Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 2.5e-62 241.9 116 100.0
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.0e-23 113.6 110 49.1
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 5.5e-22 107.8 103 48.5
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 5.5e-22 107.8 106 49.1
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 7.2e-22 107.5 106 45.3
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 9.4e-22 107.1 106 44.3
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 9.4e-22 107.1 106 44.3
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 1.2e-21 106.7 106 47.2
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 1.2e-21 106.7 106 48.1
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 1.6e-21 106.3 106 43.4
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 1.6e-21 106.3 106 44.3
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 2.1e-21 105.9 106 47.2
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 2.1e-21 105.9 106 46.2
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 2.1e-21 105.9 105 47.6
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 2.7e-21 105.5 100 47.0
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 2.7e-21 105.5 106 48.1
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 3.6e-21 105.1 106 47.2
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 3.6e-21 105.1 110 49.1
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 3.6e-21 105.1 110 49.1
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 3.6e-21 105.1 105 49.5
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 3.6e-21 105.1 106 48.1
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 6.1e-21 104.4 105 49.5
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 6.1e-21 104.4 106 48.1
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 8.0e-21 104.0 105 49.5
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 8.0e-21 104.0 106 48.1
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 8.0e-21 104.0 102 47.1
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 1.0e-20 103.6 106 46.2
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 1.0e-20 103.6 106 46.2
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 1.0e-20 103.6 102 47.1
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 1.0e-20 103.6 106 45.3
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 1.0e-20 103.6 98 51.0
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.0e-20 103.6 98 51.0
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.0e-20 103.6 98 51.0
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.0e-20 103.6 98 51.0
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.0e-20 103.6 98 51.0
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.0e-20 103.6 106 48.1
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 1.0e-20 103.6 106 48.1
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 1.4e-20 103.2 106 45.3
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 1.4e-20 103.2 106 46.2
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 1.4e-20 103.2 103 46.6
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 1.8e-20 102.8 106 45.3
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 1.8e-20 102.8 105 47.6
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 1.8e-20 102.8 105 46.7
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 1.8e-20 102.8 106 47.2
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.8e-20 102.8 106 46.2
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 2.3e-20 102.4 106 45.3
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 2.3e-20 102.4 105 47.6
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 3.0e-20 102.1 106 45.3
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.0e-20 102.1 106 43.4
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 3.0e-20 102.1 109 44.0
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 4.0e-20 101.7 106 45.3
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 5.2e-20 101.3 106 45.3
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.2e-20 101.3 98 49.0
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.2e-20 101.3 100 50.0
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 5.2e-20 101.3 105 46.7
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 5.2e-20 101.3 105 46.7
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 5.2e-20 101.3 106 41.5
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 6.8e-20 100.9 105 44.8
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 6.8e-20 100.9 105 44.8
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 6.8e-20 100.9 106 43.4
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 6.8e-20 100.9 105 45.7
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 8.8e-20 100.5 106 46.2
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 8.8e-20 100.5 103 47.6
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 1.2e-19 100.1 106 46.2
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 1.2e-19 100.1 106 45.3
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.5e-19 99.8 106 44.3
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.0e-19 99.4 106 42.5
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 2.0e-19 99.4 106 42.5
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 2.6e-19 99.0 106 44.3
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 2.6e-19 99.0 106 44.3
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 2.6e-19 99.0 106 45.3
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 3.4e-19 98.6 105 47.6
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 3.4e-19 98.6 98 45.9
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 4.4e-19 98.2 102 44.1
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 5.7e-19 97.8 106 44.3
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.7e-19 97.8 105 46.7
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 5.7e-19 97.8 106 43.4
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 7.5e-19 97.4 106 43.4
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 7.5e-19 97.4 105 45.7
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 7.5e-19 97.4 105 45.7
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 9.7e-19 97.1 106 46.2
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 9.7e-19 97.1 106 45.3
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 9.7e-19 97.1 105 44.8
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 9.7e-19 97.1 105 44.8
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 1.3e-18 96.7 106 44.3
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.3e-18 96.7 106 43.4
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 1.3e-18 96.7 98 46.9
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 1.7e-18 96.3 105 46.7
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 2.2e-18 95.9 106 44.3
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 2.2e-18 95.9 101 45.5
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 2.8e-18 95.5 99 44.4
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 4.8e-18 94.7 105 41.9
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 6.3e-18 94.4 100 47.0
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 6.3e-18 94.4 108 41.7
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 8.3e-18 94.0 106 42.5
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 8.3e-18 94.0 105 42.9
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 1.1e-17 93.6 106 41.5
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.1e-17 93.6 104 43.3
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.4e-17 93.2 99 44.4
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 1.4e-17 93.2 106 41.5
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.4e-17 93.2 106 43.4
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.4e-17 93.2 106 43.4
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 1.4e-17 93.2 105 42.9
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 1.8e-17 92.8 105 42.9
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 1.8e-17 92.8 104 44.2
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 4.1e-17 91.7 102 43.1
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 4.1e-17 91.7 105 41.0
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 5.3e-17 91.3 103 44.7
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 7.0e-17 90.9 105 41.9
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 7.0e-17 90.9 105 41.9
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 9.1e-17 90.5 109 37.6
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 9.1e-17 90.5 105 41.9
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.2e-16 90.1 105 41.9
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 1.6e-16 89.7 106 41.5
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 2.7e-16 89.0 105 40.0
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 3.5e-16 88.6 105 39.0
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.5e-16 88.6 102 43.1
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 3.5e-16 88.6 100 44.0
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 4.5e-16 88.2 104 41.3
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 4.5e-16 88.2 102 42.2
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 4.5e-16 88.2 105 40.0
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 4.5e-16 88.2 99 44.4
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 1.0e-15 87.0 107 43.0
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 1.0e-15 87.0 104 39.4
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.8e-15 85.1 106 39.6
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 1.1e-14 83.6 101 40.6
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 2.5e-14 82.4 92 44.6
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 1.2e-13 80.1 92 43.5
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 1.2e-13 80.1 106 37.7
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.7e-13 79.0 110 36.4
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 8.0e-13 77.4 108 36.1
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.2e-11 73.6 82 42.7
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 6.3e-10 67.8 106 34.0
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 1.1e-09 67.0 96 39.6
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 1.1e-09 67.0 96 39.6
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 1.1e-09 67.0 105 34.3
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 1.1e-09 67.0 90 41.1
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 4.1e-09 65.1 36 72.2
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 7.0e-09 64.3 37 73.0
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 2.7e-08 62.4 106 31.1
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 4.2e-06 55.1 98 27.6


User provided reference genes

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