Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 8.4e-47 189.9 88 100.0
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 6.9e-33 143.7 84 75.0
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 5.8e-32 140.6 84 72.6
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 2.2e-31 138.7 84 73.8
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 8.4e-31 136.7 84 72.6
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 8.4e-31 136.7 84 73.8
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 2.5e-30 135.2 84 69.0
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 2.5e-30 135.2 84 71.4
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 9.3e-30 133.3 84 70.2
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 1.2e-29 132.9 84 70.2
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 1.6e-29 132.5 84 69.0
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 2.7e-29 131.7 84 69.0
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 3.5e-29 131.3 83 69.9
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 6.0e-29 130.6 84 70.2
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 7.9e-29 130.2 84 69.0
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 7.9e-29 130.2 84 67.9
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 7.9e-29 130.2 84 66.7
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 1.0e-28 129.8 81 70.4
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 1.0e-28 129.8 84 67.9
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 1.3e-28 129.4 84 70.2
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 1.3e-28 129.4 84 69.0
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 1.8e-28 129.0 84 67.9
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 1.8e-28 129.0 84 69.0
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 1.8e-28 129.0 84 69.0
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 1.8e-28 129.0 84 69.0
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 2.3e-28 128.6 84 69.0
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 2.3e-28 128.6 84 66.7
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 3.0e-28 128.3 81 67.9
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 3.0e-28 128.3 84 69.0
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 3.0e-28 128.3 84 69.0
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 3.0e-28 128.3 84 67.9
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 3.0e-28 128.3 81 70.4
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 3.0e-28 128.3 81 70.4
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 3.0e-28 128.3 84 69.0
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 3.9e-28 127.9 84 69.0
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 3.9e-28 127.9 84 67.9
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 3.9e-28 127.9 81 69.1
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 5.1e-28 127.5 84 66.7
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 5.1e-28 127.5 81 67.9
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 5.1e-28 127.5 81 67.9
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 5.1e-28 127.5 84 66.7
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 5.1e-28 127.5 81 69.1
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 5.1e-28 127.5 81 69.1
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 8.7e-28 126.7 84 66.7
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 8.7e-28 126.7 84 67.9
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 8.7e-28 126.7 84 67.9
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 8.7e-28 126.7 84 67.9
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 8.7e-28 126.7 84 67.9
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 1.1e-27 126.3 84 67.9
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 1.5e-27 125.9 84 66.7
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 2.5e-27 125.2 79 69.6
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 2.5e-27 125.2 84 65.5
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 3.3e-27 124.8 84 65.5
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 5.6e-27 124.0 84 65.5
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 9.6e-27 123.2 84 64.3
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 9.6e-27 123.2 81 66.7
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 9.6e-27 123.2 80 66.2
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 2.1e-26 122.1 84 64.3
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 2.8e-26 121.7 81 69.1
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 3.7e-26 121.3 84 65.5
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 3.7e-26 121.3 78 69.2
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 4.8e-26 120.9 84 64.3
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.2e-26 120.2 78 67.9
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.2e-26 120.2 78 67.9
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 8.2e-26 120.2 84 63.1
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 1.1e-25 119.8 84 65.5
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 1.4e-25 119.4 84 63.1
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 1.4e-25 119.4 84 64.3
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 1.8e-25 119.0 84 63.1
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 1.8e-25 119.0 84 63.1
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 1.8e-25 119.0 80 63.8
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 1.8e-25 119.0 81 63.0
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 2.4e-25 118.6 84 61.9
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.4e-25 118.6 78 66.7
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 2.4e-25 118.6 84 61.9
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 3.1e-25 118.2 75 66.7
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 3.1e-25 118.2 84 61.9
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 4.0e-25 117.9 84 61.9
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 4.0e-25 117.9 84 63.1
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 5.3e-25 117.5 99 56.6
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 1.2e-24 116.3 84 60.7
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 2.6e-24 115.2 80 62.5
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 1.3e-23 112.8 84 61.9
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 1.3e-23 112.8 81 61.7
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 2.2e-23 112.1 84 64.3
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 2.2e-23 112.1 81 61.7
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 2.2e-23 112.1 75 68.0
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 2.9e-23 111.7 84 57.1
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 3.8e-23 111.3 84 59.5
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 4.9e-23 110.9 79 58.2
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 8.4e-23 110.2 84 63.1
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 1.1e-22 109.8 84 58.3
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 4.2e-22 107.8 84 57.1
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 1.2e-21 106.3 84 56.0
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 6.7e-20 100.5 61 72.1
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 1.5e-19 99.4 60 75.0
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.9e-19 99.0 65 69.2
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 1.9e-19 99.0 81 56.8
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 2.2e-18 95.5 60 75.0
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 1.1e-17 93.2 84 53.6
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 1.4e-17 92.8 81 55.6
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 9.0e-17 90.1 50 78.0
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 2.2e-15 85.5 84 42.9
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 3.2e-14 81.6 81 46.9
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 1.6e-13 79.3 52 65.4
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 3.6e-13 78.2 84 47.6
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 1.0e-12 76.6 84 42.9
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 2.0e-11 72.4 55 60.0
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 2.5e-11 72.0 52 59.6
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 3.3e-11 71.6 50 64.0
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 9.7e-11 70.1 87 39.1
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 9.7e-11 70.1 87 39.1
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 8.2e-10 67.0 48 64.6
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 7.7e-08 60.5 62 43.5
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 2.9e-07 58.5 83 34.9


User provided reference genes

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