Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13440 Sapria himalayana HOM05D003351 ORTHO05D003806 5.3e-143 511.1 282 100.0
QL08p048991 Quercus lobata HOM05D003351 ORTHO05D003806 9.3e-39 164.9 234 42.7
Sed0024794 Sechium edule HOM05D003351 ORTHO05D003806 2.1e-38 163.7 234 43.2
Sed0019127 Sechium edule HOM05D003351 ORTHO05D003806 2.7e-38 163.3 234 43.2
Nitab4.5_0008002g0030 Nicotiana tabacum HOM05D003351 ORTHO05D003806 3.5e-38 162.9 234 43.2
GSVIVG01026913001 Vitis vinifera HOM05D003351 ORTHO05D003806 3.5e-38 162.9 221 43.9
Nitab4.5_0005277g0030 Nicotiana tabacum HOM05D003351 ORTHO05D003806 6.0e-38 162.2 244 42.2
Solyc01g094530.4 Solanum lycopersicum HOM05D003351 ORTHO05D003806 1.0e-37 161.4 242 42.6
Sopen01g038340 Solanum pennellii HOM05D003351 ORTHO05D003806 1.0e-37 161.4 242 42.6
PGSC0003DMG400000166 Solanum tuberosum HOM05D003351 ORTHO05D003806 1.0e-37 161.4 242 41.7
AL1G10650 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 1.7e-37 160.6 234 42.3
MELO3C006113.2 Cucumis melo HOM05D003351 ORTHO05D003806 2.3e-37 160.2 234 42.3
CsaV3_3G008950 Cucumis sativus L. HOM05D003351 ORTHO05D003806 2.3e-37 160.2 234 42.3
Manes.05G035200 Manihot esculenta HOM05D003351 ORTHO05D003806 2.3e-37 160.2 234 42.3
THA.LOC104814102 Tarenaya hassleriana HOM05D003351 ORTHO05D003806 2.3e-37 160.2 234 41.5
CiPaw.01G060600 Carya illinoinensis HOM05D003351 ORTHO05D003806 5.1e-37 159.1 234 42.3
ClCG05G001560 Citrullus lanatus HOM05D003351 ORTHO05D003806 5.1e-37 159.1 216 44.9
Thhalv10007689m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 5.1e-37 159.1 234 41.9
Rhsim13G0014400 Rhododendron simsii HOM05D003351 ORTHO05D003806 8.7e-37 158.3 234 42.3
SalBow5G0930 Salvia bowleyana HOM05D003351 ORTHO05D003806 8.7e-37 158.3 235 42.1
SalBow5G3927 Salvia bowleyana HOM05D003351 ORTHO05D003806 8.7e-37 158.3 235 42.1
Atru.chr5.459 Acer truncatum HOM05D003351 ORTHO05D003806 1.1e-36 157.9 234 40.6
Aa31LG1G11070 Aethionema arabicum HOM05D003351 ORTHO05D003806 1.1e-36 157.9 234 42.3
AT1G01710 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 1.1e-36 157.9 234 41.5
Carub.0001s0050 Capsella rubella HOM05D003351 ORTHO05D003806 1.1e-36 157.9 234 41.5
TWI59G0062 Tripterygium wilfordii HOM05D003351 ORTHO05D003806 1.1e-36 157.9 234 41.0
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 1.5e-36 157.5 234 40.6
CSS0020727 Camellia sinensis var. sinensis HOM05D003351 ORTHO05D003806 1.5e-36 157.5 221 43.0
Gorai.007G099000 Gossypium raimondii HOM05D003351 ORTHO05D003806 1.5e-36 157.5 234 41.9
Sabra14G0060600 Salix brachista HOM05D003351 ORTHO05D003806 1.5e-36 157.5 235 40.9
Peaxi162Scf00020g00237 Petunia axillaris HOM05D003351 ORTHO05D003806 1.9e-36 157.1 250 40.0
VMungo0331G1844 Vigna mungo HOM05D003351 ORTHO05D003806 1.9e-36 157.1 225 42.7
MSTRG.4857 Avicennia marina HOM05D003351 ORTHO05D003806 2.5e-36 156.8 234 41.5
Manes.01G257800 Manihot esculenta HOM05D003351 ORTHO05D003806 2.5e-36 156.8 242 44.2
Sp1g00600 Schrenkiella parvula HOM05D003351 ORTHO05D003806 2.5e-36 156.8 234 41.5
Solyc01g094550.3 Solanum lycopersicum HOM05D003351 ORTHO05D003806 2.5e-36 156.8 221 43.0
Sopen01g038360 Solanum pennellii HOM05D003351 ORTHO05D003806 2.5e-36 156.8 221 43.0
SGA_v2.0_scaffold43G16419 Striga asiatica HOM05D003351 ORTHO05D003806 2.5e-36 156.8 234 41.5
Actinidia33422 Actinidia chinensis HOM05D003351 ORTHO05D003806 3.3e-36 156.4 234 41.5
Dinv43809 Davidia involucrata HOM05D003351 ORTHO05D003806 3.3e-36 156.4 221 43.4
Gohir.A11G088400 Gossypium hirsutum HOM05D003351 ORTHO05D003806 4.3e-36 156.0 234 41.9
Phvul.010G098200 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 4.3e-36 156.0 224 40.6
CANSAT56G4221 Cannabis sativa HOM05D003351 ORTHO05D003806 5.6e-36 155.6 221 42.1
Ciclev10020242m.g Citrus clementina HOM05D003351 ORTHO05D003806 7.3e-36 155.2 221 41.6
ECA236G4888 Erigeron canadensis HOM05D003351 ORTHO05D003806 7.3e-36 155.2 234 40.6
Eucgr.E00141 Eucalyptus grandis HOM05D003351 ORTHO05D003806 7.3e-36 155.2 249 36.9
Aqoxy7G00326 Aquilegia oxysepala HOM05D003351 ORTHO05D003806 9.6e-36 154.8 234 39.3
arahy.Tifrunner.gnm1.ann1.UANN5Y Arachis hypogaea HOM05D003351 ORTHO05D003806 9.6e-36 154.8 227 42.3
HanXRQChr06g0170081 Helianthus annuus HOM05D003351 ORTHO05D003806 9.6e-36 154.8 221 41.2
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 1.3e-35 154.5 234 40.2
BolC5t28825H Brassica oleracea HOM05D003351 ORTHO05D003806 1.3e-35 154.5 234 40.2
BraA10t42310Z Brassica rapa HOM05D003351 ORTHO05D003806 1.3e-35 154.5 234 40.2
Cpa.g.sc18.250 Carica papaya HOM05D003351 ORTHO05D003806 1.3e-35 154.5 234 40.2
Lalb_Chr19g0126941 Lupinus albus HOM05D003351 ORTHO05D003806 1.3e-35 154.5 221 42.1
Potri.014G083300 Populus trichocarpa HOM05D003351 ORTHO05D003806 1.3e-35 154.5 235 40.0
Lsat_1_v5_gn_7_4420 Lactuca sativa HOM05D003351 ORTHO05D003806 2.8e-35 153.3 234 40.2
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 3.6e-35 152.9 234 40.2
Nn6g33439 Nelumbo nucifera HOM05D003351 ORTHO05D003806 3.6e-35 152.9 231 41.1
CDE11G0862 Ceratophyllum demersum HOM05D003351 ORTHO05D003806 4.8e-35 152.5 238 40.8
Lj1g0000541 Lotus japonicus HOM05D003351 ORTHO05D003806 4.8e-35 152.5 225 42.2
Thecc.01G360000 Theobroma cacao HOM05D003351 ORTHO05D003806 4.8e-35 152.5 234 40.6
Duzib138G1725 Durio zibethinus HOM05D003351 ORTHO05D003806 6.2e-35 152.1 234 41.0
Os04g0558400 Oryza sativa ssp. japonica HOM05D003351 ORTHO05D003806 6.2e-35 152.1 230 41.7
TAR374G1710 Trochodendron aralioides HOM05D003351 ORTHO05D003806 6.2e-35 152.1 221 39.8
Ca_07910_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 8.1e-35 151.8 221 42.1
Glyma.07G071300 Glycine max HOM05D003351 ORTHO05D003806 1.4e-34 151.0 225 40.4
Cc02_g37920 Coffea canephora HOM05D003351 ORTHO05D003806 3.1e-34 149.8 234 40.6
DCAR_015970 Daucus carota HOM05D003351 ORTHO05D003806 3.1e-34 149.8 270 37.4
Lalb_Chr19g0126951 Lupinus albus HOM05D003351 ORTHO05D003806 4.0e-34 149.4 233 40.3
Prupe.2G169700 Prunus persica HOM05D003351 ORTHO05D003806 5.3e-34 149.1 234 40.2
Duzib133G0362 Durio zibethinus HOM05D003351 ORTHO05D003806 6.9e-34 148.7 234 40.6
Lj9A583T62 Lonicera japonica HOM05D003351 ORTHO05D003806 1.2e-33 147.9 233 41.6
TPR.G37800 Trifolium pratense HOM05D003351 ORTHO05D003806 1.2e-33 147.9 221 40.7
Glyma.03G009800 Glycine max HOM05D003351 ORTHO05D003806 1.5e-33 147.5 225 40.0
DCAR_006927 Daucus carota HOM05D003351 ORTHO05D003806 2.0e-33 147.1 222 40.5
FvH4_7g14192 Fragaria vesca HOM05D003351 ORTHO05D003806 2.6e-33 146.7 221 39.8
Phvul.008G065700 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 2.6e-33 146.7 221 42.5
AUR62022554 Chenopodium quinoa HOM05D003351 ORTHO05D003806 3.4e-33 146.4 221 38.9
MD01G1058600 Malus domestica HOM05D003351 ORTHO05D003806 4.4e-33 146.0 238 39.5
Migut.N01442 Erythranthe guttata HOM05D003351 ORTHO05D003806 5.8e-33 145.6 238 40.3
Sp6g00550 Schrenkiella parvula HOM05D003351 ORTHO05D003806 5.8e-33 145.6 234 38.9
BcaB01g02157 Brassica carinata HOM05D003351 ORTHO05D003806 2.2e-32 143.7 234 38.5
Glyma.09G260200 Glycine max HOM05D003351 ORTHO05D003806 2.9e-32 143.3 234 39.7
Lalb_Chr17g0339681 Lupinus albus HOM05D003351 ORTHO05D003806 2.9e-32 143.3 226 39.4
Psat0s3577g0160 Pisum sativum HOM05D003351 ORTHO05D003806 3.8e-32 142.9 221 39.4
DCAR_025188 Daucus carota HOM05D003351 ORTHO05D003806 8.4e-32 141.7 270 35.6
Thhalv10029128m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 8.4e-32 141.7 234 38.0
Glyma.18G232000 Glycine max HOM05D003351 ORTHO05D003806 1.1e-31 141.4 221 40.3
C03p39170 Brassica napus HOM05D003351 ORTHO05D003806 1.4e-31 141.0 236 38.6
Gohir.D11G092700 Gossypium hirsutum HOM05D003351 ORTHO05D003806 1.4e-31 141.0 207 42.5
PSO478G5134 Papaver somniferum HOM05D003351 ORTHO05D003806 1.4e-31 141.0 221 37.1
Medtr7g077400 Medicago truncatula HOM05D003351 ORTHO05D003806 1.9e-31 140.6 223 39.0
Sc23g0002940 Simmondsia chinensis HOM05D003351 ORTHO05D003806 2.4e-31 140.2 221 39.8
HanXRQChr04g0121601 Helianthus annuus HOM05D003351 ORTHO05D003806 3.2e-31 139.8 220 39.1
PSO782G5283 Papaver somniferum HOM05D003351 ORTHO05D003806 3.2e-31 139.8 221 36.7
BraA03t12385Z Brassica rapa HOM05D003351 ORTHO05D003806 4.2e-31 139.4 236 37.7
CARHR248670 Cardamine hirsuta HOM05D003351 ORTHO05D003806 5.4e-31 139.0 220 38.6
Medtr8g030920 Medicago truncatula HOM05D003351 ORTHO05D003806 5.4e-31 139.0 221 38.0
A03p32150 Brassica napus HOM05D003351 ORTHO05D003806 7.1e-31 138.7 236 38.1
RcHm_v2.0_Chr1g0355121 Rosa chinensis HOM05D003351 ORTHO05D003806 9.3e-31 138.3 221 39.8
ATR0680G356 Amborella trichopoda HOM05D003351 ORTHO05D003806 1.2e-30 137.9 220 37.3
TPR.G15034 Trifolium pratense HOM05D003351 ORTHO05D003806 1.2e-30 137.9 224 37.9
EL10Ac1g00424 Beta vulgaris HOM05D003351 ORTHO05D003806 1.6e-30 137.5 221 38.0
Psat4g154520 Pisum sativum HOM05D003351 ORTHO05D003806 1.6e-30 137.5 236 37.3
Psat0s3832g0080 Pisum sativum HOM05D003351 ORTHO05D003806 3.5e-30 136.3 221 39.4
BolC3t16188H Brassica oleracea HOM05D003351 ORTHO05D003806 6.0e-30 135.6 236 37.3
Psat0s3832g0040 Pisum sativum HOM05D003351 ORTHO05D003806 7.9e-30 135.2 219 38.4
AL6G52960 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 1.0e-29 134.8 222 37.8
MD01G1058300 Malus domestica HOM05D003351 ORTHO05D003806 1.7e-29 134.0 228 39.0
AT4G00520 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 6.6e-29 132.1 261 34.9
BcaB01g02197 Brassica carinata HOM05D003351 ORTHO05D003806 6.6e-29 132.1 231 36.8
BcaC03g16040 Brassica carinata HOM05D003351 ORTHO05D003806 8.7e-29 131.7 259 35.5
Aa31LG5G470 Aethionema arabicum HOM05D003351 ORTHO05D003806 1.1e-28 131.3 266 35.7
Aa31LG5G460 Aethionema arabicum HOM05D003351 ORTHO05D003806 3.3e-28 129.8 254 35.4
C02p38000 Brassica napus HOM05D003351 ORTHO05D003806 4.3e-28 129.4 259 34.4
HanXRQChr06g0170071 Helianthus annuus HOM05D003351 ORTHO05D003806 5.6e-28 129.0 218 38.1
Carub.0006s3675 Capsella rubella HOM05D003351 ORTHO05D003806 7.4e-28 128.6 237 36.3
Psat0s3577g0040 Pisum sativum HOM05D003351 ORTHO05D003806 7.4e-28 128.6 219 36.1
BolC2t09816H Brassica oleracea HOM05D003351 ORTHO05D003806 2.1e-27 127.1 259 34.0
FAN06G3044 Fragaria x ananassa HOM05D003351 ORTHO05D003806 2.8e-27 126.7 221 37.1
AUR62004348 Chenopodium quinoa HOM05D003351 ORTHO05D003806 4.8e-27 125.9 203 40.9
BraA02t07405Z Brassica rapa HOM05D003351 ORTHO05D003806 6.2e-27 125.6 234 35.5
A02p24120 Brassica napus HOM05D003351 ORTHO05D003806 1.4e-26 124.4 260 35.0
PSO478G3804 Papaver somniferum HOM05D003351 ORTHO05D003806 5.3e-26 122.5 234 33.3
PSO782G0254 Papaver somniferum HOM05D003351 ORTHO05D003806 5.3e-26 122.5 234 33.3
FAN10G4309 Fragaria x ananassa HOM05D003351 ORTHO05D003806 6.9e-26 122.1 218 37.6
Hund16926 Selenicereus undatus HOM05D003351 ORTHO05D003806 6.9e-26 122.1 204 40.2
PSO782G2636 Papaver somniferum HOM05D003351 ORTHO05D003806 9.0e-26 121.7 234 33.8
BcaNung05354 Brassica carinata HOM05D003351 ORTHO05D003806 1.2e-25 121.3 238 35.7
COL.COLO4_12706 Corchorus olitorius HOM05D003351 ORTHO05D003806 2.0e-25 120.6 207 38.2
arahy.Tifrunner.gnm1.ann1.M409IX Arachis hypogaea HOM05D000404 ORTHO05D002003 3.4e-25 119.8 198 38.9
Ca_23637_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 4.5e-25 119.4 192 39.1
Haze_15492 Corylus avellana HOM05D003351 ORTHO05D003806 9.9e-25 118.2 88 63.6
PSO478G2412 Papaver somniferum HOM05D003351 ORTHO05D003806 2.9e-24 116.7 233 33.0
QL08p048969 Quercus lobata HOM05D003351 ORTHO05D003806 8.4e-24 115.2 88 59.1
HPP92_008506 Vanilla planifolia HOM05D003351 ORTHO05D003806 2.4e-23 113.6 195 37.4
Zm00001eb429310 Zea mays HOM05D003351 ORTHO05D003806 2.4e-23 113.6 83 62.7
Oeu037304.1 Olea europaea HOM05D003351 ORTHO05D003806 5.5e-23 112.5 88 59.1
Oeu037305.1 Olea europaea HOM05D003351 ORTHO05D003806 5.5e-23 112.5 88 59.1
BcaC01g06871 Brassica carinata HOM05D003351 ORTHO05D003806 7.1e-23 112.1 250 32.8
CAN.G78.58 Capsicum annuum HOM05D003351 ORTHO05D003806 9.3e-23 111.7 88 59.1
Ah.05g180660 Amaranthus hybridus HOM05D003351 ORTHO05D003806 1.6e-22 110.9 226 32.7
Lj7A514T28 Lonicera japonica HOM05D003351 ORTHO05D003806 3.5e-22 109.8 88 58.0
HanXRQChr04g0121591 Helianthus annuus HOM05D003351 ORTHO05D003806 4.6e-22 109.4 240 35.8
CARHR000630 Cardamine hirsuta HOM05D003351 ORTHO05D003806 6.0e-22 109.0 88 58.0
CAN.G78.57 Capsicum annuum HOM05D003351 ORTHO05D003806 2.3e-21 107.1 104 49.0
PSO063G6511 Papaver somniferum HOM05D003351 ORTHO05D003806 1.1e-20 104.8 234 32.1
unitig_22.g6719 Utricularia gibba HOM05D003351 ORTHO05D003806 1.1e-20 104.8 90 53.3
FAN06G4684 Fragaria x ananassa HOM05D003351 ORTHO05D003806 1.9e-20 104.0 88 54.5
SEGI_22600 Sequoiadendron giganteum HOM05D003351 ORTHO05D003806 9.6e-20 101.7 87 55.2
SMO147G0196 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 1.6e-19 100.9 205 35.1
arahy.Tifrunner.gnm1.ann1.KX913X Arachis hypogaea HOM05D003351 ORTHO05D003806 4.8e-19 99.4 87 51.7
SMO147G0381 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 8.1e-19 98.6 266 30.5
Lsat_1_v5_gn_7_4460 Lactuca sativa HOM05D003351 ORTHO05D003806 2.6e-17 93.6 184 34.8
AagrBONN_evm.TU.Sc2ySwM_228.998 Anthoceros agrestis HOM05D003351 ORTHO05D003806 6.5e-16 89.0 237 28.7
AagrBONN_evm.TU.Sc2ySwM_228.1010 Anthoceros agrestis HOM05D003351 ORTHO05D003806 4.2e-15 86.3 237 29.1
Pp3c14_7450 Physcomitrium patens HOM05D003351 ORTHO05D003806 9.3e-15 85.1 270 28.1
Glyma.18G232200 Glycine max HOM05D003351 ORTHO05D003806 2.5e-12 77.0 156 34.0
Lj7A514T27 Lonicera japonica HOM05D003351 ORTHO05D003806 3.3e-12 76.6 61 65.6
CAN.G78.59 Capsicum annuum HOM05D003351 ORTHO05D003806 4.8e-11 72.8 66 57.6
Pp3c12_25760 Physcomitrium patens HOM05D003351 ORTHO05D003806 1.8e-10 70.9 214 29.0
QL05p057193 Quercus lobata HOM05D003351 ORTHO05D003806 3.1e-10 70.1 110 40.9
PGSC0003DMG400000200 Solanum tuberosum HOM05D003351 ORTHO05D003806 1.2e-09 68.2 52 59.6
SMO147G0373 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 7.6e-09 65.5 214 28.5
Lj3g0018331 Lotus japonicus HOM05D003351 ORTHO05D003806 1.0e-08 65.1 48 62.5
vmacro23203 Vaccinium macrocarpon HOM05D003351 ORTHO05D003806 2.9e-08 63.5 72 44.4
Mapoly0016s0008 Marchantia polymorpha HOM05D003351 ORTHO05D003806 8.4e-08 62.0 236 27.1
TPR.G14856 Trifolium pratense HOM05D003351 ORTHO05D003806 1.1e-07 61.6 48 60.4
SMO273G0019 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 1.2e-06 58.2 175 32.6
Pp3c10_19190 Physcomitrium patens HOM05D003351 ORTHO05D003806 6.1e-06 55.8 242 25.2


User provided reference genes

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