.3 465 54.0
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 8.2e-116 421.4 449 53.5
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 1.8e-115 420.2 403 58.8
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 2.4e-115 419.9 447 54.1
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 2.4e-115 419.9 447 54.1
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 4.1e-115 419.1 437 55.4
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 5.3e-115 418.7 424 55.2
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 2.0e-114 416.8 371 62.3
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 4.5e-114 415.6 453 53.0
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 4.5e-114 415.6 453 53.0
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 1.0e-113 414.5 437 53.5
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 2.5e-112 409.8 442 53.4
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 4.2e-112 409.1 386 57.8
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 4.2e-112 409.1 354 61.3
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 5.5e-112 408.7 449 53.2
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 1.2e-111 407.5 447 52.6
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 6.1e-111 405.2 442 53.2
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 8.0e-111 404.8 438 52.7
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 8.0e-111 404.8 438 52.5
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 8.0e-111 404.8 438 52.7
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 1.0e-110 404.4 445 52.4
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 8.8e-110 401.4 384 57.8
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 4.4e-109 399.1 442 52.3
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 4.4e-109 399.1 442 52.0
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 4.8e-108 395.6 336 62.2
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 2.4e-107 393.3 439 51.7
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 9.1e-107 391.3 382 57.6
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 2.7e-106 389.8 451 51.4
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 5.9e-106 388.7 374 58.8
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 1.7e-105 387.1 503 48.3
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 1.9e-104 383.6 387 55.6
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 2.8e-103 379.8 409 54.0
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 3.6e-103 379.4 408 52.7
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 6.1e-103 378.6 447 50.1
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 8.0e-103 378.3 413 52.1
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 4.0e-102 375.9 437 49.9
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 5.2e-102 375.6 438 50.2
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 8.9e-102 374.8 437 50.3
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 9.8e-101 371.3 452 48.7
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 6.3e-100 368.6 440 49.1
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.8e-99 367.1 437 49.4
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 2.4e-99 366.7 437 47.1
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 5.4e-99 365.5 393 53.2
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 5.0e-97 359.0 439 49.9
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 1.9e-88 330.5 392 49.5
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 3.3e-88 329.7 468 44.9
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 1.6e-87 327.4 373 52.0
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 4.0e-86 322.8 386 49.7
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 7.0e-83 312.0 428 42.5
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 4.7e-79 299.3 394 44.4
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 2.6e-77 293.5 383 44.6
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 3.4e-77 293.1 209 68.4
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 1.9e-75 287.3 370 45.9
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 1.3e-73 281.2 408 43.4
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 3.0e-73 280.0 205 66.3
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 2.5e-72 276.9 340 47.1
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 2.4e-70 270.4 259 61.0
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 3.8e-68 263.1 274 55.8
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 8.4e-68 261.9 266 56.8
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 3.6e-63 246.5 290 50.7
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 7.6e-61 238.8 183 66.7
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 1.1e-56 224.9 116 87.9
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 5.3e-54 216.1 118 84.7
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 5.6e-48 196.1 155 67.1
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 3.5e-42 176.8 96 83.3
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 5.1e-41 172.9 356 34.0
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 1.9e-40 171.0 104 71.2
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 1.4e-38 164.9 149 60.4
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.0e-37 161.0 293 36.9
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 3.1e-30 137.1 265 35.8
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 1.0e-20 105.5 84 61.9
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 2.2e-20 104.4 103 57.3
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 4.1e-14 83.6 78 46.2


User provided reference genes

Program Settings