Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 1.1e-52 209.5 97 100.0
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 5.8e-25 117.5 62 79.0
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 4.9e-24 114.4 60 85.0
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 1.9e-23 112.5 60 83.3
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 2.4e-23 112.1 60 83.3
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 7.1e-23 110.5 60 81.7
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 9.3e-23 110.2 62 75.8
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 1.2e-22 109.8 61 78.7
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 6.0e-22 107.5 64 78.1
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 7.9e-22 107.1 61 82.0
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 7.9e-22 107.1 60 80.0
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 7.9e-22 107.1 66 71.2
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 1.0e-21 106.7 61 82.0
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 1.0e-21 106.7 61 82.0
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.3e-21 106.3 61 80.3
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 1.8e-21 105.9 61 80.3
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 1.8e-21 105.9 61 77.0
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 1.8e-21 105.9 61 78.7
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 1.8e-21 105.9 55 83.6
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 2.3e-21 105.5 60 83.3
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 3.0e-21 105.1 61 80.3
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 3.0e-21 105.1 61 80.3
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 3.9e-21 104.8 60 81.7
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 3.9e-21 104.8 60 83.3
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 3.9e-21 104.8 61 80.3
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 3.9e-21 104.8 64 73.4
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 3.9e-21 104.8 61 77.0
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 3.9e-21 104.8 62 77.4
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 3.9e-21 104.8 61 78.7
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 6.7e-21 104.0 61 75.4
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 6.7e-21 104.0 61 78.7
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 8.7e-21 103.6 55 78.2
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 1.1e-20 103.2 60 80.0
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 1.1e-20 103.2 66 69.7
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 1.5e-20 102.8 61 77.0
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 3.3e-20 101.7 58 75.9
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 3.3e-20 101.7 85 56.5
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 5.6e-20 100.9 60 76.7
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 5.6e-20 100.9 60 76.7
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 5.6e-20 100.9 65 73.8
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 5.6e-20 100.9 62 74.2
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 7.4e-20 100.5 66 69.7
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 9.6e-20 100.1 54 81.5
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 9.6e-20 100.1 68 70.6
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.3e-19 99.8 54 81.5
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 1.3e-19 99.8 53 79.2
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 1.3e-19 99.8 60 73.3
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 1.6e-19 99.4 60 78.3
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 1.6e-19 99.4 57 82.5
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.1e-19 99.0 62 75.8
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.1e-19 99.0 62 75.8
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.1e-19 99.0 62 75.8
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.8e-19 98.6 63 74.6
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 2.8e-19 98.6 61 77.0
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 3.7e-19 98.2 66 66.7
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 3.7e-19 98.2 62 74.2
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 4.8e-19 97.8 61 75.4
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 4.8e-19 97.8 60 76.7
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 4.8e-19 97.8 63 76.2
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 4.8e-19 97.8 60 75.0
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 4.8e-19 97.8 62 75.8
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 6.2e-19 97.4 61 73.8
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 6.2e-19 97.4 61 73.8
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 6.2e-19 97.4 56 80.4
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 6.2e-19 97.4 61 77.0
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 6.2e-19 97.4 61 77.0
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 6.2e-19 97.4 61 73.8
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 6.2e-19 97.4 61 77.0
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 6.2e-19 97.4 62 75.8
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 8.2e-19 97.1 61 75.4
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 8.2e-19 97.1 62 77.4
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 8.2e-19 97.1 59 78.0
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.1e-18 96.7 61 73.8
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 1.1e-18 96.7 61 77.0
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 1.1e-18 96.7 64 70.3
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.1e-18 96.7 61 75.4
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 1.1e-18 96.7 57 73.7
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 1.1e-18 96.7 62 74.2
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 1.1e-18 96.7 61 72.1
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 1.1e-18 96.7 61 77.0
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 1.4e-18 96.3 57 68.4
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 1.4e-18 96.3 56 78.6
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 1.4e-18 96.3 56 78.6
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 1.4e-18 96.3 60 76.7
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 1.4e-18 96.3 91 52.7
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.8e-18 95.9 61 73.8
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 1.8e-18 95.9 61 77.0
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 1.8e-18 95.9 55 80.0
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 1.8e-18 95.9 54 81.5
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 1.8e-18 95.9 61 73.8
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.8e-18 95.9 54 77.8
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.8e-18 95.9 54 77.8
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 1.8e-18 95.9 61 73.8
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 2.4e-18 95.5 60 73.3
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 2.4e-18 95.5 61 68.9
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 2.4e-18 95.5 56 75.0
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 3.1e-18 95.1 61 77.0
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 3.1e-18 95.1 60 73.3
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 3.1e-18 95.1 56 71.4
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 3.1e-18 95.1 60 71.7
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 3.1e-18 95.1 64 68.8
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 4.0e-18 94.7 55 78.2
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 4.0e-18 94.7 55 78.2
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 5.3e-18 94.4 61 75.4
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 5.3e-18 94.4 61 72.1
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 5.3e-18 94.4 60 68.3
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 6.9e-18 94.0 63 69.8
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 6.9e-18 94.0 61 72.1
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 6.9e-18 94.0 58 74.1
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 6.9e-18 94.0 54 74.1
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 6.9e-18 94.0 54 74.1
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 6.9e-18 94.0 54 74.1
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 6.9e-18 94.0 62 71.0
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 9.0e-18 93.6 61 67.2
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 1.2e-17 93.2 53 77.4
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 1.2e-17 93.2 53 77.4
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 1.2e-17 93.2 57 73.7
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 1.2e-17 93.2 61 67.2
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 1.5e-17 92.8 52 76.9
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.5e-17 92.8 61 70.5
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 2.0e-17 92.4 60 73.3
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 3.4e-17 91.7 61 70.5
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 4.5e-17 91.3 61 70.5
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 7.6e-17 90.5 60 66.7
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 1.0e-16 90.1 60 70.0
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 1.3e-16 89.7 56 67.9
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 1.3e-16 89.7 60 70.0
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 2.2e-16 89.0 60 70.0
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 3.8e-16 88.2 56 66.1
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 4.9e-16 87.8 56 67.9
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 4.9e-16 87.8 55 70.9
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 6.5e-16 87.4 61 68.9
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 9.3e-15 83.6 60 66.7
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.6e-14 82.8 62 62.9
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 6.0e-14 80.9 52 67.3
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 1.0e-13 80.1 53 66.0
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 5.7e-12 74.3 38 81.6
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 1.6e-11 72.8 38 84.2
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 5.3e-10 67.8 38 73.7
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 3.4e-09 65.1 62 54.8
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 4.5e-09 64.7 61 54.1
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 4.5e-09 64.7 45 60.0
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 7.6e-09 63.9 41 61.0


User provided reference genes

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