Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13447 Sapria himalayana HOM05D003460 ORTHO05D004277 0.0e+00 1796.2 919 100.0
Ciclev10018441m.g Citrus clementina HOM05D003460 ORTHO05D004277 2.8e-270 935.6 878 58.2
Potri.002G159900 Populus trichocarpa HOM05D003460 ORTHO05D004277 3.4e-268 928.7 874 57.8
Sabra02G0126900 Salix brachista HOM05D003460 ORTHO05D004277 2.9e-267 925.6 873 57.3
Potri.014G084500 Populus trichocarpa HOM05D003460 ORTHO05D004277 3.8e-267 925.2 877 57.4
FAN10G1682 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.4e-266 923.3 872 56.7
Sabra14G0061300 Salix brachista HOM05D003460 ORTHO05D004277 1.9e-266 922.9 874 57.4
FAN10G2005 Fragaria x ananassa HOM05D003460 ORTHO05D004277 5.5e-266 921.4 872 56.5
FAN01G0910 Fragaria x ananassa HOM05D003460 ORTHO05D004277 2.7e-265 919.1 872 56.0
FAN06G0746 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.0e-264 917.1 873 56.1
FvH4_7g14270 Fragaria vesca HOM05D003460 ORTHO05D004277 1.4e-264 916.8 873 56.1
Manes.05G034300 Manihot esculenta HOM05D003460 ORTHO05D004277 1.5e-263 913.3 875 56.2
FAN03G0059 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.3e-262 910.2 873 56.4
TWI59G0279 Tripterygium wilfordii HOM05D003460 ORTHO05D004277 7.7e-260 901.0 879 56.2
Haze_15503 Corylus avellana HOM05D003460 ORTHO05D004277 1.9e-258 896.3 878 55.7
RcHm_v2.0_Chr1g0355261 Rosa chinensis HOM05D003460 ORTHO05D004277 7.2e-258 894.4 874 55.3
CiPaw.01G061200 Carya illinoinensis HOM05D003460 ORTHO05D004277 1.2e-257 893.6 875 55.9
Manes.01G256801 Manihot esculenta HOM05D003460 ORTHO05D004277 3.6e-257 892.1 873 56.0
FAN06G4334 Fragaria x ananassa HOM05D003460 ORTHO05D004277 8.0e-257 891.0 873 55.1
Prupe.2G170500 Prunus persica HOM05D003460 ORTHO05D004277 8.8e-256 887.5 881 55.1
QL08p048825 Quercus lobata HOM05D003460 ORTHO05D004277 9.7e-255 884.0 877 55.2
Duzib133G1367 Durio zibethinus HOM05D003460 ORTHO05D004277 8.2e-254 880.9 876 54.7
MD07G1137100 Malus domestica HOM05D003460 ORTHO05D004277 1.1e-253 880.6 880 54.3
MD01G1060600 Malus domestica HOM05D003460 ORTHO05D004277 1.4e-253 880.2 879 54.4
Duzib268G1202 Durio zibethinus HOM05D003460 ORTHO05D004277 4.1e-253 878.6 877 54.4
Actinidia20904 Actinidia chinensis HOM05D003460 ORTHO05D004277 3.5e-252 875.5 878 54.7
CsaV3_3G008910 Cucumis sativus L. HOM05D003460 ORTHO05D004277 1.3e-251 873.6 871 54.5
ClCG05G001530 Citrullus lanatus HOM05D003460 ORTHO05D004277 2.2e-251 872.8 874 54.8
Gohir.D11G093200 Gossypium hirsutum HOM05D003460 ORTHO05D004277 3.8e-251 872.1 878 54.0
MELO3C006111.2 Cucumis melo HOM05D003460 ORTHO05D004277 6.5e-251 871.3 870 54.6
Gorai.007G099500 Gossypium raimondii HOM05D003460 ORTHO05D004277 3.2e-250 869.0 878 54.0
Actinidia10010 Actinidia chinensis HOM05D003460 ORTHO05D004277 7.2e-250 867.8 876 54.3
Gohir.A11G088900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 7.2e-250 867.8 878 54.2
Nitab4.5_0000885g0020 Nicotiana tabacum HOM05D003460 ORTHO05D004277 9.4e-250 867.5 881 52.4
Nitab4.5_0000583g0090 Nicotiana tabacum HOM05D003460 ORTHO05D004277 1.6e-249 866.7 881 52.6
Thecc.01G359000 Theobroma cacao HOM05D003460 ORTHO05D004277 3.6e-249 865.5 878 53.5
Ca_23633_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 6.1e-249 864.8 879 54.3
Lj3g0003387 Lotus japonicus HOM05D003460 ORTHO05D004277 1.0e-248 864.0 879 54.4
Dinv32483 Davidia involucrata HOM05D003460 ORTHO05D004277 3.0e-248 862.4 872 53.9
Sed0006269 Sechium edule HOM05D003460 ORTHO05D004277 7.5e-247 857.8 871 53.8
EL10Ac1g00416 Beta vulgaris HOM05D003460 ORTHO05D004277 1.3e-246 857.1 879 53.1
CSS0010662 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 1.1e-245 854.0 879 53.9
Gohir.D12G111900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 7.0e-245 851.3 877 53.0
Rhsim07G0015100 Rhododendron simsii HOM05D003460 ORTHO05D004277 9.1e-245 850.9 904 52.9
Lj1g0005367 Lotus japonicus HOM05D003460 ORTHO05D004277 2.7e-244 849.4 929 51.2
TAR629G2967 Trochodendron aralioides HOM05D003460 ORTHO05D004277 7.7e-244 847.8 878 53.3
Lalb_Chr17g0339611 Lupinus albus HOM05D003460 ORTHO05D004277 1.0e-243 847.4 881 54.3
Gorai.008G121300 Gossypium raimondii HOM05D003460 ORTHO05D004277 1.3e-243 847.0 877 52.9
Phvul.008G142400 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 2.3e-243 846.3 875 53.4
CSS0048858 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 2.9e-243 845.9 879 53.2
CANSAT56G1950 Cannabis sativa HOM05D003460 ORTHO05D004277 5.0e-243 845.1 880 52.5
VMungo1383G3436 Vigna mungo HOM05D003460 ORTHO05D004277 6.5e-243 844.7 874 53.3
Cfa003927 Carpinus fangiana HOM05D003460 ORTHO05D004277 1.2e-241 840.5 873 54.0
Gohir.A12G108900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 1.2e-241 840.5 875 52.2
arahy.Tifrunner.gnm1.ann1.H3LZVP Arachis hypogaea HOM05D003460 ORTHO05D004277 2.1e-241 839.7 882 52.9
Glyma.07G070700 Glycine max HOM05D003460 ORTHO05D004277 3.6e-241 839.0 878 52.8
arahy.Tifrunner.gnm1.ann1.T9PB4Q Arachis hypogaea HOM05D003460 ORTHO05D004277 4.7e-241 838.6 882 52.8
AUR62022565 Chenopodium quinoa HOM05D003460 ORTHO05D004277 6.1e-241 838.2 879 51.6
TAR636G2440 Trochodendron aralioides HOM05D003460 ORTHO05D004277 1.4e-240 837.0 875 52.8
Sed0017726 Sechium edule HOM05D003460 ORTHO05D004277 3.0e-240 835.9 875 53.5
AUR62004357 Chenopodium quinoa HOM05D003460 ORTHO05D004277 6.8e-240 834.7 880 51.4
Glyma.09G259400 Glycine max HOM05D003460 ORTHO05D004277 8.8e-240 834.3 878 53.2
CAN.G78.79 Capsicum annuum HOM05D003460 ORTHO05D004277 1.5e-239 833.6 874 51.0
Glyma.03G009200 Glycine max HOM05D003460 ORTHO05D004277 3.4e-239 832.4 878 52.7
Nn1g01533 Nelumbo nucifera HOM05D003460 ORTHO05D004277 9.8e-239 830.9 878 52.4
Lalb_Chr04g0256941 Lupinus albus HOM05D003460 ORTHO05D004277 2.2e-238 829.7 880 53.0
Solyc01g094620.3 Solanum lycopersicum HOM05D003460 ORTHO05D004277 2.2e-238 829.7 880 51.2
Oeu052946.1 Olea europaea HOM05D003460 ORTHO05D004277 3.7e-238 828.9 882 50.9
Glyma.18G232900 Glycine max HOM05D003460 ORTHO05D004277 6.3e-238 828.2 878 52.5
Medtr8g030800 Medicago truncatula HOM05D003460 ORTHO05D004277 1.8e-237 826.6 877 51.5
Peaxi162Scf00020g00327 Petunia axillaris HOM05D003460 ORTHO05D004277 4.1e-237 825.5 877 51.2
vmacro13290 Vaccinium macrocarpon HOM05D003460 ORTHO05D004277 4.1e-237 825.5 877 52.9
Sopen01g038430 Solanum pennellii HOM05D003460 ORTHO05D004277 5.4e-237 825.1 879 51.1
Psat3g108400 Pisum sativum HOM05D003460 ORTHO05D004277 1.6e-236 823.5 878 52.4
Sc23g0002910 Simmondsia chinensis HOM05D003460 ORTHO05D004277 3.5e-236 822.4 876 53.1
Ca_07919_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 1.3e-235 820.5 878 52.1
Nn6g33423 Nelumbo nucifera HOM05D003460 ORTHO05D004277 1.3e-235 820.5 878 52.1
Eucgr.E00136 Eucalyptus grandis HOM05D003460 ORTHO05D004277 8.6e-235 817.8 883 51.0
Lj7C512T7 Lonicera japonica HOM05D003460 ORTHO05D004277 1.1e-234 817.4 871 53.0
Phvul.010G099000 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 1.9e-234 816.6 879 52.1
Lalb_Chr10g0096951 Lupinus albus HOM05D003460 ORTHO05D004277 2.5e-234 816.2 842 53.7
Medtr7g077700 Medicago truncatula HOM05D003460 ORTHO05D004277 2.5e-234 816.2 880 51.6
CiPaw.02G030700 Carya illinoinensis HOM05D003460 ORTHO05D004277 7.3e-234 814.7 876 52.1
Ah.05g180610 Amaranthus hybridus HOM05D003460 ORTHO05D004277 1.2e-233 813.9 879 51.3
DCAR_008608 Daucus carota HOM05D003460 ORTHO05D004277 6.1e-233 811.6 877 50.5
Hund27274 Selenicereus undatus HOM05D003460 ORTHO05D004277 1.4e-232 810.4 878 52.3
TPR.G8692 Trifolium pratense HOM05D003460 ORTHO05D004277 2.3e-232 809.7 837 52.9
Sp6g00490 Schrenkiella parvula HOM05D003460 ORTHO05D004277 9.8e-231 804.3 889 50.8
Carub.0006s3681 Capsella rubella HOM05D003460 ORTHO05D004277 1.8e-229 800.0 889 50.7
VMungo0331G1375 Vigna mungo HOM05D003460 ORTHO05D004277 1.8e-229 800.0 879 51.4
AT4G00450 Arabidopsis thaliana HOM05D003460 ORTHO05D004277 3.2e-229 799.3 889 50.5
CARHR248550 Cardamine hirsuta HOM05D003460 ORTHO05D004277 2.0e-228 796.6 889 50.4
BcaC01g06879 Brassica carinata HOM05D003460 ORTHO05D004277 3.5e-228 795.8 887 51.1
C03p39210 Brassica napus HOM05D003460 ORTHO05D004277 3.5e-228 795.8 887 51.1
ECA240G3092 Erigeron canadensis HOM05D003460 ORTHO05D004277 3.5e-228 795.8 869 50.4
A03p32180 Brassica napus HOM05D003460 ORTHO05D004277 1.0e-227 794.3 887 51.0
BraA03t12388Z Brassica rapa HOM05D003460 ORTHO05D004277 1.0e-227 794.3 887 51.0
Cc02_g38020 Coffea canephora HOM05D003460 ORTHO05D004277 1.7e-227 793.5 934 48.6
BolC3t16192H Brassica oleracea HOM05D003460 ORTHO05D004277 2.3e-227 793.1 887 51.0
Thhalv10028357m.g Eutrema salsugineum HOM05D003460 ORTHO05D004277 1.5e-226 790.4 889 50.3
Aa31LG5G530 Aethionema arabicum HOM05D003460 ORTHO05D004277 1.2e-225 787.3 883 49.2
AL6G53010 Arabidopsis lyrata HOM05D003460 ORTHO05D004277 2.1e-225 786.6 889 50.1
PSO782G4956 Papaver somniferum HOM05D003460 ORTHO05D004277 1.5e-223 780.4 946 47.5
PSO063G5861 Papaver somniferum HOM05D003460 ORTHO05D004277 9.8e-223 777.7 948 47.5
Aqoxy7G00308 Aquilegia oxysepala HOM05D003460 ORTHO05D004277 1.3e-222 777.3 877 50.4
BcaB01g02251 Brassica carinata HOM05D003460 ORTHO05D004277 1.3e-222 777.3 889 50.1
GSVIVG01026933001 Vitis vinifera HOM05D003460 ORTHO05D004277 1.3e-222 777.3 863 50.5
HanXRQChr13g0426551 Helianthus annuus HOM05D003460 ORTHO05D004277 2.9e-222 776.2 873 49.4
BcaB01g02164 Brassica carinata HOM05D003460 ORTHO05D004277 6.4e-222 775.0 886 50.1
Atru.chr5.497 Acer truncatum HOM05D003460 ORTHO05D004277 1.1e-221 774.2 725 57.4
PGR042G0360 Punica granatum HOM05D003460 ORTHO05D004277 7.8e-220 768.1 880 49.9
COL.COLO4_12713 Corchorus olitorius HOM05D003460 ORTHO05D004277 4.3e-218 762.3 875 49.3
HanXRQChr03g0093461 Helianthus annuus HOM05D003460 ORTHO05D004277 5.6e-218 761.9 867 49.0
A09p00470 Brassica napus HOM05D003460 ORTHO05D004277 1.2e-217 760.8 886 50.2
Migut.N01446 Erythranthe guttata HOM05D003460 ORTHO05D004277 1.2e-217 760.8 877 48.8
Psat4g205160 Pisum sativum HOM05D003460 ORTHO05D004277 2.1e-217 760.0 872 50.1
THA.LOC104825837 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 1.8e-216 756.9 882 50.1
BraA09t35713Z Brassica rapa HOM05D003460 ORTHO05D004277 3.1e-216 756.1 886 50.0
MSTRG.17267 Avicennia marina HOM05D003460 ORTHO05D004277 6.8e-216 755.0 890 48.1
BolC9t52974H Brassica oleracea HOM05D003460 ORTHO05D004277 8.9e-216 754.6 884 50.1
SGA_v2.0_scaffold11G05665 Striga asiatica HOM05D003460 ORTHO05D004277 1.2e-215 754.2 877 48.5
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 3.4e-215 752.7 877 48.5
BcaC04g24169 Brassica carinata HOM05D003460 ORTHO05D004277 5.8e-215 751.9 884 49.9
C09p00390 Brassica napus HOM05D003460 ORTHO05D004277 5.8e-215 751.9 884 49.9
SGA_v2.0_scaffold43G16414 Striga asiatica HOM05D003460 ORTHO05D004277 1.3e-214 750.7 878 47.9
SalBow3G0963 Salvia bowleyana HOM05D003460 ORTHO05D004277 6.4e-214 748.4 881 47.0
Aa31LG1G11050 Aethionema arabicum HOM05D003460 ORTHO05D004277 1.9e-213 746.9 869 49.7
ATR0680G344 Amborella trichopoda HOM05D003460 ORTHO05D004277 5.4e-213 745.3 881 48.2
Migut.O00143 Erythranthe guttata HOM05D003460 ORTHO05D004277 3.9e-211 739.2 875 47.4
THA.LOC104801439 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 1.1e-210 737.6 881 49.3
Lsat_1_v5_gn_3_137161 Lactuca sativa HOM05D003460 ORTHO05D004277 1.5e-210 737.3 866 48.7
Dinv43815 Davidia involucrata HOM05D003460 ORTHO05D004277 2.9e-206 723.0 669 58.0
unitig_61.g26386 Utricularia gibba HOM05D003460 ORTHO05D004277 2.6e-199 699.9 876 44.3
unitig_0.g1263 Utricularia gibba HOM05D003460 ORTHO05D004277 5.8e-199 698.7 878 44.5
CDE04G2266 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 1.3e-198 697.6 932 43.9
TPR.G37789 Trifolium pratense HOM05D003460 ORTHO05D004277 7.8e-196 688.3 884 46.6
Zm00001eb404370 Zea mays HOM05D003460 ORTHO05D004277 7.6e-175 618.6 879 43.8
Zm00001eb000520 Zea mays HOM05D003460 ORTHO05D004277 6.5e-174 615.5 881 43.2
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 1.1e-170 604.7 887 41.3
SEGI_03490 Sequoiadendron giganteum HOM05D003460 ORTHO05D004277 9.7e-162 575.1 909 39.3
HPP92_025394 Vanilla planifolia HOM05D003460 ORTHO05D004277 1.0e-142 511.9 602 47.8
Mapoly0018s0023 Marchantia polymorpha HOM05D003460 ORTHO05D004277 3.7e-137 493.4 892 36.7
MapolyY_A0045 Marchantia polymorpha HOM05D003460 ORTHO05D004277 4.0e-131 473.4 901 36.1
Pp3c24_11620 Physcomitrium patens HOM05D003460 ORTHO05D004277 1.7e-126 458.0 902 35.0
Pp3c8_17600 Physcomitrium patens HOM05D003460 ORTHO05D004277 1.9e-125 454.5 901 35.2
SMO147G0395 Selaginella moellendorffii HOM05D003460 ORTHO05D004277 3.8e-118 430.3 875 34.3
AagrBONN_evm.TU.Sc2ySwM_344.2570 Anthoceros agrestis HOM05D003460 ORTHO05D004277 1.3e-102 378.6 894 32.1
Os10g0550100 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 1.0e-70 272.7 441 39.2
Psat4g081160 Pisum sativum HOM05D001550 ORTHO05D001611 2.5e-45 188.3 302 39.7
Dinv43816 Davidia involucrata HOM05D003460 ORTHO05D004277 5.7e-45 187.2 193 51.8
CBR_g44444 Chara braunii HOM05D003460 ORTHO05D004277 1.3e-44 186.0 945 25.5
Os07g0648300 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 2.3e-38 165.2 248 40.3
Psat0ss3759g0200 Pisum sativum HOM05D003460 ORTHO05D007199 4.1e-35 154.5 273 40.7
TPR.G15040 Trifolium pratense HOM05D003460 ORTHO05D004277 9.1e-35 153.3 302 35.1
GSVIVG01026827001 Vitis vinifera HOM05D003460 ORTHO05D004277 6.1e-23 114.0 249 37.8
Psat0s3269g0120 Pisum sativum HOM05D000070 ORTHO05D006683 1.2e-21 109.8 116 53.4
HPP92_025393 Vanilla planifolia HOM05D003460 ORTHO05D004277 1.4e-19 102.8 120 44.2
Psat6g008040 Pisum sativum HOM05D003460 ORTHO05D019351 2.9e-17 95.1 105 50.5
Atru.chr5.496 Acer truncatum HOM05D003460 ORTHO05D004277 1.6e-10 72.8 69 56.5
VMungo1215G0982 Vigna mungo HOM05D003460 ORTHO05D004277 4.2e-08 64.7 52 53.8
CBR_g34865 Chara braunii HOM05D003460 ORTHO05D004277 6.1e-07 60.8 90 41.1


User provided reference genes

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