Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13445 Sapria himalayana HOM05D003460 ORTHO05D004277 6.1e-73 277.3 135 100.0
Manes.05G034300 Manihot esculenta HOM05D003460 ORTHO05D004277 1.1e-29 133.7 145 51.7
Atru.chr5.495 Acer truncatum HOM05D003460 ORTHO05D004277 4.2e-29 131.7 146 54.1
Potri.014G084500 Populus trichocarpa HOM05D003460 ORTHO05D004277 1.6e-28 129.8 146 53.4
Medtr8g030800 Medicago truncatula HOM05D003460 ORTHO05D004277 4.6e-28 128.3 147 49.0
VMungo1383G3436 Vigna mungo HOM05D003460 ORTHO05D004277 1.7e-27 126.3 146 50.0
Psat4g205160 Pisum sativum HOM05D003460 ORTHO05D004277 3.9e-27 125.2 147 49.0
Glyma.07G070700 Glycine max HOM05D003460 ORTHO05D004277 8.7e-27 124.0 144 47.9
Lalb_Chr04g0256941 Lupinus albus HOM05D003460 ORTHO05D004277 1.1e-26 123.6 147 49.0
TWI59G0279 Tripterygium wilfordii HOM05D003460 ORTHO05D004277 1.1e-26 123.6 146 50.0
Ciclev10018441m.g Citrus clementina HOM05D003460 ORTHO05D004277 1.5e-26 123.2 146 46.6
Nitab4.5_0000583g0090 Nicotiana tabacum HOM05D003460 ORTHO05D004277 4.3e-26 121.7 148 47.3
EL10Ac1g00416 Beta vulgaris HOM05D003460 ORTHO05D004277 7.3e-26 120.9 147 51.0
Carub.0006s3681 Capsella rubella HOM05D003460 ORTHO05D004277 7.3e-26 120.9 148 53.4
Dinv43815 Davidia involucrata HOM05D003460 ORTHO05D004277 9.6e-26 120.6 147 49.7
Duzib133G1367 Durio zibethinus HOM05D003460 ORTHO05D004277 1.3e-25 120.2 148 46.6
Ca_23633_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 1.6e-25 119.8 140 50.0
Sabra14G0061300 Salix brachista HOM05D003460 ORTHO05D004277 1.6e-25 119.8 149 48.3
Thecc.01G359000 Theobroma cacao HOM05D003460 ORTHO05D004277 1.6e-25 119.8 151 46.4
Haze_15503 Corylus avellana HOM05D003460 ORTHO05D004277 2.1e-25 119.4 151 47.0
CAN.G78.79 Capsicum annuum HOM05D003460 ORTHO05D004277 2.8e-25 119.0 148 45.9
Phvul.010G099000 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 2.8e-25 119.0 146 45.2
AUR62004357 Chenopodium quinoa HOM05D003460 ORTHO05D004277 3.6e-25 118.6 149 49.0
AUR62022565 Chenopodium quinoa HOM05D003460 ORTHO05D004277 3.6e-25 118.6 149 48.3
Lj3g0003387 Lotus japonicus HOM05D003460 ORTHO05D004277 3.6e-25 118.6 145 48.3
Lalb_Chr10g0096951 Lupinus albus HOM05D003460 ORTHO05D004277 3.6e-25 118.6 144 46.5
TPR.G8692 Trifolium pratense HOM05D003460 ORTHO05D004277 4.8e-25 118.2 142 47.9
Ah.05g180610 Amaranthus hybridus HOM05D003460 ORTHO05D004277 6.2e-25 117.9 147 45.6
Cfa003927 Carpinus fangiana HOM05D003460 ORTHO05D004277 6.2e-25 117.9 151 46.4
COL.COLO4_12713 Corchorus olitorius HOM05D003460 ORTHO05D004277 6.2e-25 117.9 148 47.3
Peaxi162Scf00020g00327 Petunia axillaris HOM05D003460 ORTHO05D004277 6.2e-25 117.9 147 46.3
ClCG05G001530 Citrullus lanatus HOM05D003460 ORTHO05D004277 8.1e-25 117.5 148 48.6
Sed0017726 Sechium edule HOM05D003460 ORTHO05D004277 8.1e-25 117.5 139 49.6
BcaC04g24169 Brassica carinata HOM05D003460 ORTHO05D004277 1.1e-24 117.1 147 51.0
C09p00390 Brassica napus HOM05D003460 ORTHO05D004277 1.1e-24 117.1 147 51.0
BolC9t52974H Brassica oleracea HOM05D003460 ORTHO05D004277 1.1e-24 117.1 147 51.0
A03p32180 Brassica napus HOM05D003460 ORTHO05D004277 1.4e-24 116.7 150 48.0
BraA03t12388Z Brassica rapa HOM05D003460 ORTHO05D004277 1.4e-24 116.7 150 48.0
A09p00470 Brassica napus HOM05D003460 ORTHO05D004277 2.4e-24 115.9 150 52.7
CARHR248550 Cardamine hirsuta HOM05D003460 ORTHO05D004277 2.4e-24 115.9 148 50.0
Duzib268G1202 Durio zibethinus HOM05D003460 ORTHO05D004277 2.4e-24 115.9 147 46.3
Glyma.09G259400 Glycine max HOM05D003460 ORTHO05D004277 2.4e-24 115.9 145 46.2
Solyc01g094620.3 Solanum lycopersicum HOM05D003460 ORTHO05D004277 2.4e-24 115.9 148 48.0
Sopen01g038430 Solanum pennellii HOM05D003460 ORTHO05D004277 2.4e-24 115.9 148 48.0
BcaB01g02164 Brassica carinata HOM05D003460 ORTHO05D004277 3.1e-24 115.5 149 51.7
BraA09t35713Z Brassica rapa HOM05D003460 ORTHO05D004277 3.1e-24 115.5 150 52.7
Cc02_g38020 Coffea canephora HOM05D003460 ORTHO05D004277 3.1e-24 115.5 147 44.9
Glyma.18G232900 Glycine max HOM05D003460 ORTHO05D004277 3.1e-24 115.5 145 46.9
Hund27274 Selenicereus undatus HOM05D003460 ORTHO05D004277 3.1e-24 115.5 148 45.9
Nitab4.5_0000885g0020 Nicotiana tabacum HOM05D003460 ORTHO05D004277 4.0e-24 115.2 142 47.2
VMungo0331G1375 Vigna mungo HOM05D003460 ORTHO05D004277 4.0e-24 115.2 153 40.5
GSVIVG01026933001 Vitis vinifera HOM05D003460 ORTHO05D004277 4.0e-24 115.2 153 43.1
BcaC01g06879 Brassica carinata HOM05D003460 ORTHO05D004277 5.3e-24 114.8 148 51.4
C03p39210 Brassica napus HOM05D003460 ORTHO05D004277 5.3e-24 114.8 148 51.4
BolC3t16192H Brassica oleracea HOM05D003460 ORTHO05D004277 5.3e-24 114.8 148 51.4
Sp6g00490 Schrenkiella parvula HOM05D003460 ORTHO05D004277 5.3e-24 114.8 151 50.3
Ca_07919_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 6.9e-24 114.4 145 47.6
TPR.G37789 Trifolium pratense HOM05D003460 ORTHO05D004277 6.9e-24 114.4 142 48.6
CANSAT56G1950 Cannabis sativa HOM05D003460 ORTHO05D004277 9.0e-24 114.0 148 45.9
Glyma.03G009200 Glycine max HOM05D003460 ORTHO05D004277 9.0e-24 114.0 146 45.2
Manes.01G256801 Manihot esculenta HOM05D003460 ORTHO05D004277 9.0e-24 114.0 135 48.1
Lj1g0005367 Lotus japonicus HOM05D003460 ORTHO05D004277 1.2e-23 113.6 142 46.5
Rhsim07G0015100 Rhododendron simsii HOM05D003460 ORTHO05D004277 1.2e-23 113.6 148 46.6
AL6G53010 Arabidopsis lyrata HOM05D003460 ORTHO05D004277 1.5e-23 113.2 150 50.7
arahy.Tifrunner.gnm1.ann1.T9PB4Q Arachis hypogaea HOM05D003460 ORTHO05D004277 1.5e-23 113.2 146 47.3
Lalb_Chr17g0339611 Lupinus albus HOM05D003460 ORTHO05D004277 1.5e-23 113.2 147 46.3
Potri.002G159900 Populus trichocarpa HOM05D003460 ORTHO05D004277 1.5e-23 113.2 149 45.0
QL08p048825 Quercus lobata HOM05D003460 ORTHO05D004277 1.5e-23 113.2 147 48.3
arahy.Tifrunner.gnm1.ann1.H3LZVP Arachis hypogaea HOM05D003460 ORTHO05D004277 2.0e-23 112.8 141 46.8
Oeu052946.1 Olea europaea HOM05D003460 ORTHO05D004277 2.0e-23 112.8 147 45.6
Thhalv10028357m.g Eutrema salsugineum HOM05D003460 ORTHO05D004277 2.6e-23 112.5 150 53.3
MD01G1060600 Malus domestica HOM05D003460 ORTHO05D004277 2.6e-23 112.5 150 46.7
MD07G1137100 Malus domestica HOM05D003460 ORTHO05D004277 2.6e-23 112.5 148 48.0
Sed0006269 Sechium edule HOM05D003460 ORTHO05D004277 2.6e-23 112.5 147 44.9
vmacro13290 Vaccinium macrocarpon HOM05D003460 ORTHO05D004277 2.6e-23 112.5 147 45.6
HanXRQChr03g0093461 Helianthus annuus HOM05D003460 ORTHO05D004277 4.5e-23 111.7 140 45.7
AT4G00450 Arabidopsis thaliana HOM05D003460 ORTHO05D004277 5.8e-23 111.3 150 49.3
BcaB01g02251 Brassica carinata HOM05D003460 ORTHO05D004277 5.8e-23 111.3 154 47.4
Gohir.A12G108900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 5.8e-23 111.3 146 44.5
FAN10G2005 Fragaria x ananassa HOM05D003460 ORTHO05D004277 7.6e-23 110.9 148 43.9
CsaV3_3G008910 Cucumis sativus L. HOM05D003460 ORTHO05D004277 9.9e-23 110.5 148 47.3
HanXRQChr13g0426551 Helianthus annuus HOM05D003460 ORTHO05D004277 9.9e-23 110.5 148 42.6
CSS0010662 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 1.3e-22 110.2 150 44.7
Actinidia20904 Actinidia chinensis HOM05D003460 ORTHO05D004277 1.7e-22 109.8 147 46.3
FAN10G1682 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.7e-22 109.8 148 43.2
RcHm_v2.0_Chr1g0355261 Rosa chinensis HOM05D003460 ORTHO05D004277 1.7e-22 109.8 148 42.6
Eucgr.E00136 Eucalyptus grandis HOM05D003460 ORTHO05D004277 2.2e-22 109.4 147 45.6
PGR042G0360 Punica granatum HOM05D003460 ORTHO05D004277 2.2e-22 109.4 143 44.1
FvH4_7g14270 Fragaria vesca HOM05D003460 ORTHO05D004277 2.9e-22 109.0 148 43.2
FAN06G0746 Fragaria x ananassa HOM05D003460 ORTHO05D004277 2.9e-22 109.0 148 43.2
FAN06G4334 Fragaria x ananassa HOM05D003460 ORTHO05D004277 2.9e-22 109.0 148 43.2
Gohir.D12G111900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 3.8e-22 108.6 146 43.8
Gorai.008G121300 Gossypium raimondii HOM05D003460 ORTHO05D004277 3.8e-22 108.6 146 43.8
Gohir.A11G088900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 4.9e-22 108.2 146 44.5
FAN03G0059 Fragaria x ananassa HOM05D003460 ORTHO05D004277 6.4e-22 107.8 148 43.2
Psat3g108400 Pisum sativum HOM05D003460 ORTHO05D004277 6.4e-22 107.8 146 47.3
THA.LOC104825837 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 6.4e-22 107.8 152 46.7
THA.LOC104827725 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 6.4e-22 107.8 152 46.7
Sabra02G0126900 Salix brachista HOM05D003460 ORTHO05D004277 8.4e-22 107.5 149 43.6
SalBow3G0963 Salvia bowleyana HOM05D003460 ORTHO05D004277 8.4e-22 107.5 146 45.2
FAN01G0910 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.1e-21 107.1 147 42.9
Gohir.D11G093200 Gossypium hirsutum HOM05D003460 ORTHO05D004277 1.4e-21 106.7 146 44.5
Gorai.007G099500 Gossypium raimondii HOM05D003460 ORTHO05D004277 1.4e-21 106.7 146 44.5
Lj7C512T7 Lonicera japonica HOM05D003460 ORTHO05D004277 1.9e-21 106.3 154 44.2
unitig_0.g1263 Utricularia gibba HOM05D003460 ORTHO05D004277 1.9e-21 106.3 144 44.4
Actinidia10010 Actinidia chinensis HOM05D003460 ORTHO05D004277 2.4e-21 105.9 155 43.2
MSTRG.17267 Avicennia marina HOM05D003460 ORTHO05D004277 2.4e-21 105.9 148 43.9
Aa31LG5G530 Aethionema arabicum HOM05D003460 ORTHO05D004277 4.2e-21 105.1 150 46.0
Lsat_1_v5_gn_3_137161 Lactuca sativa HOM05D003460 ORTHO05D004277 1.2e-20 103.6 150 40.0
CiPaw.02G030700 Carya illinoinensis HOM05D003460 ORTHO05D004277 1.6e-20 103.2 144 44.4
TAR629G2967 Trochodendron aralioides HOM05D003460 ORTHO05D004277 3.5e-20 102.1 149 47.0
ECA240G3092 Erigeron canadensis HOM05D003460 ORTHO05D004277 4.6e-20 101.7 146 39.7
Medtr7g077700 Medicago truncatula HOM05D003460 ORTHO05D004277 4.6e-20 101.7 145 45.5
Psat4g193320 Pisum sativum HOM05D003460 ORTHO05D004277 6.0e-20 101.3 124 46.0
Zm00001eb404370 Zea mays HOM05D003460 ORTHO05D004277 6.0e-20 101.3 147 40.8
Nn1g01533 Nelumbo nucifera HOM05D003460 ORTHO05D004277 7.9e-20 100.9 152 41.4
SEGI_03490 Sequoiadendron giganteum HOM05D003460 ORTHO05D004277 7.9e-20 100.9 147 41.5
TAR636G2440 Trochodendron aralioides HOM05D003460 ORTHO05D004277 7.9e-20 100.9 150 44.7
Nn6g33423 Nelumbo nucifera HOM05D003460 ORTHO05D004277 1.8e-19 99.8 140 44.3
Aqoxy7G00308 Aquilegia oxysepala HOM05D003460 ORTHO05D004277 2.3e-19 99.4 142 42.3
PGSC0003DMG400000171 Solanum tuberosum HOM05D003460 ORTHO05D004277 3.0e-19 99.0 122 48.4
Zm00001eb000520 Zea mays HOM05D003460 ORTHO05D004277 6.7e-19 97.8 148 40.5
Os07g0648300 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 8.7e-19 97.4 143 39.9
SGA_v2.0_scaffold43G16414 Striga asiatica HOM05D003460 ORTHO05D004277 8.7e-19 97.4 139 42.4
Aa31LG1G11050 Aethionema arabicum HOM05D003460 ORTHO05D004277 1.1e-18 97.1 138 45.7
SGA_v2.0_scaffold11G05665 Striga asiatica HOM05D003460 ORTHO05D004277 1.1e-18 97.1 147 40.8
Os10g0550100 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 1.9e-18 96.3 140 42.1
DCAR_008608 Daucus carota HOM05D003460 ORTHO05D004277 4.3e-18 95.1 150 42.7
ATR0680G344 Amborella trichopoda HOM05D003460 ORTHO05D004277 3.6e-17 92.0 149 40.3
MapolyY_A0045 Marchantia polymorpha HOM05D003460 ORTHO05D004277 8.1e-17 90.9 148 38.5
CSS0048858 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 1.8e-16 89.7 150 39.3
HPP92_025393 Vanilla planifolia HOM05D003460 ORTHO05D004277 1.8e-16 89.7 139 38.1
THA.LOC104801439 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 3.1e-16 89.0 142 37.3
Migut.O00143 Erythranthe guttata HOM05D003460 ORTHO05D004277 9.9e-15 84.0 135 37.0
MELO3C006111.2 Cucumis melo HOM05D003460 ORTHO05D004277 1.3e-14 83.6 132 43.2
Pp3c24_11620 Physcomitrium patens HOM05D003460 ORTHO05D004277 1.3e-14 83.6 144 40.3
Sc23g0002910 Simmondsia chinensis HOM05D003460 ORTHO05D004277 2.2e-14 82.8 141 41.1
Pp3c8_17600 Physcomitrium patens HOM05D003460 ORTHO05D004277 3.8e-14 82.0 144 38.9
SMO147G0395 Selaginella moellendorffii HOM05D003460 ORTHO05D004277 6.4e-14 81.3 141 37.6
Mapoly0018s0023 Marchantia polymorpha HOM05D003460 ORTHO05D004277 1.4e-13 80.1 144 34.7
CDE04G2266 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 1.9e-13 79.7 143 37.1
Migut.N01446 Erythranthe guttata HOM05D003460 ORTHO05D004277 3.2e-13 79.0 154 37.7
PSO782G4956 Papaver somniferum HOM05D003460 ORTHO05D004277 3.2e-13 79.0 190 30.0
PSO063G5861 Papaver somniferum HOM05D003460 ORTHO05D004277 9.3e-13 77.4 190 32.1
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 7.9e-12 74.3 127 37.8
Dinv43814 Davidia involucrata HOM05D003460 ORTHO05D013366 4.8e-09 65.1 54 59.3
TPR.G17917 Trifolium pratense HOM05D003460 ORTHO05D004277 1.4e-08 63.5 67 49.3
CBR_g44444 Chara braunii HOM05D003460 ORTHO05D004277 2.9e-06 55.8 81 42.0
AagrBONN_evm.TU.Sc2ySwM_344.2570 Anthoceros agrestis HOM05D003460 ORTHO05D004277 3.8e-06 55.5 61 39.3


User provided reference genes

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