Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13750 Sapria himalayana HOM05D005130 ORTHO05D006185 2.1e-94 349.0 171 100.0
arahy.Tifrunner.gnm1.ann1.J4ANAZ Arachis hypogaea HOM05D005130 ORTHO05D006185 2.6e-28 129.4 162 49.4
MELO3C005845.2 Cucumis melo HOM05D005130 ORTHO05D006185 3.8e-27 125.6 169 45.6
Manes.14G020900 Manihot esculenta HOM05D005130 ORTHO05D006185 3.8e-27 125.6 184 44.0
QL09p012297 Quercus lobata HOM05D005130 ORTHO05D006185 2.4e-26 122.9 183 43.2
TWI23G0534 Tripterygium wilfordii HOM05D005130 ORTHO05D006185 2.4e-26 122.9 173 44.5
CiPaw.06G004500 Carya illinoinensis HOM05D005130 ORTHO05D006185 3.2e-26 122.5 184 42.9
CsaV3_5G000990 Cucumis sativus L. HOM05D005130 ORTHO05D006185 4.2e-26 122.1 169 43.8
Potri.017G149900 Populus trichocarpa HOM05D005130 ORTHO05D006185 5.4e-26 121.7 184 42.4
Thecc.03G186500 Theobroma cacao HOM05D005130 ORTHO05D006185 5.4e-26 121.7 184 44.0
Lj1g0003335 Lotus japonicus HOM05D005130 ORTHO05D006185 1.2e-25 120.6 184 42.9
MD07G1280700 Malus domestica HOM05D005130 ORTHO05D006185 1.6e-25 120.2 171 45.0
Glyma.11G033800 Glycine max HOM05D005130 ORTHO05D006185 2.7e-25 119.4 172 43.0
arahy.Tifrunner.gnm1.ann1.0TLK73 Arachis hypogaea HOM05D005130 ORTHO05D006185 3.5e-25 119.0 171 43.9
arahy.Tifrunner.gnm1.ann1.9NW0T0 Arachis hypogaea HOM05D005130 ORTHO05D006185 3.5e-25 119.0 171 43.9
arahy.Tifrunner.gnm1.ann1.Q25QIN Arachis hypogaea HOM05D005130 ORTHO05D006185 3.5e-25 119.0 171 43.9
PGR142G1248 Punica granatum HOM05D005130 ORTHO05D006185 4.6e-25 118.6 171 44.4
Aqoxy2G00239 Aquilegia oxysepala HOM05D005130 ORTHO05D006185 6.0e-25 118.2 171 45.0
Duzib068G1086 Durio zibethinus HOM05D005130 ORTHO05D006185 6.0e-25 118.2 171 45.6
vmacro15551 Vaccinium macrocarpon HOM05D005130 ORTHO05D006185 6.0e-25 118.2 171 43.3
FvH4_7g30501 Fragaria vesca HOM05D005130 ORTHO05D006185 7.9e-25 117.9 171 43.9
Rhsim09G0201300 Rhododendron simsii HOM05D005130 ORTHO05D006185 7.9e-25 117.9 168 44.0
RcHm_v2.0_Chr1g0378911 Rosa chinensis HOM05D005130 ORTHO05D006185 7.9e-25 117.9 171 43.9
Sed0013201 Sechium edule HOM05D005130 ORTHO05D006185 7.9e-25 117.9 171 43.3
HanXRQChr13g0392411 Helianthus annuus HOM05D005130 ORTHO05D006185 1.0e-24 117.5 180 42.2
Ciclev10006067m.g Citrus clementina HOM05D005130 ORTHO05D006185 1.3e-24 117.1 171 43.9
Sabra17G0124800 Salix brachista HOM05D005130 ORTHO05D006185 1.3e-24 117.1 207 38.6
COL.COLO4_30286 Corchorus olitorius HOM05D005130 ORTHO05D006185 1.8e-24 116.7 184 43.5
Glyma.01G208400 Glycine max HOM05D005130 ORTHO05D006185 1.8e-24 116.7 172 40.7
Actinidia03144 Actinidia chinensis HOM05D005130 ORTHO05D006185 2.3e-24 116.3 184 40.8
Dinv28376 Davidia involucrata HOM05D005130 ORTHO05D006185 2.3e-24 116.3 171 43.3
Lsat_1_v5_gn_8_6421 Lactuca sativa HOM05D005130 ORTHO05D006185 2.3e-24 116.3 173 43.9
Cpa.g.sc3.2 Carica papaya HOM05D005130 ORTHO05D006185 3.0e-24 115.9 175 44.0
MD01G1210500 Malus domestica HOM05D005130 ORTHO05D006185 3.0e-24 115.9 172 42.4
Sed0017713 Sechium edule HOM05D005130 ORTHO05D006185 3.0e-24 115.9 171 42.7
Sopen03g003610 Solanum pennellii HOM05D005130 ORTHO05D006185 3.0e-24 115.9 171 42.7
CAN.G126.18 Capsicum annuum HOM05D005130 ORTHO05D006185 3.9e-24 115.5 171 42.7
Lalb_Chr03g0035011 Lupinus albus HOM05D005130 ORTHO05D006185 3.9e-24 115.5 184 41.8
Peaxi162Scf00057g00141 Petunia axillaris HOM05D005130 ORTHO05D006185 3.9e-24 115.5 171 42.7
CAN.G126.9 Capsicum annuum HOM05D005130 ORTHO05D006185 5.1e-24 115.2 171 42.1
Ca_18032_v3 Cicer arietinum L. HOM05D005130 ORTHO05D006185 5.1e-24 115.2 184 41.8
Dinv35271 Davidia involucrata HOM05D005130 ORTHO05D006185 5.1e-24 115.2 171 42.7
Thhalv10011827m.g Eutrema salsugineum HOM05D005130 ORTHO05D006185 5.1e-24 115.2 184 41.8
Prupe.2G302900 Prunus persica HOM05D005130 ORTHO05D006185 5.1e-24 115.2 172 42.4
AL1G58970 Arabidopsis lyrata HOM05D005130 ORTHO05D006185 6.7e-24 114.8 184 41.3
AT1G51160 Arabidopsis thaliana HOM05D005130 ORTHO05D006185 6.7e-24 114.8 184 41.3
Carub.0001s4007 Capsella rubella HOM05D005130 ORTHO05D006185 6.7e-24 114.8 184 41.3
Lalb_Chr19g0130471 Lupinus albus HOM05D005130 ORTHO05D006185 6.7e-24 114.8 184 41.8
Medtr4g048530 Medicago truncatula HOM05D005130 ORTHO05D006185 6.7e-24 114.8 184 41.3
Nitab4.5_0006023g0030 Nicotiana tabacum HOM05D005130 ORTHO05D006185 6.7e-24 114.8 185 40.0
BcaC08g43289 Brassica carinata HOM05D005130 ORTHO05D006185 1.1e-23 114.0 184 41.3
A06p02630 Brassica napus HOM05D005130 ORTHO05D006185 1.1e-23 114.0 184 41.3
C06p06390 Brassica napus HOM05D005130 ORTHO05D006185 1.1e-23 114.0 184 41.3
BolC6t35749H Brassica oleracea HOM05D005130 ORTHO05D006185 1.1e-23 114.0 184 41.3
CANSAT56G3795 Cannabis sativa HOM05D005130 ORTHO05D006185 1.1e-23 114.0 169 44.4
CARHR041190 Cardamine hirsuta HOM05D005130 ORTHO05D006185 1.1e-23 114.0 184 40.8
Cc02_g02200 Coffea canephora HOM05D005130 ORTHO05D006185 1.1e-23 114.0 171 44.4
Gohir.A11G012900 Gossypium hirsutum HOM05D005130 ORTHO05D006185 1.1e-23 114.0 184 42.4
Gorai.007G013500 Gossypium raimondii HOM05D005130 ORTHO05D006185 1.1e-23 114.0 184 42.4
TPR.G4673 Trifolium pratense HOM05D005130 ORTHO05D006185 1.9e-23 113.2 182 39.0
BraA06t23471Z Brassica rapa HOM05D005130 ORTHO05D006185 2.5e-23 112.8 184 40.8
Eucgr.H03367 Eucalyptus grandis HOM05D005130 ORTHO05D006185 2.5e-23 112.8 172 42.4
Medtr8g095450 Medicago truncatula HOM05D005130 ORTHO05D006185 2.5e-23 112.8 174 43.1
Phvul.002G057700 Phaseolus vulgaris HOM05D005130 ORTHO05D006185 2.5e-23 112.8 172 41.3
SalBow2G0720 Salvia bowleyana HOM05D005130 ORTHO05D006185 2.5e-23 112.8 169 42.0
THA.LOC104816907 Tarenaya hassleriana HOM05D005130 ORTHO05D006185 2.5e-23 112.8 184 40.8
vmacro09813 Vaccinium macrocarpon HOM05D005130 ORTHO05D006185 2.5e-23 112.8 172 41.9
Cfa008547 Carpinus fangiana HOM05D005130 ORTHO05D006185 3.3e-23 112.5 171 43.9
Duzib205G1022 Durio zibethinus HOM05D005130 ORTHO05D006185 3.3e-23 112.5 182 42.3
Eucgr.K02181 Eucalyptus grandis HOM05D005130 ORTHO05D006185 3.3e-23 112.5 171 43.3
Hund27400 Selenicereus undatus HOM05D005130 ORTHO05D006185 3.3e-23 112.5 176 40.3
Migut.F01076 Erythranthe guttata HOM05D005130 ORTHO05D006185 4.3e-23 112.1 177 37.9
Gorai.003G070000 Gossypium raimondii HOM05D005130 ORTHO05D006185 4.3e-23 112.1 183 40.4
PGSC0003DMG400020885 Solanum tuberosum HOM05D005130 ORTHO05D006185 4.3e-23 112.1 171 42.1
Aa31LG10G3450 Aethionema arabicum HOM05D005130 ORTHO05D006185 7.4e-23 111.3 184 40.8
Migut.F01073 Erythranthe guttata HOM05D005130 ORTHO05D006185 7.4e-23 111.3 171 41.5
Migut.F01078 Erythranthe guttata HOM05D005130 ORTHO05D006185 7.4e-23 111.3 171 41.5
Sc13g0009310 Simmondsia chinensis HOM05D005130 ORTHO05D006185 7.4e-23 111.3 171 40.9
CDE02G1119 Ceratophyllum demersum HOM05D005130 ORTHO05D006185 1.3e-22 110.5 169 39.6
FAN10G0799 Fragaria x ananassa HOM05D001916 ORTHO05D003272 1.3e-22 110.5 168 41.7
VMungo1215G2319 Vigna mungo HOM05D005130 ORTHO05D006185 1.3e-22 110.5 172 40.7
Hma1.2p1_0327F.1_g126520 Hydrangea macrophylla HOM05D005130 ORTHO05D006185 2.1e-22 109.8 170 42.4
BcaB04g17207 Brassica carinata HOM05D005130 ORTHO05D006185 2.8e-22 109.4 184 40.2
A08p02830 Brassica napus HOM05D005130 ORTHO05D006185 2.8e-22 109.4 184 40.2
BraA08t32317Z Brassica rapa HOM05D005130 ORTHO05D006185 2.8e-22 109.4 184 40.2
GSVIVG01028813001 Vitis vinifera HOM05D005130 ORTHO05D006185 4.8e-22 108.6 171 41.5
BcaC01g01491 Brassica carinata HOM05D005130 ORTHO05D006185 6.2e-22 108.2 184 40.2
GSVIVG01038576001 Vitis vinifera HOM05D005130 ORTHO05D006185 6.2e-22 108.2 171 40.9
Ah.05g173340 Amaranthus hybridus HOM05D005130 ORTHO05D006185 8.1e-22 107.8 171 40.4
BcaC01g01270 Brassica carinata HOM05D005130 ORTHO05D006185 8.1e-22 107.8 184 39.7
BolC3t21323H Brassica oleracea HOM05D005130 ORTHO05D006185 8.1e-22 107.8 184 39.7
PSO063G0462 Papaver somniferum HOM05D005130 ORTHO05D006185 1.4e-21 107.1 169 40.2
MSTRG.27076 Avicennia marina HOM05D005130 ORTHO05D006185 3.1e-21 105.9 184 38.0
PSO384G1339 Papaver somniferum HOM05D005130 ORTHO05D006185 3.1e-21 105.9 169 39.6
PSO339G0178 Papaver somniferum HOM05D005130 ORTHO05D006185 4.0e-21 105.5 169 39.6
BcaB07g33563 Brassica carinata HOM05D005130 ORTHO05D006185 5.3e-21 105.1 178 39.9
AUR62004123 Chenopodium quinoa HOM05D005130 ORTHO05D006185 6.9e-21 104.8 171 39.2
PSO782G0039 Papaver somniferum HOM05D005130 ORTHO05D006185 9.0e-21 104.4 169 39.6
ECA233G2204 Erigeron canadensis HOM05D005130 ORTHO05D006185 1.2e-20 104.0 189 39.2
unitig_0.g1157 Utricularia gibba HOM05D005130 ORTHO05D006185 2.0e-20 103.2 170 40.0
Eucgr.H04599 Eucalyptus grandis HOM05D005130 ORTHO05D006185 3.8e-19 99.0 149 42.3
FAN06G1878 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.4e-18 97.1 57 75.4
CSS0002576 Camellia sinensis var. sinensis HOM05D005130 ORTHO05D006185 2.5e-18 96.3 167 39.5
FAN10G0131 Fragaria x ananassa HOM05D001916 ORTHO05D003272 4.2e-18 95.5 167 40.1
Nn1g08437 Nelumbo nucifera HOM05D005130 ORTHO05D006185 7.1e-18 94.7 154 40.3
ClCG01G000850 Citrullus lanatus HOM05D005130 ORTHO05D006185 1.2e-17 94.0 55 74.5
C03p90030 Brassica napus HOM05D005130 ORTHO05D006185 2.7e-17 92.8 145 40.0
SEGI_19211 Sequoiadendron giganteum HOM05D005130 ORTHO05D006185 6.0e-17 91.7 176 36.4
Solyc03g007680.3 Solanum lycopersicum HOM05D005130 ORTHO05D006185 6.0e-17 91.7 154 40.3
Lj3C917T6 Lonicera japonica HOM05D005130 ORTHO05D006185 7.9e-17 91.3 154 39.6
Zm00001eb217960 Zea mays HOM05D005130 ORTHO05D006185 7.9e-17 91.3 177 35.0
Aqoxy3G03172 Aquilegia oxysepala HOM05D005130 ORTHO05D006185 1.0e-16 90.9 172 37.8
CDE09G0886 Ceratophyllum demersum HOM05D005130 ORTHO05D006185 1.0e-16 90.9 154 38.3
SGA_v2.0_scaffold10G05277 Striga asiatica HOM05D005130 ORTHO05D006185 1.3e-16 90.5 171 35.7
FAN06G4366 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.8e-16 90.1 53 73.6
Sabra17G0124900 Salix brachista HOM05D000100 ORTHO05D000052 1.8e-16 90.1 55 70.9
Hma1.2p1_1713F.1_g298920 Hydrangea macrophylla HOM05D005130 ORTHO05D006185 2.3e-16 89.7 151 40.4
DCAR_020276 Daucus carota HOM05D005130 ORTHO05D006185 3.0e-16 89.4 154 40.9
Zm00001eb052510 Zea mays HOM05D005130 ORTHO05D006185 3.0e-16 89.4 177 33.9
AUR62013718 Chenopodium quinoa HOM05D005130 ORTHO05D006185 5.1e-16 88.6 153 38.6
Gohir.D11G013200 Gossypium hirsutum HOM05D005130 ORTHO05D006185 6.7e-16 88.2 56 75.0
Nitab4.5_0000472g0310 Nicotiana tabacum HOM05D005130 ORTHO05D006185 8.7e-16 87.8 154 39.6
MBI07_g11727_MAGBIO Magnolia biondii HOM05D005130 ORTHO05D006185 1.1e-15 87.4 158 36.7
Os01g0513700 Oryza sativa ssp. japonica HOM05D005130 ORTHO05D006185 6.9e-13 78.2 56 58.9
AagrBONN_evm.TU.Sc2ySwM_362.2738 Anthoceros agrestis HOM05D005130 ORTHO05D006185 2.0e-12 76.6 56 57.1
Lj1A1007T60 Lonicera japonica HOM05D005130 ORTHO05D006185 1.7e-11 73.6 170 35.3
HPP92_005259 Vanilla planifolia HOM05D005130 ORTHO05D006185 1.7e-11 73.6 156 33.3
Ciclev10023954m.g Citrus clementina HOM05D005130 ORTHO05D006185 5.0e-11 72.0 64 54.7
Mapoly0052s0059 Marchantia polymorpha HOM05D005130 ORTHO05D006185 6.5e-11 71.6 58 55.2
SMO203G0049 Selaginella moellendorffii HOM05D005130 ORTHO05D006185 6.5e-11 71.6 56 57.1
Oeu040377.1 Olea europaea HOM05D005130 ORTHO05D006185 1.1e-10 70.9 55 58.2
Atru.ctg97_1.50 Acer truncatum HOM05D005130 ORTHO05D006185 5.5e-10 68.6 162 35.2
Prupe.2G018100 Prunus persica HOM05D005130 ORTHO05D006185 6.1e-09 65.1 39 74.4
Prupe.2G068700 Prunus persica HOM05D005130 ORTHO05D006185 1.0e-08 64.3 40 72.5
Prupe.2G055900 Prunus persica HOM05D005130 ORTHO05D006185 8.7e-08 61.2 39 71.8
A10p33340 Brassica napus HOM05D004046 ORTHO05D004716 7.4e-07 58.2 52 50.0
BraA10t45365Z Brassica rapa HOM05D004046 ORTHO05D004716 7.4e-07 58.2 52 50.0
AL6G11540 Arabidopsis lyrata HOM05D004046 ORTHO05D004716 9.7e-07 57.8 52 50.0
AT5G02280 Arabidopsis thaliana HOM05D004046 ORTHO05D004716 9.7e-07 57.8 52 50.0
BcaB07g33562 Brassica carinata HOM05D005130 ORTHO05D006185 9.7e-07 57.8 33 78.8
Carub.0006s0112 Capsella rubella HOM05D004046 ORTHO05D004716 9.7e-07 57.8 52 50.0
CARHR211090 Cardamine hirsuta HOM05D004046 ORTHO05D004716 9.7e-07 57.8 52 50.0
Thhalv10015468m.g Eutrema salsugineum HOM05D004046 ORTHO05D004716 9.7e-07 57.8 52 50.0
Thhalv10022901m.g Eutrema salsugineum HOM05D004046 ORTHO05D004716 9.7e-07 57.8 52 50.0
Sp6g40170 Schrenkiella parvula HOM05D004046 ORTHO05D004716 9.7e-07 57.8 52 50.0
BcaB01g06156 Brassica carinata HOM05D004046 ORTHO05D004716 1.3e-06 57.4 52 48.1
A03p00610 Brassica napus HOM05D004046 ORTHO05D004716 1.3e-06 57.4 52 48.1
C03p00880 Brassica napus HOM05D004046 ORTHO05D004716 1.3e-06 57.4 52 48.1
arahy.Tifrunner.gnm1.ann1.3XEJ8W Arachis hypogaea HOM05D005130 ORTHO05D006185 1.6e-06 57.0 34 76.5
C09p74250 Brassica napus HOM05D004046 ORTHO05D004716 1.6e-06 57.0 52 50.0
BolC9t60158H Brassica oleracea HOM05D004046 ORTHO05D004716 1.6e-06 57.0 52 50.0
SGA_v2.0_scaffold52G19001 Striga asiatica HOM05D005130 ORTHO05D006185 1.6e-06 57.0 34 70.6
Aa31LG1G22470 Aethionema arabicum HOM05D004046 ORTHO05D004716 2.2e-06 56.6 52 48.1
TAR374G0198 Trochodendron aralioides HOM05D002676 ORTHO05D006185 2.8e-06 56.2 33 75.8
MD12G1203200 Malus domestica HOM05D004046 ORTHO05D004716 3.7e-06 55.8 51 47.1
arahy.Tifrunner.gnm1.ann1.9T0Q39 Arachis hypogaea HOM05D004046 ORTHO05D004716 4.8e-06 55.5 51 47.1
arahy.Tifrunner.gnm1.ann1.D04R4W Arachis hypogaea HOM05D004046 ORTHO05D004716 4.8e-06 55.5 51 47.1
Psat7g198120 Pisum sativum HOM05D005130 ORTHO05D006185 4.8e-06 55.5 33 75.8
TPR.G18674 Trifolium pratense HOM05D004046 ORTHO05D004716 4.8e-06 55.5 50 48.0
TPR.G22016 Trifolium pratense HOM05D004046 ORTHO05D004716 4.8e-06 55.5 50 48.0
ATR0564G175 Amborella trichopoda HOM05D004046 ORTHO05D004716 6.3e-06 55.1 51 45.1
CAN.G1076.45 Capsicum annuum HOM05D004046 ORTHO05D004716 6.3e-06 55.1 51 47.1
Medtr5g075330 Medicago truncatula HOM05D004046 ORTHO05D004716 6.3e-06 55.1 50 46.0
Nitab4.5_0022238g0010 Nicotiana tabacum HOM05D004046 ORTHO05D004716 6.3e-06 55.1 53 43.4
PGSC0003DMG400002754 Solanum tuberosum HOM05D004046 ORTHO05D004716 6.3e-06 55.1 51 47.1
Ah.15g096470 Amaranthus hybridus HOM05D004046 ORTHO05D004716 8.2e-06 54.7 51 47.1
HanXRQChr05g0144301 Helianthus annuus HOM05D004046 ORTHO05D004716 8.2e-06 54.7 51 45.1
HanXRQChr14g0432401 Helianthus annuus HOM05D004046 ORTHO05D004716 8.2e-06 54.7 51 45.1
Nitab4.5_0003044g0050 Nicotiana tabacum HOM05D004046 ORTHO05D004716 8.2e-06 54.7 51 47.1
Nitab4.5_0011298g0030 Nicotiana tabacum HOM05D004046 ORTHO05D004716 8.2e-06 54.7 51 47.1


User provided reference genes

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