Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 5.0e-282 973.8 491 100.0
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 1.1e-180 637.1 502 64.7
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 1.4e-180 636.7 515 63.3
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 3.6e-179 632.1 508 62.8
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 4.7e-179 631.7 493 64.3
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 6.1e-179 631.3 510 63.7
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 1.0e-178 630.6 509 63.7
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 1.0e-178 630.6 510 63.7
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 1.4e-178 630.2 516 63.2
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 1.8e-178 629.8 509 63.7
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 2.3e-178 629.4 509 63.5
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 3.0e-178 629.0 516 62.8
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 3.9e-178 628.6 516 63.0
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 3.9e-178 628.6 509 63.5
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 3.9e-178 628.6 515 62.1
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 5.1e-178 628.2 515 62.5
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 8.8e-178 627.5 516 62.8
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 2.6e-177 625.9 516 62.4
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 1.3e-176 623.6 519 63.2
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 3.7e-176 622.1 514 62.3
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 4.8e-176 621.7 511 62.2
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 6.3e-176 621.3 516 61.6
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 6.3e-176 621.3 512 62.9
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 6.3e-176 621.3 507 62.5
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 6.3e-176 621.3 510 62.9
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 1.8e-175 619.8 514 62.1
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 2.4e-175 619.4 516 61.4
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 3.1e-175 619.0 510 62.9
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 4.1e-175 618.6 503 61.8
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 4.1e-175 618.6 514 61.9
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 5.3e-175 618.2 505 63.8
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 9.1e-175 617.5 516 62.0
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 9.1e-175 617.5 512 61.7
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 9.1e-175 617.5 511 62.4
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 1.2e-174 617.1 515 62.1
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.5e-174 616.7 514 61.9
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 2.0e-174 616.3 515 61.6
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 4.5e-174 615.1 513 62.4
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 7.7e-174 614.4 516 61.0
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 1.0e-173 614.0 503 62.4
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 1.0e-173 614.0 511 62.0
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 1.3e-173 613.6 511 61.8
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 2.2e-173 612.8 507 62.1
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 2.2e-173 612.8 517 60.5
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 1.4e-172 610.1 518 61.2
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 5.5e-172 608.2 514 61.1
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 5.5e-172 608.2 505 62.2
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 5.5e-172 608.2 509 61.1
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 9.4e-172 607.4 520 61.5
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 2.1e-171 606.3 503 62.4
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 2.1e-171 606.3 512 60.4
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 2.7e-171 605.9 514 59.7
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 4.7e-171 605.1 506 62.1
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 6.1e-171 604.7 514 60.9
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 1.4e-170 603.6 512 61.3
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 3.0e-170 602.4 506 61.5
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 6.7e-170 601.3 505 60.6
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 8.8e-170 600.9 509 60.1
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 1.5e-169 600.1 503 61.0
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 2.0e-169 599.7 506 60.5
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 2.6e-169 599.4 495 62.4
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 7.4e-169 597.8 497 62.6
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 2.8e-168 595.9 507 60.6
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 6.3e-168 594.7 499 61.1
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 6.3e-168 594.7 517 59.6
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 4.1e-167 592.0 502 60.8
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 7.0e-167 591.3 487 62.2
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.2e-166 590.5 509 59.5
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 2.0e-166 589.7 514 59.7
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 2.6e-166 589.3 513 59.1
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 1.3e-165 587.0 498 60.8
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.2e-165 586.3 509 59.5
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 3.8e-165 585.5 513 58.7
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 8.5e-165 584.3 514 60.1
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 1.1e-164 583.9 511 59.5
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 1.9e-164 583.2 498 59.6
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 5.5e-164 581.6 508 59.4
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 4.7e-163 578.6 510 60.2
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 4.7e-163 578.6 509 59.5
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 6.1e-163 578.2 507 59.6
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 8.0e-163 577.8 508 59.4
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.8e-162 576.6 509 59.3
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 3.0e-162 575.9 513 58.3
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 4.0e-162 575.5 507 59.6
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 4.0e-162 575.5 504 58.1
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 5.2e-162 575.1 498 59.2
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 6.8e-162 574.7 493 59.2
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 6.8e-162 574.7 499 60.1
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 1.2e-161 573.9 507 59.0
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 1.5e-161 573.5 496 59.9
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.5e-161 573.5 508 58.9
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 2.6e-161 572.8 495 59.8
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 4.4e-161 572.0 518 56.8
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 2.2e-160 569.7 507 58.6
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 2.8e-160 569.3 511 58.1
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 2.4e-159 566.2 431 66.6
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 3.1e-159 565.8 501 59.3
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 5.3e-159 565.1 511 56.6
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 1.6e-158 563.5 508 57.3
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 4.5e-158 562.0 502 59.2
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 5.9e-158 561.6 504 58.9
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 1.0e-157 560.8 517 56.3
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 1.7e-157 560.1 501 58.5
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 1.1e-156 557.4 496 58.7
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 4.2e-156 555.4 520 55.4
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 6.1e-155 551.6 495 57.8
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 2.6e-153 546.2 511 58.5
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 5.7e-153 545.0 497 57.7
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 7.5e-153 544.7 510 56.3
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 2.2e-152 543.1 516 56.4
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 2.8e-152 542.7 505 57.6
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 1.0e-149 534.3 497 57.1
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 8.6e-149 531.2 477 57.9
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 7.5e-145 518.1 422 62.3
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 2.8e-144 516.2 512 52.1
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 3.9e-141 505.8 341 71.3
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 3.6e-139 499.2 507 52.9
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 1.0e-138 497.7 431 58.2
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 8.6e-133 478.0 384 61.2
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 1.2e-129 467.6 486 53.9
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 6.8e-122 441.8 479 49.1
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 1.2e-118 431.0 453 48.3
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 7.1e-111 405.2 505 45.5
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 2.1e-110 403.7 406 53.2
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 4.6e-110 402.5 520 43.3
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 1.7e-104 384.0 448 45.1
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 4.2e-103 379.4 257 68.9
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 1.7e-96 357.5 514 43.4
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.9e-80 303.5 481 41.0
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 7.2e-79 298.9 467 38.8
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 6.7e-77 292.4 443 42.2
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.6e-75 287.7 310 48.7
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 8.2e-75 285.4 483 40.4
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 1.9e-71 274.2 285 55.1
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 1.0e-64 251.9 366 42.6
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 1.4e-63 248.1 334 40.4
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 2.6e-60 237.3 332 39.2
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 7.7e-57 225.7 237 52.7
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 1.8e-45 188.0 493 31.2
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 9.8e-28 129.0 245 35.1
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 4.1e-26 123.6 127 55.9
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 7.0e-26 122.9 457 23.6
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 3.1e-13 80.9 92 54.3
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 3.2e-10 70.9 61 60.7


User provided reference genes

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