Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13678 Sapria himalayana HOM05D004735 ORTHO05D005243 1.6e-94 349.4 166 100.0
Manes.04G093600 Manihot esculenta HOM05D004735 ORTHO05D005243 6.9e-42 174.5 152 54.6
Duzib264G0086 Durio zibethinus HOM05D004735 ORTHO05D005243 3.4e-41 172.2 156 53.8
Potri.002G237800 Populus trichocarpa HOM05D004735 ORTHO05D005243 7.6e-41 171.0 155 54.8
Manes.11G076100 Manihot esculenta HOM05D004735 ORTHO05D005243 8.4e-40 167.5 156 51.3
Potri.014G144100 Populus trichocarpa HOM05D004735 ORTHO05D005243 2.4e-39 166.0 155 54.8
Sabra02G0181300 Salix brachista HOM05D004735 ORTHO05D005243 3.2e-39 165.6 166 51.8
Duzib147G0188 Durio zibethinus HOM05D004735 ORTHO05D005243 9.3e-39 164.1 151 52.3
Duzib187G1028 Durio zibethinus HOM05D004735 ORTHO05D005243 1.2e-38 163.7 156 52.6
Gorai.007G073000 Gossypium raimondii HOM05D004735 ORTHO05D005243 1.6e-38 163.3 156 53.2
Gohir.D11G068200 Gossypium hirsutum HOM05D004735 ORTHO05D005243 2.1e-38 162.9 156 53.2
Thecc.04G048500 Theobroma cacao HOM05D004735 ORTHO05D005243 2.1e-38 162.9 156 50.6
Nn4g22117 Nelumbo nucifera HOM05D004735 ORTHO05D005243 4.6e-38 161.8 157 53.5
Atru.chr6.2700 Acer truncatum HOM05D004735 ORTHO05D005243 6.0e-38 161.4 156 51.3
Gohir.A10G069900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 1.3e-37 160.2 156 53.2
Gorai.011G088500 Gossypium raimondii HOM05D004735 ORTHO05D005243 3.9e-37 158.7 156 52.6
Cfa007143 Carpinus fangiana HOM05D004735 ORTHO05D005243 8.7e-37 157.5 158 48.7
TWI32G0607 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 1.1e-36 157.1 156 50.0
Sabra14G0108800 Salix brachista HOM05D004735 ORTHO05D005243 1.5e-36 156.8 155 52.3
Gohir.A11G063866 Gossypium hirsutum HOM05D004735 ORTHO05D005243 3.3e-36 155.6 156 50.6
Gohir.D10G081300 Gossypium hirsutum HOM05D004735 ORTHO05D005243 3.3e-36 155.6 156 51.9
GSVIVG01032979001 Vitis vinifera HOM05D004735 ORTHO05D005243 5.6e-36 154.8 151 51.7
TWI60G1686 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 9.6e-36 154.1 156 49.4
Cpa.g.sc70.59 Carica papaya HOM05D004735 ORTHO05D005243 3.7e-35 152.1 152 46.7
Actinidia37716 Actinidia chinensis HOM05D004735 ORTHO05D005243 1.1e-34 150.6 156 50.0
QL02p069299 Quercus lobata HOM05D004735 ORTHO05D005243 1.1e-34 150.6 156 47.4
RcHm_v2.0_Chr2g0176561 Rosa chinensis HOM05D004735 ORTHO05D005243 1.1e-34 150.6 156 49.4
Lj2g0010549 Lotus japonicus HOM05D004735 ORTHO05D005243 1.4e-34 150.2 156 48.1
ATR0582G141 Amborella trichopoda HOM05D004735 ORTHO05D005243 1.8e-34 149.8 157 47.1
Haze_14980 Corylus avellana HOM05D004735 ORTHO05D005243 1.8e-34 149.8 160 47.5
Dinv25616 Davidia involucrata HOM05D004735 ORTHO05D005243 2.4e-34 149.4 156 49.4
Lalb_Chr21g0316971 Lupinus albus HOM05D004735 ORTHO05D005243 4.0e-34 148.7 156 46.8
Cc07_g01340 Coffea canephora HOM05D004735 ORTHO05D005243 9.0e-34 147.5 157 49.7
Lsat_1_v5_gn_3_104900 Lactuca sativa HOM05D004735 ORTHO05D005243 2.0e-33 146.4 156 46.8
Lalb_Chr22g0359841 Lupinus albus HOM05D004735 ORTHO05D005243 2.0e-33 146.4 156 46.2
Dinv33275 Davidia involucrata HOM05D004735 ORTHO05D005243 2.6e-33 146.0 152 48.0
FvH4_6g54340 Fragaria vesca HOM05D004735 ORTHO05D005243 2.6e-33 146.0 156 47.4
TPR.G15417 Trifolium pratense HOM05D004735 ORTHO05D005243 2.6e-33 146.0 157 47.1
CSS0050200 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 3.4e-33 145.6 152 46.1
MD17G1006400 Malus domestica HOM05D004735 ORTHO05D005243 3.4e-33 145.6 156 48.7
Migut.F00010 Erythranthe guttata HOM05D004735 ORTHO05D005243 4.5e-33 145.2 158 46.2
Glyma.16G147800 Glycine max HOM05D004735 ORTHO05D005243 4.5e-33 145.2 158 44.9
Lj7A617T73 Lonicera japonica HOM05D004735 ORTHO05D005243 4.5e-33 145.2 152 49.3
Prupe.3G314000 Prunus persica HOM05D004735 ORTHO05D005243 4.5e-33 145.2 156 48.1
TPR.G30897 Trifolium pratense HOM05D004735 ORTHO05D005243 4.5e-33 145.2 155 46.5
CANSAT64G0702 Cannabis sativa HOM05D004735 ORTHO05D005243 1.0e-32 144.1 156 46.8
FAN09G0836 Fragaria x ananassa HOM05D004735 ORTHO05D005243 1.0e-32 144.1 152 47.4
FAN14G4878 Fragaria x ananassa HOM05D004735 ORTHO05D005243 1.0e-32 144.1 152 47.4
THA.LOC104802362 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 1.3e-32 143.7 152 46.7
Glyma.02G066700 Glycine max HOM05D004735 ORTHO05D005243 1.7e-32 143.3 158 45.6
Medtr6g033235 Medicago truncatula HOM05D004735 ORTHO05D005243 2.2e-32 142.9 155 45.2
Psat0s787g0080 Pisum sativum HOM05D004735 ORTHO05D005243 2.2e-32 142.9 158 46.8
FAN05G2416 Fragaria x ananassa HOM05D004735 ORTHO05D005243 2.9e-32 142.5 152 47.4
Eucgr.G01927 Eucalyptus grandis HOM05D004735 ORTHO05D005243 6.5e-32 141.4 158 47.5
Lalb_Chr02g0156851 Lupinus albus HOM05D004735 ORTHO05D005243 6.5e-32 141.4 156 44.9
Oeu035383.1 Olea europaea HOM05D004735 ORTHO05D005243 1.4e-31 140.2 152 47.4
Peaxi162Scf00420g00843 Petunia axillaris HOM05D004735 ORTHO05D005243 1.4e-31 140.2 153 45.8
FAN02G4354 Fragaria x ananassa HOM05D004735 ORTHO05D005243 1.9e-31 139.8 152 46.1
Sc03g0005270 Simmondsia chinensis HOM05D004735 ORTHO05D005243 1.9e-31 139.8 157 45.9
THA.LOC104821139 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 1.9e-31 139.8 152 46.7
VMungo0464G0888 Vigna mungo HOM05D004735 ORTHO05D005243 1.9e-31 139.8 156 44.2
arahy.Tifrunner.gnm1.ann1.X964XN Arachis hypogaea HOM05D004735 ORTHO05D005243 3.2e-31 139.0 156 44.2
CSS0035487 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 3.2e-31 139.0 150 46.0
Ca_16589_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 3.2e-31 139.0 155 45.2
arahy.Tifrunner.gnm1.ann1.HAHJ6R Arachis hypogaea HOM05D004735 ORTHO05D005243 4.2e-31 138.7 156 43.6
CAN.G473.160 Capsicum annuum HOM05D004735 ORTHO05D005243 7.1e-31 137.9 155 45.2
CiPaw.03G001400 Carya illinoinensis HOM05D004735 ORTHO05D005243 7.1e-31 137.9 156 46.2
CDE06G2773 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 9.3e-31 137.5 154 46.8
Oeu035273.1 Olea europaea HOM05D004735 ORTHO05D005243 9.3e-31 137.5 147 44.9
Phvul.004G069600 Phaseolus vulgaris HOM05D004735 ORTHO05D005243 1.2e-30 137.1 156 43.6
Actinidia19551 Actinidia chinensis HOM05D004735 ORTHO05D005243 2.1e-30 136.3 120 50.0
Medtr7g084170 Medicago truncatula HOM05D004735 ORTHO05D005243 2.1e-30 136.3 157 45.9
MSTRG.24121 Avicennia marina HOM05D004735 ORTHO05D005243 2.7e-30 136.0 156 44.2
MD09G1002200 Malus domestica HOM05D004735 ORTHO05D005243 2.7e-30 136.0 138 48.6
TAR629G0422 Trochodendron aralioides HOM05D004735 ORTHO05D005243 2.7e-30 136.0 151 46.4
CARHR199450 Cardamine hirsuta HOM05D004735 ORTHO05D005243 3.5e-30 135.6 152 44.7
Hma1.2p1_0421F.1_g149860 Hydrangea macrophylla HOM05D004735 ORTHO05D005243 3.5e-30 135.6 156 44.9
vmacro18383 Vaccinium macrocarpon HOM05D004735 ORTHO05D005243 3.5e-30 135.6 147 47.6
Carub.0006s1214 Capsella rubella HOM05D004735 ORTHO05D005243 7.9e-30 134.4 152 43.4
Thhalv10012594m.g Eutrema salsugineum HOM05D004735 ORTHO05D005243 7.9e-30 134.4 152 43.4
Aa31LG11G15430 Aethionema arabicum HOM05D004735 ORTHO05D005243 1.0e-29 134.0 152 44.1
C03p07280 Brassica napus HOM05D004735 ORTHO05D005243 1.0e-29 134.0 157 43.9
Psat3g093080 Pisum sativum HOM05D004735 ORTHO05D005243 1.0e-29 134.0 157 44.6
BolC3t13230H Brassica oleracea HOM05D004735 ORTHO05D005243 1.3e-29 133.7 157 43.3
BcaB01g05325 Brassica carinata HOM05D004735 ORTHO05D005243 1.8e-29 133.3 151 43.0
HanXRQChr17g0550891 Helianthus annuus HOM05D004735 ORTHO05D005243 1.8e-29 133.3 136 46.3
Lj1g0021966 Lotus japonicus HOM05D004735 ORTHO05D005243 1.8e-29 133.3 156 45.5
SalBow4G2972 Salvia bowleyana HOM05D004735 ORTHO05D005243 2.3e-29 132.9 147 44.2
HanXRQChr15g0475721 Helianthus annuus HOM05D004735 ORTHO05D005243 3.0e-29 132.5 136 46.3
ECA246G4565 Erigeron canadensis HOM05D004735 ORTHO05D005243 3.9e-29 132.1 149 45.0
AL6G24610 Arabidopsis lyrata HOM05D004735 ORTHO05D005243 6.7e-29 131.3 152 43.4
PGR042G1405 Punica granatum HOM05D004735 ORTHO05D005243 6.7e-29 131.3 159 42.8
CSS0009135 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 1.5e-28 130.2 152 43.4
Sp6g30050 Schrenkiella parvula HOM05D004735 ORTHO05D005243 2.5e-28 129.4 156 42.3
Sed0022562 Sechium edule HOM05D004735 ORTHO05D005243 3.3e-28 129.0 157 42.0
MELO3C005100.2 Cucumis melo HOM05D004735 ORTHO05D005243 5.7e-28 128.3 157 43.3
A10p24440 Brassica napus HOM05D004735 ORTHO05D005243 7.4e-28 127.9 155 40.6
AT5G13950 Arabidopsis thaliana HOM05D004735 ORTHO05D005243 9.6e-28 127.5 152 42.8
CsaV3_5G024940 Cucumis sativus L. HOM05D004735 ORTHO05D005243 1.3e-27 127.1 157 42.7
MBI07_g13942_MAGBIO Magnolia biondii HOM05D004735 ORTHO05D005243 2.1e-27 126.3 157 43.9
BolC9t59152H Brassica oleracea HOM05D004735 ORTHO05D005243 2.8e-27 125.9 155 40.0
Hund12196 Selenicereus undatus HOM05D004735 ORTHO05D005243 2.8e-27 125.9 156 38.5
Solyc02g094530.1 Solanum lycopersicum HOM05D004735 ORTHO05D005243 2.8e-27 125.9 154 42.2
Nitab4.5_0002172g0170 Nicotiana tabacum HOM05D004735 ORTHO05D005243 3.7e-27 125.6 152 44.1
Nitab4.5_0000519g0300 Nicotiana tabacum HOM05D004735 ORTHO05D005243 4.8e-27 125.2 152 44.1
SGA_v2.0_scaffold423G51443 Striga asiatica HOM05D004735 ORTHO05D005243 4.8e-27 125.2 160 43.8
Sopen02g039210 Solanum pennellii HOM05D004735 ORTHO05D005243 6.2e-27 124.8 154 42.2
Ah.13g074210 Amaranthus hybridus HOM05D004735 ORTHO05D005243 1.1e-26 124.0 157 42.0
C09p63170 Brassica napus HOM05D004735 ORTHO05D005243 1.4e-26 123.6 155 39.4
AUR62030086 Chenopodium quinoa HOM05D004735 ORTHO05D005243 3.1e-26 122.5 158 40.5
AUR62038220 Chenopodium quinoa HOM05D004735 ORTHO05D005243 4.0e-26 122.1 158 40.5
PSO478G1205 Papaver somniferum HOM05D004735 ORTHO05D005243 1.2e-25 120.6 156 40.4
PSO017G6705 Papaver somniferum HOM05D004735 ORTHO05D005243 1.5e-25 120.2 156 40.4
CSS0022550 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 5.8e-25 118.2 128 48.4
Ah.07g203970 Amaranthus hybridus HOM05D004735 ORTHO05D005243 5.0e-24 115.2 158 40.5
Zm00001eb307010 Zea mays HOM05D004735 ORTHO05D005243 5.5e-23 111.7 114 48.2
Ca_08203_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 1.2e-22 110.5 125 45.6
CDE02G4423 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 3.5e-22 109.0 126 44.4
SEGI_21903 Sequoiadendron giganteum HOM05D004735 ORTHO05D005243 3.5e-22 109.0 159 37.7
CiPaw.04G001000 Carya illinoinensis HOM05D004735 ORTHO05D005243 1.3e-21 107.1 88 54.5
unitig_0.g1642 Utricularia gibba HOM05D004735 ORTHO05D005243 2.2e-19 99.8 132 40.2
ClCG01G007860 Citrullus lanatus HOM05D004735 ORTHO05D005243 1.1e-18 97.4 138 39.1
TAR371G0169 Trochodendron aralioides HOM05D004735 ORTHO05D008917 1.2e-17 94.0 72 56.9
EL10Ac3g06356 Beta vulgaris HOM05D004735 ORTHO05D005243 1.2e-14 84.0 153 32.7
DCAR_014465 Daucus carota HOM05D004735 ORTHO05D005243 3.6e-14 82.4 104 44.2
CBR_g32498 Chara braunii HOM05D004735 ORTHO05D005243 3.9e-13 79.0 80 41.2
Mapoly0002s0042 Marchantia polymorpha HOM05D002855 ORTHO05D004406 1.2e-09 67.4 75 42.7
SMO364G0040 Selaginella moellendorffii HOM05D004735 ORTHO05D005243 1.5e-09 67.0 106 32.1
SMO112G0099 Selaginella moellendorffii HOM05D004735 ORTHO05D005243 2.0e-09 66.6 102 33.3
Zm00001eb355300 Zea mays HOM05D002855 ORTHO05D004406 5.0e-08 62.0 78 43.6
Zm00001eb265670 Zea mays HOM05D002855 ORTHO05D004406 8.5e-08 61.2 78 44.9
CDE09G0123 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 3.2e-07 59.3 72 40.3
ATR0594G221 Amborella trichopoda HOM05D002855 ORTHO05D004406 7.2e-07 58.2 73 39.7
A02p02280 Brassica napus HOM05D004735 ORTHO05D005243 7.2e-07 58.2 55 45.5
CDE02G2912 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 7.2e-07 58.2 72 38.9
PSO832G3558 Papaver somniferum HOM05D002855 ORTHO05D004406 7.2e-07 58.2 72 37.5
Cc01_g11990 Coffea canephora HOM05D002855 ORTHO05D004406 1.2e-06 57.4 78 42.3
Solyc11g072810.2 Solanum lycopersicum HOM05D002855 ORTHO05D004406 1.2e-06 57.4 72 43.1
Sopen11g030480 Solanum pennellii HOM05D002855 ORTHO05D004406 1.2e-06 57.4 72 43.1
Lalb_Chr22g0350101 Lupinus albus HOM05D002855 ORTHO05D004406 1.6e-06 57.0 73 39.7
PGSC0003DMG400015522 Solanum tuberosum HOM05D002855 ORTHO05D004406 1.6e-06 57.0 72 43.1
ClCG02G020560 Citrullus lanatus HOM05D002855 ORTHO05D004406 2.1e-06 56.6 72 40.3
MELO3C025710.2 Cucumis melo HOM05D002855 ORTHO05D004406 2.1e-06 56.6 72 40.3
Peaxi162Scf00836g00219 Petunia axillaris HOM05D002855 ORTHO05D004406 2.1e-06 56.6 72 43.1
TAR633G1422 Trochodendron aralioides HOM05D002855 ORTHO05D004406 2.1e-06 56.6 76 38.2
Lalb_Chr22g0350071 Lupinus albus HOM05D002855 ORTHO05D004406 3.6e-06 55.8 73 38.4
MBI05_g19645_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 4.7e-06 55.5 72 37.5
Sed0021885 Sechium edule HOM05D002855 ORTHO05D004406 4.7e-06 55.5 73 38.4
AagrBONN_evm.TU.Sc2ySwM_228.4027 Anthoceros agrestis HOM05D002855 ORTHO05D004406 6.1e-06 55.1 72 37.5
Haze_23986 Corylus avellana HOM05D002855 ORTHO05D004406 6.1e-06 55.1 73 38.4
Haze_23987 Corylus avellana HOM05D002855 ORTHO05D004406 6.1e-06 55.1 73 38.4
CsaV3_6G022000 Cucumis sativus L. HOM05D002855 ORTHO05D004406 6.1e-06 55.1 72 38.9
MBI14_g42162_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 6.1e-06 55.1 72 38.9
Nitab4.5_0003784g0030 Nicotiana tabacum HOM05D002855 ORTHO05D004406 6.1e-06 55.1 72 41.7
Aqoxy4G03112 Aquilegia oxysepala HOM05D002855 ORTHO05D004406 7.9e-06 54.7 74 36.5
AL1G11620 Arabidopsis lyrata HOM05D002855 ORTHO05D010889 7.9e-06 54.7 76 35.5
CBR_g17672 Chara braunii HOM05D002855 ORTHO05D004406 7.9e-06 54.7 67 41.8
Thhalv10009871m.g Eutrema salsugineum HOM05D002855 ORTHO05D010889 7.9e-06 54.7 76 35.5
Sc12g0001880 Simmondsia chinensis HOM05D002855 ORTHO05D004406 7.9e-06 54.7 78 38.5


User provided reference genes

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