Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13317 Sapria himalayana HOM05D006438 ORTHO05D007998 3.7e-269 931.0 485 100.0
Manes.13G078900 Manihot esculenta HOM05D006438 ORTHO05D007998 6.8e-114 415.2 346 63.6
Duzib138G1266 Durio zibethinus HOM05D006438 ORTHO05D007998 3.7e-112 409.5 359 62.7
Thecc.01G341800 Theobroma cacao HOM05D006438 ORTHO05D007998 2.4e-111 406.8 365 61.6
CiPaw.02G041100 Carya illinoinensis HOM05D006438 ORTHO05D007998 2.7e-110 403.3 373 61.1
Gohir.D08G146100 Gossypium hirsutum HOM05D006438 ORTHO05D007998 1.7e-109 400.6 360 63.3
Gorai.004G151600 Gossypium raimondii HOM05D006438 ORTHO05D007998 2.3e-109 400.2 360 63.6
QL06p050047 Quercus lobata HOM05D006438 ORTHO05D007998 2.9e-109 399.8 346 62.7
Gohir.A08G125100 Gossypium hirsutum HOM05D006438 ORTHO05D007998 3.8e-109 399.4 365 62.2
QL11p022848 Quercus lobata HOM05D006438 ORTHO05D007998 1.1e-108 397.9 346 62.7
Dinv32596 Davidia involucrata HOM05D006438 ORTHO05D007998 4.2e-108 396.0 359 61.0
Ciclev10019221m.g Citrus clementina HOM05D006438 ORTHO05D007998 1.2e-107 394.4 379 57.5
vmacro13165 Vaccinium macrocarpon HOM05D006438 ORTHO05D007998 1.6e-107 394.0 339 62.2
Lj7A500T115 Lonicera japonica HOM05D006438 ORTHO05D007998 2.8e-107 393.3 336 62.2
DCAR_005393 Daucus carota HOM05D006438 ORTHO05D007998 3.0e-106 389.8 339 59.6
Manes.13G077643 Manihot esculenta HOM05D006438 ORTHO05D007998 4.0e-106 389.4 347 60.8
TWI59G0942 Tripterygium wilfordii HOM05D006438 ORTHO05D007998 5.2e-106 389.0 352 60.2
Atru.chr5.676 Acer truncatum HOM05D006438 ORTHO05D007998 2.0e-105 387.1 304 66.1
Actinidia20246 Actinidia chinensis HOM05D006438 ORTHO05D007998 5.7e-105 385.6 336 61.6
Glyma.19G256300 Glycine max HOM05D006438 ORTHO05D007998 5.7e-105 385.6 389 55.3
Potri.002G171600 Populus trichocarpa HOM05D006438 ORTHO05D007998 1.3e-104 384.4 376 56.6
FAN03G1123 Fragaria x ananassa HOM05D006438 ORTHO05D007998 1.7e-104 384.0 347 59.1
Hund27192 Selenicereus undatus HOM05D006438 ORTHO05D007998 1.7e-104 384.0 379 56.2
Nn3g18981 Nelumbo nucifera HOM05D006438 ORTHO05D007998 3.7e-104 382.9 353 60.6
Cfa003796 Carpinus fangiana HOM05D006438 ORTHO05D007998 6.3e-104 382.1 346 60.1
CANSAT56G2224 Cannabis sativa HOM05D006438 ORTHO05D007998 1.4e-103 380.9 364 56.6
Prupe.2G189300 Prunus persica HOM05D006438 ORTHO05D007998 1.8e-103 380.6 347 59.9
Lj1g0004073 Lotus japonicus HOM05D006438 ORTHO05D007998 2.4e-103 380.2 366 56.8
Sabra14G0072800 Salix brachista HOM05D006438 ORTHO05D007998 5.4e-103 379.0 370 57.0
TPR.G4682 Trifolium pratense HOM05D006438 ORTHO05D007998 5.4e-103 379.0 370 54.9
Ca_09510_v3 Cicer arietinum L. HOM05D006438 ORTHO05D007998 2.0e-102 377.1 351 56.7
Ca_30059_v3 Cicer arietinum L. HOM05D006438 ORTHO05D007998 2.0e-102 377.1 351 56.7
Glyma.03G257800 Glycine max HOM05D006438 ORTHO05D007998 2.7e-102 376.7 393 54.2
Lalb_Chr18g0044491 Lupinus albus HOM05D006438 ORTHO05D007998 2.7e-102 376.7 356 57.9
FAN10G0107 Fragaria x ananassa HOM05D006438 ORTHO05D007998 3.5e-102 376.3 347 58.5
FAN10G3447 Fragaria x ananassa HOM05D006438 ORTHO05D007998 3.5e-102 376.3 347 58.5
Migut.B01878 Erythranthe guttata HOM05D006438 ORTHO05D007998 5.9e-102 375.6 351 59.5
MSTRG.17348 Avicennia marina HOM05D006438 ORTHO05D007998 1.0e-101 374.8 397 53.1
Psat3g002440 Pisum sativum HOM05D006438 ORTHO05D007998 1.0e-101 374.8 358 56.4
Haze_15664 Corylus avellana HOM05D006438 ORTHO05D007998 1.7e-101 374.0 372 55.6
Eucgr.A01924 Eucalyptus grandis HOM05D006438 ORTHO05D007998 2.3e-101 373.6 361 57.6
AUR62023453 Chenopodium quinoa HOM05D006438 ORTHO05D007998 5.0e-101 372.5 341 58.7
arahy.Tifrunner.gnm1.ann1.QN4XTT Arachis hypogaea HOM05D006438 ORTHO05D007998 6.6e-101 372.1 352 58.2
ECA236G2598 Erigeron canadensis HOM05D006438 ORTHO05D007998 8.6e-101 371.7 336 60.4
FvH4_7g16650 Fragaria vesca HOM05D006438 ORTHO05D007998 8.6e-101 371.7 342 58.8
THA.LOC104817364 Tarenaya hassleriana HOM05D006438 ORTHO05D007998 1.1e-100 371.3 344 59.6
MD07G1150500 Malus domestica HOM05D006438 ORTHO05D007998 1.5e-100 370.9 343 59.5
Nitab4.5_0013402g0010 Nicotiana tabacum HOM05D006438 ORTHO05D007998 1.5e-100 370.9 355 57.5
SGA_v2.0_scaffold5G03022 Striga asiatica HOM05D006438 ORTHO05D007998 1.5e-100 370.9 363 57.0
arahy.Tifrunner.gnm1.ann1.TZA1ET Arachis hypogaea HOM05D006438 ORTHO05D007998 1.9e-100 370.5 351 58.4
RcHm_v2.0_Chr1g0359811 Rosa chinensis HOM05D006438 ORTHO05D007998 3.3e-100 369.8 342 57.3
Phvul.006G113600 Phaseolus vulgaris HOM05D006438 ORTHO05D007998 4.3e-100 369.4 363 55.9
Peaxi162Scf00786g00012 Petunia axillaris HOM05D006438 ORTHO05D007998 5.6e-100 369.0 360 57.2
Nitab4.5_0000172g0480 Nicotiana tabacum HOM05D006438 ORTHO05D007998 1.2e-99 367.9 336 58.9
EL10Ac1g00261 Beta vulgaris HOM05D006438 ORTHO05D007998 2.1e-99 367.1 396 53.0
MD01G1082100 Malus domestica HOM05D006438 ORTHO05D007998 2.1e-99 367.1 343 58.9
PGSC0003DMG400000230 Solanum tuberosum HOM05D006438 ORTHO05D007998 2.8e-99 366.7 335 59.1
Cc10_g13840 Coffea canephora HOM05D006438 ORTHO05D007998 3.6e-99 366.3 364 56.9
Aa31LG10G15790 Aethionema arabicum HOM05D006438 ORTHO05D007998 6.1e-99 365.5 365 56.4
CSS0029538 Camellia sinensis var. sinensis HOM05D006438 ORTHO05D007998 6.1e-99 365.5 371 56.1
Sopen01g039750 Solanum pennellii HOM05D006438 ORTHO05D007998 1.4e-98 364.4 335 58.8
Rhsim07G0003900 Rhododendron simsii HOM05D006438 ORTHO05D007998 1.8e-98 364.0 337 60.5
VMungo0540G1767 Vigna mungo HOM05D006438 ORTHO05D007998 1.8e-98 364.0 367 55.0
CAN.G1415.26 Capsicum annuum HOM05D006438 ORTHO05D007998 6.8e-98 362.1 354 57.6
SalBow3G2635 Salvia bowleyana HOM05D006438 ORTHO05D007998 6.8e-98 362.1 336 58.0
CSS0017951 Camellia sinensis var. sinensis HOM05D006438 ORTHO05D007998 8.9e-98 361.7 336 59.5
Lsat_1_v5_gn_7_1020 Lactuca sativa HOM05D006438 ORTHO05D007998 8.9e-98 361.7 358 56.1
PSO063G1116 Papaver somniferum HOM05D006438 ORTHO05D007998 2.6e-97 360.1 350 57.1
Solyc01g096030.4 Solanum lycopersicum HOM05D006438 ORTHO05D007998 2.6e-97 360.1 340 58.2
PSO170G3726 Papaver somniferum HOM05D006438 ORTHO05D007998 1.3e-96 357.8 350 56.9
Medtr7g117420 Medicago truncatula HOM05D006438 ORTHO05D007998 2.9e-96 356.7 367 52.6
Sc23g0002070 Simmondsia chinensis HOM05D006438 ORTHO05D007998 6.4e-96 355.5 347 55.6
AL5G44360 Arabidopsis lyrata HOM05D006438 ORTHO05D007998 8.3e-96 355.1 342 57.6
Ah.05g179490 Amaranthus hybridus HOM05D006438 ORTHO05D007998 1.4e-95 354.4 350 55.7
AT3G61800 Arabidopsis thaliana HOM05D006438 ORTHO05D007998 9.2e-95 351.7 342 56.7
Cpa.g.sc96.25 Carica papaya HOM05D006438 ORTHO05D007998 1.2e-94 351.3 348 56.3
Nn1g00253 Nelumbo nucifera HOM05D006438 ORTHO05D007998 3.5e-94 349.7 366 56.6
GSVIVG01027157001 Vitis vinifera HOM05D006438 ORTHO05D007998 3.0e-93 346.7 341 56.6
HanXRQChr04g0120541 Helianthus annuus HOM05D006438 ORTHO05D007998 5.0e-93 345.9 337 57.6
HPP92_008818 Vanilla planifolia HOM05D006438 ORTHO05D007998 6.6e-93 345.5 402 51.5
CARHR172130 Cardamine hirsuta HOM05D006438 ORTHO05D007998 8.6e-93 345.1 345 55.7
Carub.0005s2854 Capsella rubella HOM05D006438 ORTHO05D007998 1.1e-92 344.7 343 54.5
Sp5g01570 Schrenkiella parvula HOM05D006438 ORTHO05D007998 1.1e-92 344.7 371 53.6
Actinidia10144 Actinidia chinensis HOM05D006438 ORTHO05D007998 3.3e-92 343.2 336 56.5
PGR031G2090 Punica granatum HOM05D006438 ORTHO05D007998 5.6e-92 342.4 364 54.7
BraA07t30216Z Brassica rapa HOM05D006438 ORTHO05D007998 2.1e-91 340.5 339 56.6
FAN01G1234 Fragaria x ananassa HOM05D006438 ORTHO05D007998 2.8e-91 340.1 363 53.7
A07p25760 Brassica napus HOM05D006438 ORTHO05D007998 6.2e-91 339.0 339 56.3
Thhalv10005821m.g Eutrema salsugineum HOM05D006438 ORTHO05D007998 1.4e-90 337.8 372 53.0
CDE08G0794 Ceratophyllum demersum HOM05D006438 ORTHO05D007998 2.3e-90 337.0 359 52.4
BolC6t37959H Brassica oleracea HOM05D006438 ORTHO05D007998 3.1e-90 336.7 340 56.5
MBI07_g40678_MAGBIO Magnolia biondii HOM05D006438 ORTHO05D007998 4.0e-90 336.3 366 53.8
ATR0602G124 Amborella trichopoda HOM05D006438 ORTHO05D007998 1.5e-89 334.3 355 53.2
Sed0005284 Sechium edule HOM05D006438 ORTHO05D007998 2.6e-89 333.6 345 54.2
ClCG06G001260 Citrullus lanatus HOM05D006438 ORTHO05D007998 3.4e-89 333.2 345 54.5
BcaC08g45168 Brassica carinata HOM05D006438 ORTHO05D007998 9.8e-89 331.6 314 58.0
C06p27980 Brassica napus HOM05D006438 ORTHO05D007998 9.8e-89 331.6 340 55.3
Aqoxy5G04279 Aquilegia oxysepala HOM05D006438 ORTHO05D007998 1.7e-88 330.9 356 54.8
unitig_37.g12626 Utricularia gibba HOM05D006438 ORTHO05D007998 7.0e-87 325.5 362 51.4
MELO3C022408.2 Cucumis melo HOM05D006438 ORTHO05D007998 4.6e-86 322.8 337 55.2
COL.COLO4_06280 Corchorus olitorius HOM05D006438 ORTHO05D007998 5.0e-85 319.3 272 64.0
CsaV3_6G007190 Cucumis sativus L. HOM05D006438 ORTHO05D007998 8.1e-83 312.0 347 53.0
Potri.014G099300 Populus trichocarpa HOM05D006438 ORTHO05D007998 6.4e-80 302.4 311 54.3
AUR62004500 Chenopodium quinoa HOM05D006438 ORTHO05D007998 2.1e-78 297.4 349 49.6
Pp3c3_31410 Physcomitrium patens HOM05D006438 ORTHO05D007998 1.5e-65 254.6 367 42.0
SEGI_11798 Sequoiadendron giganteum HOM05D006438 ORTHO05D007998 1.4e-63 248.1 340 46.8
Mapoly0002s0048 Marchantia polymorpha HOM05D006438 ORTHO05D007998 3.2e-63 246.9 347 41.5
SMO365G0083 Selaginella moellendorffii HOM05D006438 ORTHO05D007998 3.5e-62 243.4 358 39.7
Zm00001eb378420 Zea mays HOM05D006438 ORTHO05D007998 2.0e-49 201.1 276 41.7
BcaC08g45166 Brassica carinata HOM05D006438 ORTHO05D007998 1.8e-45 188.0 223 49.3
Dinv35119 Davidia involucrata HOM05D006438 ORTHO05D007998 6.7e-37 159.5 183 51.9
AagrBONN_evm.TU.Sc2ySwM_368.299 Anthoceros agrestis HOM05D006438 ORTHO05D007998 1.2e-30 138.7 345 29.3
Hma1.2p1_1974F.1_g309610 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 5.9e-17 93.2 91 56.0
TPR.G7870 Trifolium pratense HOM05D000002 ORTHO05D000001 1.4e-15 88.6 89 55.1
MCO15G002 Micromonas commoda HOM05D006438 ORTHO05D007998 6.1e-14 83.2 226 31.0
Hma1.2p1_0547F.1_g176600 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.8e-13 81.6 154 36.4
TPR.G3611 Trifolium pratense HOM05D000002 ORTHO05D026049 3.0e-13 80.9 89 46.1
Zm00001eb167390 Zea mays HOM05D006438 ORTHO05D007998 1.1e-12 79.0 87 51.7
SHI14320 Sapria himalayana HOM05D000002 ORTHO05D000001 4.4e-12 77.0 91 45.1
SHI22439 Sapria himalayana HOM05D000002 ORTHO05D000001 1.7e-11 75.1 91 44.0
Sabra02G0141200 Salix brachista HOM05D006438 ORTHO05D007998 3.7e-11 73.9 92 43.5
Psat0s193g0280 Pisum sativum HOM05D000002 ORTHO05D000047 4.8e-11 73.6 84 45.2
AUR62028061 Chenopodium quinoa HOM05D000051 ORTHO05D000015 5.3e-10 70.1 80 43.8
AUR62044538 Chenopodium quinoa HOM05D000051 ORTHO05D000015 5.3e-10 70.1 80 43.8
Hma1.2p1_0084F.1_g043170 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 7.0e-10 69.7 63 54.0
PSO541G4010 Papaver somniferum HOM05D000002 ORTHO05D000001 7.0e-10 69.7 104 38.5
BolC6t37557H Brassica oleracea HOM05D000002 ORTHO05D000001 9.1e-10 69.3 90 44.4
SHI10167 Sapria himalayana HOM05D000002 ORTHO05D000001 9.1e-10 69.3 101 39.6
C06p23930 Brassica napus HOM05D000002 ORTHO05D000001 1.7e-08 65.1 65 49.2
PSO541G0327 Papaver somniferum HOM05D000002 ORTHO05D000001 2.2e-08 64.7 90 41.1
PSO675G0323 Papaver somniferum HOM05D000002 ORTHO05D000001 8.5e-08 62.8 65 46.2
PSO063G3500 Papaver somniferum HOM05D000002 ORTHO05D000001 1.1e-07 62.4 90 41.1
Aa31LG10G11130 Aethionema arabicum HOM05D000002 ORTHO05D000047 1.5e-07 62.0 101 36.6
PSO063G5787 Papaver somniferum HOM05D000002 ORTHO05D000047 1.5e-07 62.0 89 40.4
Psat7g228680 Pisum sativum HOM05D000002 ORTHO05D012330 1.5e-07 62.0 96 37.5
Sopen10g025120 Solanum pennellii HOM05D000002 ORTHO05D000001 4.2e-07 60.5 89 38.2
EL10Ac2g02797 Beta vulgaris HOM05D000002 ORTHO05D000047 1.2e-06 58.9 103 35.0
EL10Ac6g15696 Beta vulgaris HOM05D000002 ORTHO05D000047 1.2e-06 58.9 103 35.0
Sp3g12020 Schrenkiella parvula HOM05D000002 ORTHO05D000047 2.1e-06 58.2 90 33.3
Aa31sc496G10 Aethionema arabicum HOM05D006438 ORTHO05D007998 3.6e-06 57.4 77 44.2
PSO210G6905 Papaver somniferum HOM05D000002 ORTHO05D000047 6.1e-06 56.6 97 39.2
PSO384G2733 Papaver somniferum HOM05D000002 ORTHO05D000001 6.1e-06 56.6 89 41.6
PSO675G4399 Papaver somniferum HOM05D000002 ORTHO05D000047 6.1e-06 56.6 97 39.2
THA.LOC104807073 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 8.0e-06 56.2 111 32.4


User provided reference genes

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