Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 4.6e-132 474.6 235 100.0
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 9.3e-77 290.8 225 63.6
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 1.2e-76 290.4 225 63.6
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 1.8e-75 286.6 231 63.2
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 8.7e-75 284.3 200 68.0
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 6.3e-73 278.1 241 58.9
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.4e-72 276.9 213 62.4
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.8e-72 276.6 213 62.4
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 5.3e-72 275.0 211 60.7
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 5.3e-72 275.0 221 61.5
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 9.0e-72 274.2 226 60.6
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 9.0e-72 274.2 215 60.9
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 9.0e-72 274.2 213 62.0
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 9.0e-72 274.2 212 63.2
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 1.2e-71 273.9 210 61.0
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 1.5e-71 273.5 198 65.7
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 2.6e-71 272.7 219 60.3
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 5.9e-71 271.6 212 61.8
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 1.3e-70 270.4 212 60.8
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.7e-70 270.0 211 60.2
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 1.7e-70 270.0 215 60.0
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 2.2e-70 269.6 210 63.3
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.4e-69 266.9 222 61.3
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 1.9e-69 266.5 221 61.1
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 1.9e-69 266.5 216 62.5
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 2.5e-69 266.2 190 65.8
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 3.2e-69 265.8 197 66.5
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 4.2e-69 265.4 198 65.2
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 1.2e-68 263.8 212 63.7
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 1.6e-68 263.5 228 59.2
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 4.6e-68 261.9 195 66.7
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 6.1e-68 261.5 197 64.5
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 6.1e-68 261.5 225 56.4
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 6.1e-68 261.5 213 59.2
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 7.9e-68 261.2 216 60.2
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 7.9e-68 261.2 225 56.4
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 1.3e-67 260.4 189 65.6
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 2.3e-67 259.6 205 61.0
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 3.9e-67 258.8 206 63.6
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 5.1e-67 258.5 201 61.2
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 6.7e-67 258.1 207 61.8
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 6.7e-67 258.1 212 59.9
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 8.7e-67 257.7 223 57.0
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 8.7e-67 257.7 223 57.0
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 1.1e-66 257.3 186 68.3
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 1.5e-66 256.9 209 57.9
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 1.5e-66 256.9 201 61.7
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 1.5e-66 256.9 211 57.8
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 1.5e-66 256.9 190 64.2
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 1.9e-66 256.5 187 63.6
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 4.3e-66 255.4 196 64.8
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 4.3e-66 255.4 187 67.9
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 4.3e-66 255.4 213 59.2
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 5.7e-66 255.0 208 59.6
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 5.7e-66 255.0 212 58.5
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 5.7e-66 255.0 206 62.6
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 5.7e-66 255.0 188 65.4
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 7.4e-66 254.6 203 60.6
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 7.4e-66 254.6 185 64.3
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 7.4e-66 254.6 185 64.3
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 7.4e-66 254.6 185 64.3
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 7.4e-66 254.6 212 58.0
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 9.7e-66 254.2 188 64.9
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 9.7e-66 254.2 188 65.4
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.3e-65 253.8 194 63.9
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 1.3e-65 253.8 188 64.9
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 1.6e-65 253.4 186 63.4
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.6e-65 253.4 185 64.9
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.6e-65 253.4 185 64.9
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 3.7e-65 252.3 186 62.9
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 3.7e-65 252.3 213 57.7
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 3.7e-65 252.3 216 60.6
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 3.7e-65 252.3 188 63.8
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 4.8e-65 251.9 185 63.8
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 6.3e-65 251.5 187 64.7
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 8.2e-65 251.1 185 63.8
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 8.2e-65 251.1 191 63.9
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 8.2e-65 251.1 193 63.7
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 1.8e-64 250.0 189 64.0
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 1.8e-64 250.0 213 57.3
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 1.8e-64 250.0 211 62.1
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 3.1e-64 249.2 185 62.7
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 4.1e-64 248.8 198 61.1
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 6.9e-64 248.1 186 64.5
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 1.5e-63 246.9 188 63.8
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 1.5e-63 246.9 201 61.2
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.5e-63 246.9 201 61.2
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.5e-63 246.9 201 61.2
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.5e-63 246.9 201 61.2
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 2.0e-63 246.5 166 67.5
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 3.4e-63 245.7 203 62.1
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 5.9e-63 245.0 202 62.9
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 1.3e-62 243.8 203 59.1
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 1.7e-62 243.4 199 62.3
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 1.7e-62 243.4 172 70.3
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 2.5e-61 239.6 187 62.6
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 3.2e-61 239.2 266 49.2
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 7.9e-60 234.6 188 61.7
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 1.0e-59 234.2 166 68.1
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 1.4e-59 233.8 168 69.6
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 1.8e-59 233.4 188 62.2
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.8e-59 233.4 225 54.7
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 3.0e-59 232.6 187 59.9
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 6.7e-59 231.5 194 60.3
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 8.8e-59 231.1 199 62.3
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 2.0e-58 229.9 190 62.1
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 3.3e-58 229.2 167 64.1
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 7.4e-58 228.0 203 58.1
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 2.4e-56 223.0 222 52.7
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 3.2e-53 212.6 159 64.2
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 2.7e-52 209.5 193 54.4
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 1.4e-51 207.2 205 52.7
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 1.8e-51 206.8 199 54.3
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 1.1e-48 197.6 155 63.2
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 1.8e-48 196.8 151 67.5
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 1.2e-47 194.1 186 57.0
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 1.6e-47 193.7 175 58.3
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 2.6e-47 193.0 168 60.7
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 1.7e-46 190.3 185 52.4
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.7e-46 190.3 132 64.4
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 4.2e-45 185.7 155 61.3
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 6.1e-44 181.8 138 65.9
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 1.9e-37 160.2 137 54.7
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.6e-36 156.0 107 62.6
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.1e-32 142.5 201 43.8
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 2.9e-30 136.3 91 65.9
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 7.2e-29 131.7 138 44.9
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 9.5e-29 131.3 137 49.6
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 1.2e-28 131.0 133 47.4
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.0e-27 126.3 195 43.1
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 4.4e-26 122.5 91 58.2
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 1.1e-24 117.9 128 49.2
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 9.2e-24 114.8 99 62.6
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 4.5e-23 112.5 108 56.5
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 4.5e-23 112.5 108 56.5
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 4.0e-19 99.4 118 49.2
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 1.1e-16 91.3 75 62.7
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.3e-13 79.3 142 40.8
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 9.5e-13 78.2 84 50.0
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 4.9e-09 65.9 43 62.8
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 4.6e-07 59.3 58 53.4
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 1.0e-06 58.2 37 64.9


User provided reference genes

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