Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 2.2e-88 328.9 168 100.0
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 1.6e-46 189.9 164 58.5
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 2.9e-40 169.1 176 51.7
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 1.1e-39 167.2 155 52.3
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 3.2e-39 165.6 156 53.8
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 3.2e-39 165.6 156 53.8
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 5.5e-39 164.9 156 54.5
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 2.1e-38 162.9 163 49.7
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 2.7e-38 162.5 163 52.8
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 2.7e-38 162.5 165 52.7
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 3.6e-38 162.2 163 51.5
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 3.6e-38 162.2 163 51.5
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 8.8e-37 157.5 156 51.9
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 1.1e-36 157.1 177 50.8
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 2.0e-36 156.4 163 52.1
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 3.3e-36 155.6 166 48.2
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 4.4e-36 155.2 174 49.4
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 5.7e-36 154.8 165 49.7
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 7.5e-36 154.5 169 48.5
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 7.5e-36 154.5 164 51.2
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 9.7e-36 154.1 154 51.3
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 1.3e-35 153.7 156 50.6
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 1.3e-35 153.7 155 52.3
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 2.2e-35 152.9 155 50.3
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 2.2e-35 152.9 158 50.0
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 2.8e-35 152.5 162 48.8
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 2.8e-35 152.5 173 48.0
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 6.3e-35 151.4 155 51.0
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.4e-34 150.2 163 48.5
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 2.4e-34 149.4 154 47.4
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 5.3e-34 148.3 156 49.4
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 5.3e-34 148.3 164 48.8
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 7.0e-34 147.9 177 46.9
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 9.1e-34 147.5 157 47.8
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 1.2e-33 147.1 156 47.4
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 1.2e-33 147.1 170 48.2
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 1.2e-33 147.1 170 48.2
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 1.6e-33 146.7 156 46.8
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.6e-33 146.7 164 48.8
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 4.5e-33 145.2 156 47.4
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 5.9e-33 144.8 180 45.0
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 5.9e-33 144.8 163 49.1
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.9e-33 144.8 163 49.1
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.9e-33 144.8 163 49.1
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 5.9e-33 144.8 155 47.1
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 5.9e-33 144.8 128 58.6
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 7.7e-33 144.4 156 46.8
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 7.7e-33 144.4 160 46.2
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 1.0e-32 144.1 161 49.1
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 1.0e-32 144.1 163 46.0
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 1.0e-32 144.1 148 48.6
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.3e-32 143.7 163 46.0
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 2.2e-32 142.9 156 48.1
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 2.9e-32 142.5 157 45.2
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.8e-32 142.1 163 50.3
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 5.0e-32 141.7 171 44.4
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 5.0e-32 141.7 156 46.8
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 1.1e-31 140.6 156 46.2
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 2.5e-31 139.4 156 47.4
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 4.2e-31 138.7 158 48.7
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 4.2e-31 138.7 163 44.8
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.2e-30 137.1 165 45.5
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 2.7e-30 136.0 169 43.8
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 1.0e-29 134.0 157 42.7
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 1.8e-29 133.3 153 45.1
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 2.3e-29 132.9 161 46.0
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 2.3e-29 132.9 157 43.9
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 4.0e-29 132.1 162 43.8
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 5.2e-29 131.7 169 43.8
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 5.2e-29 131.7 149 46.3
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 6.8e-29 131.3 154 46.8
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 8.8e-29 131.0 155 46.5
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 1.2e-28 130.6 166 44.0
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 1.5e-28 130.2 141 47.5
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 2.0e-28 129.8 162 42.6
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 2.6e-28 129.4 127 54.3
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 3.4e-28 129.0 160 42.5
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 4.4e-28 128.6 155 45.2
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 5.7e-28 128.3 153 45.8
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 7.5e-28 127.9 157 42.7
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 7.5e-28 127.9 159 45.3
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 7.5e-28 127.9 161 44.1
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 7.5e-28 127.9 156 44.9
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 7.5e-28 127.9 157 43.3
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 1.3e-27 127.1 161 43.5
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 2.2e-27 126.3 157 44.6
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 3.7e-27 125.6 162 44.4
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 4.8e-27 125.2 156 44.2
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 1.1e-26 124.0 156 43.6
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 1.1e-26 124.0 156 43.6
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 1.1e-26 124.0 156 43.6
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 1.1e-26 124.0 129 48.8
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 1.4e-26 123.6 161 43.5
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 2.4e-26 122.9 157 40.1
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 3.1e-26 122.5 160 43.1
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 5.4e-26 121.7 160 43.1
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 5.4e-26 121.7 160 43.1
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 5.4e-26 121.7 156 42.9
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 7.0e-26 121.3 156 42.3
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 7.0e-26 121.3 197 36.0
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 9.1e-26 120.9 156 42.9
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 1.2e-25 120.6 160 43.1
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 1.6e-25 120.2 157 41.4
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 1.3e-24 117.1 123 50.4
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.7e-24 116.7 116 50.9
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 3.8e-24 115.5 162 40.7
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 8.5e-24 114.4 120 47.5
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 1.1e-23 114.0 160 41.2
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 4.7e-22 108.6 159 40.9
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 1.0e-21 107.5 174 36.8
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.3e-21 106.3 120 45.8
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.8e-18 96.7 162 37.7
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 2.4e-18 96.3 156 38.5
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 3.1e-18 95.9 166 38.0
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 7.0e-18 94.7 157 37.6
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 7.0e-18 94.7 157 37.6
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 9.2e-18 94.4 96 51.0
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.2e-17 94.0 154 37.0
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 2.7e-17 92.8 112 44.6
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.9e-17 91.7 156 38.5
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 5.0e-16 88.6 126 38.1
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 5.6e-15 85.1 165 31.5
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 6.1e-14 81.6 141 37.6
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.2e-12 77.4 84 42.9
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 1.2e-12 77.4 161 32.3
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 7.5e-12 74.7 157 31.8
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 1.3e-11 73.9 137 34.3
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 2.4e-10 69.7 69 46.4
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 3.5e-09 65.9 71 46.5
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.7e-08 63.5 84 42.9


User provided reference genes

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