Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 2.4e-47 191.8 95 100.0
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 1.4e-18 96.3 77 59.7
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 3.4e-17 91.7 92 51.1
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 4.4e-17 91.3 94 52.1
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 5.7e-17 90.9 79 54.4
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 5.7e-17 90.9 92 50.0
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 7.5e-17 90.5 94 54.3
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 7.5e-17 90.5 94 54.3
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 7.5e-17 90.5 94 53.2
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 9.8e-17 90.1 77 57.1
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 1.3e-16 89.7 94 53.2
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 1.3e-16 89.7 94 50.0
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 1.7e-16 89.4 94 48.9
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 8.3e-16 87.0 94 50.0
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 8.3e-16 87.0 94 50.0
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 1.4e-15 86.3 76 56.6
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 1.8e-15 85.9 95 49.5
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 5.4e-15 84.3 94 48.9
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 7.0e-15 84.0 94 48.9
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 1.6e-14 82.8 93 49.5
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 2.0e-14 82.4 99 47.5
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 2.7e-14 82.0 94 48.9
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 2.7e-14 82.0 84 45.2
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.7e-14 82.0 94 46.8
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 3.5e-14 81.6 87 50.6
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 3.5e-14 81.6 87 50.6
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 3.5e-14 81.6 90 52.2
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 5.9e-14 80.9 87 48.3
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 5.9e-14 80.9 92 51.1
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 7.7e-14 80.5 93 47.3
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 1.0e-13 80.1 92 46.7
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 1.0e-13 80.1 94 46.8
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 1.0e-13 80.1 92 46.7
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 1.0e-13 80.1 92 46.7
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 1.0e-13 80.1 92 46.7
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 1.3e-13 79.7 77 50.6
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 1.7e-13 79.3 90 45.6
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 1.7e-13 79.3 90 45.6
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 1.7e-13 79.3 90 45.6
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 1.7e-13 79.3 69 53.6
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 2.3e-13 79.0 90 46.7
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 2.3e-13 79.0 95 45.3
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 2.3e-13 79.0 89 49.4
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 2.3e-13 79.0 90 44.4
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 2.9e-13 78.6 84 51.2
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 2.9e-13 78.6 71 53.5
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 2.9e-13 78.6 92 47.8
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 3.8e-13 78.2 94 46.8
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 5.0e-13 77.8 94 44.7
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 6.5e-13 77.4 90 44.4
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 6.5e-13 77.4 90 44.4
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 6.5e-13 77.4 95 50.5
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 6.5e-13 77.4 86 50.0
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 8.6e-13 77.0 90 44.4
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 8.6e-13 77.0 95 44.2
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 8.6e-13 77.0 93 47.3
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 1.5e-12 76.3 99 46.5
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 2.5e-12 75.5 94 41.5
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 3.2e-12 75.1 94 43.6
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 3.2e-12 75.1 71 52.1
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 3.2e-12 75.1 93 44.1
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 4.2e-12 74.7 93 43.0
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 5.5e-12 74.3 90 43.3
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 5.5e-12 74.3 95 47.4
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 5.5e-12 74.3 62 61.3
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 5.5e-12 74.3 90 46.7
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 9.5e-12 73.6 104 41.3
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 9.5e-12 73.6 92 45.7
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 1.2e-11 73.2 90 42.2
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 1.6e-11 72.8 93 43.0
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 2.1e-11 72.4 74 45.9
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 2.1e-11 72.4 71 50.7
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 2.1e-11 72.4 94 42.6
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 3.6e-11 71.6 71 50.7
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 4.7e-11 71.2 81 48.1
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 4.7e-11 71.2 87 44.8
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 6.1e-11 70.9 71 49.3
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 6.1e-11 70.9 93 45.2
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 6.1e-11 70.9 94 43.6
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 1.0e-10 70.1 100 43.0
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 1.8e-10 69.3 86 41.9
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 6.8e-10 67.4 59 52.5
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 8.8e-10 67.0 94 41.5
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.8e-10 67.0 71 43.7
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.8e-10 67.0 94 41.5
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 1.2e-09 66.6 94 41.5
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.5e-09 66.2 94 41.5
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 1.5e-09 66.2 108 41.7
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 2.0e-09 65.9 89 44.9
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 2.0e-09 65.9 79 48.1
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 3.4e-09 65.1 89 43.8
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 4.4e-09 64.7 89 43.8
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 2.2e-08 62.4 43 62.8
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 6.3e-08 60.8 77 45.5
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 1.8e-07 59.3 61 47.5
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 3.1e-07 58.5 76 42.1
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 5.4e-07 57.8 74 43.2
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 5.4e-07 57.8 70 41.4
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 9.2e-07 57.0 90 36.7
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 3.5e-06 55.1 68 41.2


User provided reference genes

Program Settings