Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13783 Sapria himalayana HOM05D005770 ORTHO05D006702 8.8e-194 680.2 378 100.0
Potri.012G141400 Populus trichocarpa HOM05D005770 ORTHO05D006702 9.4e-71 271.6 290 50.3
Manes.06G147400 Manihot esculenta HOM05D005770 ORTHO05D006702 5.3e-66 255.8 264 52.7
SGA_v2.0_scaffold60G21044 Striga asiatica HOM05D005770 ORTHO05D006702 7.0e-66 255.4 409 42.8
Duzib205G0262 Durio zibethinus HOM05D005770 ORTHO05D006702 2.7e-65 253.4 274 51.5
Duzib084G0816 Durio zibethinus HOM05D005770 ORTHO05D006702 4.5e-65 252.7 275 51.6
Thecc.03G176800 Theobroma cacao HOM05D005770 ORTHO05D006702 7.7e-65 251.9 275 50.5
Cpa.g.sc107.54 Carica papaya HOM05D005770 ORTHO05D006702 2.9e-64 250.0 268 51.5
Cfa021839 Carpinus fangiana HOM05D005770 ORTHO05D006702 1.9e-63 247.3 269 52.0
CSS0038653 Camellia sinensis var. sinensis HOM05D005770 ORTHO05D006702 7.2e-63 245.4 226 55.3
Medtr1g100593 Medicago truncatula HOM05D005770 ORTHO05D006702 1.6e-62 244.2 355 45.4
QL09p014180 Quercus lobata HOM05D005770 ORTHO05D006702 2.1e-62 243.8 275 50.5
Prupe.2G294500 Prunus persica HOM05D005770 ORTHO05D006702 4.7e-62 242.7 260 51.5
CSS0016459 Camellia sinensis var. sinensis HOM05D005770 ORTHO05D006702 8.0e-62 241.9 258 51.9
Haze_13705 Corylus avellana HOM05D005770 ORTHO05D006702 8.0e-62 241.9 214 58.4
Aa31LG10G580 Aethionema arabicum HOM05D005770 ORTHO05D006702 1.0e-61 241.5 272 46.0
vmacro06680 Vaccinium macrocarpon HOM05D005770 ORTHO05D006702 8.8e-61 238.4 234 53.4
Ciclev10004849m.g Citrus clementina HOM05D005770 ORTHO05D006702 1.2e-60 238.0 272 48.9
Actinidia32859 Actinidia chinensis HOM05D005770 ORTHO05D006702 1.5e-60 237.7 224 55.4
COL.COLO4_14311 Corchorus olitorius HOM05D005770 ORTHO05D006702 2.0e-60 237.3 253 52.2
THA.LOC104822701 Tarenaya hassleriana HOM05D005770 ORTHO05D006702 2.6e-60 236.9 268 47.4
MD01G1201100 Malus domestica HOM05D005770 ORTHO05D006702 3.4e-60 236.5 267 49.8
CANSAT21G1021 Cannabis sativa HOM05D005770 ORTHO05D006702 5.7e-60 235.7 266 47.7
CiPaw.03G106500 Carya illinoinensis HOM05D005770 ORTHO05D006702 5.7e-60 235.7 274 50.7
Dinv35212 Davidia involucrata HOM05D001888 ORTHO05D001842 9.8e-60 235.0 224 54.9
PGR004G2488 Punica granatum HOM05D005770 ORTHO05D006702 9.8e-60 235.0 273 48.7
Hma1.2p1_1438F.1_g283370 Hydrangea macrophylla HOM05D005770 ORTHO05D006702 6.3e-59 232.3 224 54.9
Oeu056257.1 Olea europaea HOM05D005770 ORTHO05D006702 8.3e-59 231.9 214 55.6
RcHm_v2.0_Chr1g0377341 Rosa chinensis HOM05D005770 ORTHO05D006702 8.3e-59 231.9 224 53.1
THA.LOC104815678 Tarenaya hassleriana HOM05D005770 ORTHO05D006702 8.3e-59 231.9 268 46.3
TWI39G1137 Tripterygium wilfordii HOM05D005770 ORTHO05D006702 1.4e-58 231.1 271 47.6
Solyc01g097730.4 Solanum lycopersicum HOM05D005770 ORTHO05D006702 1.8e-58 230.7 224 53.6
Sopen01g041340 Solanum pennellii HOM05D005770 ORTHO05D006702 1.8e-58 230.7 224 53.6
TAR367G0010 Trochodendron aralioides HOM05D005770 ORTHO05D006702 1.8e-58 230.7 227 52.9
Carub.0001s4415 Capsella rubella HOM05D005770 ORTHO05D006702 2.4e-58 230.3 265 49.1
PGSC0003DMG400022513 Solanum tuberosum HOM05D005770 ORTHO05D006702 2.4e-58 230.3 224 53.6
TWI23G0309 Tripterygium wilfordii HOM05D005770 ORTHO05D006702 5.4e-58 229.2 273 48.4
FAN01G0434 Fragaria x ananassa HOM05D005770 ORTHO05D006702 1.2e-57 228.0 257 48.6
Nitab4.5_0005441g0030 Nicotiana tabacum HOM05D005770 ORTHO05D006702 1.2e-57 228.0 214 55.6
Nitab4.5_0005729g0100 Nicotiana tabacum HOM05D000001 ORTHO05D006702 1.2e-57 228.0 214 55.1
Sp1g41250 Schrenkiella parvula HOM05D005770 ORTHO05D006702 1.6e-57 227.6 269 48.7
Lj8C24G5 Lonicera japonica HOM05D005770 ORTHO05D006702 2.0e-57 227.3 254 48.8
CAN.G134.133 Capsicum annuum HOM05D005770 ORTHO05D006702 2.7e-57 226.9 222 53.2
AT1G55630 Arabidopsis thaliana HOM05D005770 ORTHO05D006702 5.9e-57 225.7 266 47.7
Glyma.10G235900 Glycine max HOM05D005770 ORTHO05D006702 5.9e-57 225.7 272 46.7
FAN03G2582 Fragaria x ananassa HOM05D005770 ORTHO05D006702 1.0e-56 224.9 257 48.2
Peaxi162Scf01049g00009 Petunia axillaris HOM05D005770 ORTHO05D006702 1.0e-56 224.9 224 53.1
MSTRG.27102 Avicennia marina HOM05D005770 ORTHO05D006702 1.3e-56 224.6 214 54.2
Eucgr.A02787 Eucalyptus grandis HOM05D005770 ORTHO05D006702 1.3e-56 224.6 232 52.6
MBI17_g21973_MAGBIO Magnolia biondii HOM05D005770 ORTHO05D006702 1.3e-56 224.6 227 51.5
Psat6g198600 Pisum sativum HOM05D005770 ORTHO05D006702 1.3e-56 224.6 266 47.7
FAN06G3626 Fragaria x ananassa HOM05D005770 ORTHO05D006702 2.3e-56 223.8 252 49.6
A06p00090 Brassica napus HOM05D005770 ORTHO05D006702 2.9e-56 223.4 260 46.9
Thhalv10005935m.g Eutrema salsugineum HOM05D005770 ORTHO05D006702 2.9e-56 223.4 208 54.8
AL1G63710 Arabidopsis lyrata HOM05D005770 ORTHO05D006702 5.0e-56 222.6 264 47.0
BraA06t23224Z Brassica rapa HOM05D005770 ORTHO05D006702 5.0e-56 222.6 260 46.5
CiPaw.04G071100 Carya illinoinensis HOM05D005770 ORTHO05D006702 5.0e-56 222.6 263 47.9
Thhalv10011441m.g Eutrema salsugineum HOM05D005770 ORTHO05D006702 5.0e-56 222.6 217 52.5
BcaB07g33196 Brassica carinata HOM05D005770 ORTHO05D006702 6.5e-56 222.2 262 47.3
Glyma.20G158600 Glycine max HOM05D005770 ORTHO05D006702 6.5e-56 222.2 244 50.4
FvH4_7g29500 Fragaria vesca HOM05D005770 ORTHO05D006702 8.6e-56 221.9 261 48.3
AL5G42240 Arabidopsis lyrata HOM05D005770 ORTHO05D006702 1.5e-55 221.1 210 53.3
FAN03G2589 Fragaria x ananassa HOM05D005770 ORTHO05D006702 1.5e-55 221.1 257 47.1
FAN06G3908 Fragaria x ananassa HOM05D005770 ORTHO05D006702 1.5e-55 221.1 261 48.3
Lalb_Chr02g0141051 Lupinus albus HOM05D005770 ORTHO05D006702 1.5e-55 221.1 258 45.7
Potri.015G144100 Populus trichocarpa HOM05D005770 ORTHO05D006702 1.5e-55 221.1 261 47.1
BcaC08g43641 Brassica carinata HOM05D005770 ORTHO05D006702 3.2e-55 219.9 260 46.2
C06p10600 Brassica napus HOM05D005770 ORTHO05D006702 3.2e-55 219.9 260 46.2
BolC6t36140H Brassica oleracea HOM05D005770 ORTHO05D006702 3.2e-55 219.9 260 46.2
AT3G60050 Arabidopsis thaliana HOM05D005770 ORTHO05D006702 4.2e-55 219.5 263 47.1
arahy.Tifrunner.gnm1.ann1.N888CD Arachis hypogaea HOM05D005770 ORTHO05D006702 9.5e-55 218.4 272 45.2
Sabra15G0153800 Salix brachista HOM05D005770 ORTHO05D006702 9.5e-55 218.4 261 47.1
CARHR170360 Cardamine hirsuta HOM05D005770 ORTHO05D006702 2.1e-54 217.2 215 52.6
DCAR_010313 Daucus carota HOM05D005770 ORTHO05D006702 2.8e-54 216.9 214 53.3
GSVIVG01028975001 Vitis vinifera HOM05D005770 ORTHO05D006702 4.7e-54 216.1 211 53.1
Sc13g0008700 Simmondsia chinensis HOM05D005770 ORTHO05D006702 1.0e-53 214.9 227 52.4
Migut.F00337 Erythranthe guttata HOM05D005770 ORTHO05D006702 1.8e-53 214.2 270 45.2
CARHR045330 Cardamine hirsuta HOM05D005770 ORTHO05D006702 2.3e-53 213.8 250 47.2
Gorai.008G277400 Gossypium raimondii HOM05D005770 ORTHO05D006702 2.3e-53 213.8 256 47.3
Cc04_g11130 Coffea canephora HOM05D005770 ORTHO05D006702 3.0e-53 213.4 219 48.9
Phvul.007G069900 Phaseolus vulgaris HOM05D005770 ORTHO05D006702 4.0e-53 213.0 206 53.9
Gohir.D12G259000 Gossypium hirsutum HOM05D005770 ORTHO05D006702 6.8e-53 212.2 256 46.9
TAR629G1232 Trochodendron aralioides HOM05D005770 ORTHO05D006702 1.5e-52 211.1 212 51.4
Sp5g03150 Schrenkiella parvula HOM05D005770 ORTHO05D006702 3.4e-52 209.9 255 46.7
TPR.G14338 Trifolium pratense HOM05D005770 ORTHO05D006702 4.4e-52 209.5 265 46.0
AUR62021190 Chenopodium quinoa HOM05D005770 ORTHO05D006702 4.9e-51 206.1 275 44.7
Gohir.A12G257700 Gossypium hirsutum HOM05D005770 ORTHO05D006702 4.9e-51 206.1 258 46.5
CsaV3_3G017100 Cucumis sativus L. HOM05D005770 ORTHO05D006702 8.3e-51 205.3 218 49.1
ECA232G1051 Erigeron canadensis HOM05D005770 ORTHO05D006702 8.3e-51 205.3 266 43.6
arahy.Tifrunner.gnm1.ann1.FD0XM2 Arachis hypogaea HOM05D005770 ORTHO05D006702 3.1e-50 203.4 271 42.8
Aa31LG2G1100 Aethionema arabicum HOM05D005770 ORTHO05D006702 1.6e-49 201.1 210 49.5
arahy.Tifrunner.gnm1.ann1.WS47X7 Arachis hypogaea HOM05D005770 ORTHO05D006702 1.6e-49 201.1 272 43.0
DCAR_031566 Daucus carota HOM05D005770 ORTHO05D006702 4.5e-49 199.5 259 46.7
C04p32660 Brassica napus HOM05D005770 ORTHO05D006702 7.8e-49 198.7 251 46.6
Lj2g0008451 Lotus japonicus HOM05D005770 ORTHO05D006702 1.7e-48 197.6 264 43.6
VMungo0720G2001 Vigna mungo HOM05D005770 ORTHO05D006702 1.7e-48 197.6 193 52.8
BcaC02g10107 Brassica carinata HOM05D005770 ORTHO05D006702 3.8e-48 196.4 251 45.8
BolC4t24834H Brassica oleracea HOM05D005770 ORTHO05D006702 3.8e-48 196.4 251 45.8
Ca_10769_v3 Cicer arietinum L. HOM05D005770 ORTHO05D006702 8.6e-48 195.3 232 47.0
SEGI_17014 Sequoiadendron giganteum HOM05D005770 ORTHO05D006702 2.5e-47 193.7 296 40.2
Lj5g0019820 Lotus japonicus HOM05D005770 ORTHO05D006702 4.3e-47 193.0 252 46.4
BcaB02g08196 Brassica carinata HOM05D005770 ORTHO05D006702 5.6e-47 192.6 204 51.0
A04p01900 Brassica napus HOM05D005770 ORTHO05D006702 7.3e-47 192.2 204 50.5
Lalb_Chr01g0009311 Lupinus albus HOM05D005770 ORTHO05D006702 7.3e-47 192.2 272 42.3
Ca_08604_v3 Cicer arietinum L. HOM05D005770 ORTHO05D006702 9.5e-47 191.8 204 49.0
Os10g0506000 Oryza sativa ssp. japonica HOM05D005770 ORTHO05D006702 3.6e-46 189.9 233 42.5
Lsat_1_v5_gn_9_55961 Lactuca sativa HOM05D005770 ORTHO05D006702 4.7e-46 189.5 235 45.5
BraA04t15913Z Brassica rapa HOM05D005770 ORTHO05D006702 6.1e-46 189.1 204 50.0
ATR0594G060 Amborella trichopoda HOM05D005770 ORTHO05D006702 8.0e-46 188.7 242 41.3
HanXRQChr09g0253591 Helianthus annuus HOM05D005770 ORTHO05D006702 8.0e-46 188.7 239 44.4
Sed0026879 Sechium edule HOM05D005770 ORTHO05D006702 2.3e-45 187.2 236 44.9
EL10Ac3g05616 Beta vulgaris HOM05D005770 ORTHO05D006702 6.8e-45 185.7 276 41.7
Aqoxy2G04147 Aquilegia oxysepala HOM05D005770 ORTHO05D006702 1.5e-44 184.5 218 45.4
Medtr6g045263 Medicago truncatula HOM05D005770 ORTHO05D006702 9.8e-44 181.8 204 46.1
HPP92_014751 Vanilla planifolia HOM05D005770 ORTHO05D006702 6.4e-43 179.1 265 41.5
Sed0008807 Sechium edule HOM05D005770 ORTHO05D006702 1.8e-42 177.6 192 49.0
Zm00001eb044070 Zea mays HOM05D005770 ORTHO05D006702 2.4e-42 177.2 238 40.3
Dinv28440 Davidia involucrata HOM05D005770 ORTHO05D006702 4.6e-41 172.9 125 67.2
EL10Ac3g05641 Beta vulgaris HOM05D005770 ORTHO05D006702 5.9e-41 172.6 191 49.2
SEGI_37272 Sequoiadendron giganteum HOM05D005770 ORTHO05D006702 2.3e-40 170.6 202 46.5
Aqoxy2G04148 Aquilegia oxysepala HOM05D005770 ORTHO05D006702 3.9e-40 169.9 214 42.5
TPR.G10755 Trifolium pratense HOM05D005770 ORTHO05D006702 3.9e-40 169.9 201 47.3
Atru.chr1.457 Acer truncatum HOM05D005770 ORTHO05D006702 1.1e-39 168.3 120 67.5
Ah.02g115560 Amaranthus hybridus HOM05D005770 ORTHO05D006702 5.6e-39 166.0 244 43.4
PSO210G6232 Papaver somniferum HOM05D005770 ORTHO05D006702 1.4e-37 161.4 218 43.6
PSO832G4086 Papaver somniferum HOM05D005770 ORTHO05D006702 1.4e-37 161.4 213 44.1
FAN10G4138 Fragaria x ananassa HOM05D005770 ORTHO05D006702 1.8e-37 161.0 374 32.6
ScUNg0000600 Simmondsia chinensis HOM05D005770 ORTHO05D006702 2.3e-37 160.6 125 63.2
CDE02G0404 Ceratophyllum demersum HOM05D005770 ORTHO05D006702 2.6e-36 157.1 253 36.8
Carub.0005s2679 Capsella rubella HOM05D005770 ORTHO05D006702 3.3e-31 140.2 196 43.9
Prupe.2G083800 Prunus persica HOM05D005770 ORTHO05D006702 4.6e-25 119.8 244 35.2
PSO832G0287 Papaver somniferum HOM05D005770 ORTHO05D006702 6.0e-17 92.8 193 32.1
PSO210G3347 Papaver somniferum HOM05D005770 ORTHO05D006702 1.0e-16 92.0 193 32.1
Actinidia34114 Actinidia chinensis HOM05D005770 ORTHO05D006702 3.4e-12 77.0 97 44.3
ClCG08G004220 Citrullus lanatus HOM05D007128 ORTHO05D009059 4.9e-11 73.2 356 21.3
Rhsim02G0073500 Rhododendron simsii HOM05D007128 ORTHO05D009059 2.7e-09 67.4 308 20.8
SalBow6G5229 Salvia bowleyana HOM05D007128 ORTHO05D009059 2.7e-09 67.4 266 23.3
Atru.chr3.1624 Acer truncatum HOM05D007128 ORTHO05D009059 4.6e-09 66.6 264 23.1
Sed0021713 Sechium edule HOM05D007128 ORTHO05D009059 7.8e-09 65.9 272 22.1
TWI38G2031 Tripterygium wilfordii HOM05D007128 ORTHO05D009059 1.3e-08 65.1 358 21.5
TAR633G0543 Trochodendron aralioides HOM05D007128 ORTHO05D009059 2.3e-08 64.3 272 21.7
Atru.BG.180.p Acer truncatum HOM05D006503 ORTHO05D008116 2.5e-07 60.8 94 33.0
Potri.007G123600 Populus trichocarpa HOM05D007128 ORTHO05D009059 2.5e-07 60.8 273 23.1
Sabra07G0100100 Salix brachista HOM05D007128 ORTHO05D009059 2.5e-07 60.8 276 22.5
CiPaw.01G104100 Carya illinoinensis HOM05D007128 ORTHO05D009059 3.3e-07 60.5 281 21.0
GSVIVG01033259001 Vitis vinifera HOM05D006503 ORTHO05D008116 4.3e-07 60.1 98 28.6
CSS0042104 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 5.6e-07 59.7 125 25.6
TAR633G2684 Trochodendron aralioides HOM05D000623 ORTHO05D008116 7.3e-07 59.3 91 30.8
Dinv22679 Davidia involucrata HOM05D007128 ORTHO05D009059 9.6e-07 58.9 275 19.6
HanXRQChr14g0455831 Helianthus annuus HOM05D007383 ORTHO05D009254 9.6e-07 58.9 177 23.2
Cc03_g13390 Coffea canephora HOM05D007128 ORTHO05D009059 1.3e-06 58.5 308 22.4
RcHm_v2.0_Chr4g0408411 Rosa chinensis HOM05D007128 ORTHO05D009059 1.6e-06 58.2 288 22.9
HanXRQChr02g0043781 Helianthus annuus HOM05D007383 ORTHO05D009254 2.1e-06 57.8 177 23.2
MSTRG.26768 Avicennia marina HOM05D007128 ORTHO05D009059 2.8e-06 57.4 264 21.2
Cpa.g.sc71.41 Carica papaya HOM05D007128 ORTHO05D009059 2.8e-06 57.4 264 21.2
Gohir.A02G014400 Gossypium hirsutum HOM05D007128 ORTHO05D009059 2.8e-06 57.4 273 21.2
Oeu061587.1 Olea europaea HOM05D007128 ORTHO05D009059 2.8e-06 57.4 258 21.3
HPP92_007727 Vanilla planifolia HOM05D007383 ORTHO05D009254 2.8e-06 57.4 192 24.0
Zm00001eb059330 Zea mays HOM05D011046 ORTHO05D013342 3.6e-06 57.0 248 20.6
PGSC0003DMG401003570 Solanum tuberosum HOM05D006503 ORTHO05D008116 4.8e-06 56.6 94 31.9
Zm00001eb253100 Zea mays HOM05D006596 ORTHO05D008497 4.8e-06 56.6 294 22.4
CSS0000010 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 6.2e-06 56.2 94 28.7
Aqoxy2G03122 Aquilegia oxysepala HOM05D007128 ORTHO05D009059 8.1e-06 55.8 153 22.9
MD04G1034700 Malus domestica HOM05D007128 ORTHO05D009059 8.1e-06 55.8 184 20.7
Nitab4.5_0002332g0010 Nicotiana tabacum HOM05D006503 ORTHO05D008116 8.1e-06 55.8 162 26.5
PSO566G0116 Papaver somniferum HOM05D007128 ORTHO05D009059 8.1e-06 55.8 208 21.6
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 8.1e-06 55.8 176 24.4
TAR633G2474 Trochodendron aralioides HOM05D006503 ORTHO05D008116 8.1e-06 55.8 91 29.7


User provided reference genes

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