Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13275 Sapria himalayana HOM05D000751 ORTHO05D018165 3.2e-127 458.4 223 100.0
TPR.G31614 Trifolium pratense HOM05D000751 ORTHO05D000889 2.3e-32 143.3 105 64.8
FvH4_7g16250 Fragaria vesca HOM05D000751 ORTHO05D000889 6.2e-30 135.2 79 77.2
FAN01G0360 Fragaria x ananassa HOM05D000751 ORTHO05D000889 6.2e-30 135.2 79 77.2
FAN03G1458 Fragaria x ananassa HOM05D000751 ORTHO05D000889 6.2e-30 135.2 79 77.2
FAN06G1708 Fragaria x ananassa HOM05D000751 ORTHO05D000889 6.2e-30 135.2 79 77.2
FAN06G2986 Fragaria x ananassa HOM05D000751 ORTHO05D000889 6.2e-30 135.2 79 77.2
FAN10G1631 Fragaria x ananassa HOM05D000751 ORTHO05D000889 6.2e-30 135.2 79 77.2
FAN10G3268 Fragaria x ananassa HOM05D000751 ORTHO05D000889 6.2e-30 135.2 79 77.2
Medtr8g027790 Medicago truncatula HOM05D000751 ORTHO05D000889 1.1e-29 134.4 79 77.2
Psat4g214480 Pisum sativum HOM05D000751 ORTHO05D000889 1.1e-29 134.4 81 75.3
Ca_26355_v3 Cicer arietinum L. HOM05D000751 ORTHO05D000889 1.4e-29 134.0 79 77.2
Ca_30811_v3 Cicer arietinum L. HOM05D000751 ORTHO05D000889 1.4e-29 134.0 79 77.2
Prupe.2G186200 Prunus persica HOM05D000751 ORTHO05D000889 1.4e-29 134.0 79 77.2
Glyma.07G056700 Glycine max HOM05D000751 ORTHO05D000889 1.8e-29 133.7 79 77.2
VMungo0331G1997 Vigna mungo HOM05D000751 ORTHO05D000889 1.8e-29 133.7 79 77.2
ClCG09G009590 Citrullus lanatus HOM05D000751 ORTHO05D000889 2.4e-29 133.3 79 75.9
MELO3C023722.2 Cucumis melo HOM05D000751 ORTHO05D000889 2.4e-29 133.3 79 75.9
CsaV3_7G025210 Cucumis sativus L. HOM05D000751 ORTHO05D000889 2.4e-29 133.3 79 75.9
arahy.Tifrunner.gnm1.ann1.2FK0GQ Arachis hypogaea HOM05D000751 ORTHO05D000889 4.0e-29 132.5 79 74.7
arahy.Tifrunner.gnm1.ann1.8G1IGY Arachis hypogaea HOM05D000751 ORTHO05D000889 4.0e-29 132.5 79 74.7
Phvul.010G112700 Phaseolus vulgaris HOM05D000751 ORTHO05D000889 4.0e-29 132.5 79 75.9
MD07G1148100 Malus domestica HOM05D000751 ORTHO05D000889 9.0e-29 131.3 79 75.9
Glyma.16G025800 Glycine max HOM05D000751 ORTHO05D000889 1.5e-28 130.6 79 75.9
CANSAT56G1511 Cannabis sativa HOM05D000751 ORTHO05D000889 2.0e-28 130.2 79 73.4
Cfa003812 Carpinus fangiana HOM05D000751 ORTHO05D000889 2.6e-28 129.8 79 74.7
Haze_15642 Corylus avellana HOM05D000751 ORTHO05D000889 3.4e-28 129.4 79 74.7
CiPaw.02G039900 Carya illinoinensis HOM05D000751 ORTHO05D000889 4.5e-28 129.0 79 73.4
PGR031G2844 Punica granatum HOM05D000751 ORTHO05D000889 5.8e-28 128.6 79 74.7
Phvul.006G112100 Phaseolus vulgaris HOM05D000751 ORTHO05D000889 2.9e-27 126.3 79 69.6
Sabra02G0142700 Salix brachista HOM05D000751 ORTHO05D000889 3.8e-27 125.9 80 73.8
Lj3g0026226 Lotus japonicus HOM05D000751 ORTHO05D000889 4.9e-27 125.6 79 72.2
MD01G1079200 Malus domestica HOM05D000751 ORTHO05D000889 4.9e-27 125.6 79 73.4
Lalb_Chr10g0100421 Lupinus albus HOM05D000751 ORTHO05D018165 6.4e-27 125.2 79 74.7
Lalb_Chr17g0342511 Lupinus albus HOM05D000751 ORTHO05D000889 6.4e-27 125.2 79 72.2
Ah.05g179730 Amaranthus hybridus HOM05D000751 ORTHO05D000889 8.4e-27 124.8 79 73.4
Eucgr.D02366 Eucalyptus grandis HOM05D000751 ORTHO05D000889 1.1e-26 124.4 79 72.2
Potri.002G169732 Populus trichocarpa HOM05D000751 ORTHO05D000889 1.4e-26 124.0 79 74.7
Potri.014G097600 Populus trichocarpa HOM05D000751 ORTHO05D000889 1.9e-26 123.6 79 72.2
RcHm_v2.0_Chr1g0359271 Rosa chinensis HOM05D000751 ORTHO05D000889 1.9e-26 123.6 79 73.4
Lsat_1_v5_gn_4_33301 Lactuca sativa HOM05D000751 ORTHO05D000889 4.2e-26 122.5 79 72.2
Lj9A596T52 Lonicera japonica HOM05D000751 ORTHO05D000889 4.2e-26 122.5 79 74.7
Duzib138G1949 Durio zibethinus HOM05D000751 ORTHO05D000889 5.4e-26 122.1 81 71.6
Gorai.001G155400 Gossypium raimondii HOM05D000751 ORTHO05D000889 7.1e-26 121.7 81 70.4
Gohir.A12G111700 Gossypium hirsutum HOM05D000751 ORTHO05D000889 9.3e-26 121.3 81 72.8
Gorai.008G124600 Gossypium raimondii HOM05D000751 ORTHO05D000889 9.3e-26 121.3 81 72.8
Nitab4.5_0000838g0100 Nicotiana tabacum HOM05D000751 ORTHO05D000889 1.2e-25 120.9 79 73.4
Gohir.D08G044500 Gossypium hirsutum HOM05D000751 ORTHO05D000889 1.6e-25 120.6 81 71.6
Gorai.004G043500 Gossypium raimondii HOM05D000751 ORTHO05D000889 1.6e-25 120.6 81 71.6
Nitab4.5_0001715g0030 Nicotiana tabacum HOM05D000751 ORTHO05D018165 1.6e-25 120.6 93 64.5
Nitab4.5_0008279g0040 Nicotiana tabacum HOM05D000751 ORTHO05D000889 1.6e-25 120.6 79 73.4
Gohir.A07G138300 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.1e-25 120.2 81 70.4
Gohir.D07G143400 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.1e-25 120.2 81 69.1
Gohir.D07G143466 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.1e-25 120.2 81 69.1
Sabra14G0071400 Salix brachista HOM05D000751 ORTHO05D000889 2.1e-25 120.2 79 70.9
Gohir.D12G115000 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.7e-25 119.8 81 71.6
Lalb_Chr04g0254471 Lupinus albus HOM05D000751 ORTHO05D000889 2.7e-25 119.8 79 70.9
Solyc01g095730.4 Solanum lycopersicum HOM05D000751 ORTHO05D000889 2.7e-25 119.8 79 72.2
Sopen01g039480 Solanum pennellii HOM05D000751 ORTHO05D000889 2.7e-25 119.8 79 72.2
TAR375G0110 Trochodendron aralioides HOM05D000751 ORTHO05D000889 2.7e-25 119.8 79 72.2
CSS0001619 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D018165 3.5e-25 119.4 78 74.4
CAN.G986.20 Capsicum annuum HOM05D000751 ORTHO05D000889 3.5e-25 119.4 79 72.2
Peaxi162Scf00786g00440 Petunia axillaris HOM05D000751 ORTHO05D000889 3.5e-25 119.4 79 72.2
GSVIVG01027083001 Vitis vinifera HOM05D000751 ORTHO05D000889 3.5e-25 119.4 79 69.6
Hund27209 Selenicereus undatus HOM05D000751 ORTHO05D000889 4.6e-25 119.0 79 72.2
Sc23g0002150 Simmondsia chinensis HOM05D000751 ORTHO05D000889 4.6e-25 119.0 76 77.6
Aqoxy5G04195 Aquilegia oxysepala HOM05D000751 ORTHO05D000889 6.0e-25 118.6 79 69.6
Ciclev10023855m.g Citrus clementina HOM05D000751 ORTHO05D000889 6.0e-25 118.6 79 72.2
Dinv05472 Davidia involucrata HOM05D000751 ORTHO05D000889 6.0e-25 118.6 80 68.8
Gohir.A08G033900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 6.0e-25 118.6 81 70.4
Sed0027487 Sechium edule HOM05D000751 ORTHO05D000889 6.0e-25 118.6 79 68.4
HPP92_020417 Vanilla planifolia HOM05D000751 ORTHO05D000889 6.0e-25 118.6 79 72.2
Cc02_g39220 Coffea canephora HOM05D000751 ORTHO05D000889 7.9e-25 118.2 79 72.2
Manes.01G247200 Manihot esculenta HOM05D000751 ORTHO05D000889 7.9e-25 118.2 79 73.4
Nitab4.5_0001829g0050 Nicotiana tabacum HOM05D000751 ORTHO05D000889 7.9e-25 118.2 80 71.2
Dinv32574 Davidia involucrata HOM05D000751 ORTHO05D000889 1.0e-24 117.9 79 73.4
Nn3g19032 Nelumbo nucifera HOM05D000751 ORTHO05D000889 1.0e-24 117.9 79 72.2
TAR374G0065 Trochodendron aralioides HOM05D000751 ORTHO05D000889 1.8e-24 117.1 79 72.2
TAR374G0274 Trochodendron aralioides HOM05D000751 ORTHO05D000889 1.8e-24 117.1 79 72.2
ATR0626G291 Amborella trichopoda HOM05D000751 ORTHO05D000889 2.3e-24 116.7 79 68.4
CDE04G2081 Ceratophyllum demersum HOM05D000751 ORTHO05D000889 2.3e-24 116.7 79 70.9
Actinidia28502 Actinidia chinensis HOM05D000751 ORTHO05D000889 3.0e-24 116.3 79 70.9
TWI59G1107 Tripterygium wilfordii HOM05D000751 ORTHO05D000889 3.0e-24 116.3 81 67.9
CDE07G0665 Ceratophyllum demersum HOM05D000751 ORTHO05D000889 3.9e-24 115.9 79 69.6
THA.LOC104802065 Tarenaya hassleriana HOM05D000751 ORTHO05D000889 3.9e-24 115.9 83 65.1
VMungo0540G1551 Vigna mungo HOM05D000751 ORTHO05D000889 5.1e-24 115.5 79 68.4
AUR62023477 Chenopodium quinoa HOM05D000751 ORTHO05D000889 8.7e-24 114.8 79 72.2
Sc26g0000690 Simmondsia chinensis HOM05D000751 ORTHO05D000889 8.7e-24 114.8 79 72.2
QL04p056643 Quercus lobata HOM05D000751 ORTHO05D000889 1.5e-23 114.0 82 67.1
AUR62004473 Chenopodium quinoa HOM05D000751 ORTHO05D000889 1.9e-23 113.6 79 70.9
Solyc10g009490.2 Solanum lycopersicum HOM05D000751 ORTHO05D000889 1.9e-23 113.6 79 69.6
Sopen10g005300 Solanum pennellii HOM05D000751 ORTHO05D000889 1.9e-23 113.6 79 69.6
Dinv18736 Davidia involucrata HOM05D000751 ORTHO05D000889 2.5e-23 113.2 79 70.9
EL10Ac1g00291 Beta vulgaris HOM05D000751 ORTHO05D000889 4.3e-23 112.5 79 72.2
Rhsim07G0005100 Rhododendron simsii HOM05D000751 ORTHO05D000889 5.6e-23 112.1 90 64.4
Thhalv10005749m.g Eutrema salsugineum HOM05D000751 ORTHO05D000889 7.4e-23 111.7 84 61.9
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 7.4e-23 111.7 73 72.6
Nn1g01852 Nelumbo nucifera HOM05D000751 ORTHO05D000889 7.4e-23 111.7 79 67.1
unitig_22.g6817 Utricularia gibba HOM05D000751 ORTHO05D000889 9.6e-23 111.3 79 65.8
TAR629G1929 Trochodendron aralioides HOM05D000751 ORTHO05D000889 1.3e-22 110.9 79 67.1
DCAR_006969 Daucus carota HOM05D000751 ORTHO05D000889 1.6e-22 110.5 79 67.1
Atru.chr5.651 Acer truncatum HOM05D000751 ORTHO05D000889 2.1e-22 110.2 80 63.8
Carub.0005s2844 Capsella rubella HOM05D000751 ORTHO05D000889 2.1e-22 110.2 80 63.8
Sp5g01700 Schrenkiella parvula HOM05D000751 ORTHO05D000889 2.1e-22 110.2 84 60.7
Lsat_1_v5_gn_4_33260 Lactuca sativa HOM05D000751 ORTHO05D000889 2.8e-22 109.8 79 67.1
DCAR_008660 Daucus carota HOM05D000751 ORTHO05D000889 3.6e-22 109.4 79 67.1
Manes.05G024100 Manihot esculenta HOM05D000751 ORTHO05D000889 3.6e-22 109.4 79 68.4
CSS0030430 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D018165 4.8e-22 109.0 78 69.2
vmacro13151 Vaccinium macrocarpon HOM05D000751 ORTHO05D000889 4.8e-22 109.0 79 67.1
AL5G44190 Arabidopsis lyrata HOM05D000751 ORTHO05D000889 6.2e-22 108.6 80 62.5
PSO170G4436 Papaver somniferum HOM05D000751 ORTHO05D000889 6.2e-22 108.6 79 65.8
CAN.G72.20 Capsicum annuum HOM05D000751 ORTHO05D000889 8.1e-22 108.2 79 64.6
AT3G61690 Arabidopsis thaliana HOM05D000751 ORTHO05D000889 1.1e-21 107.8 79 63.3
Lj1g0025738 Lotus japonicus HOM05D000751 ORTHO05D000889 1.1e-21 107.8 81 63.0
Potri.015G020400 Populus trichocarpa HOM05D000751 ORTHO05D000889 1.1e-21 107.8 79 67.1
THA.LOC104817608 Tarenaya hassleriana HOM05D000751 ORTHO05D018165 1.1e-21 107.8 83 60.2
Gorai.007G107700 Gossypium raimondii HOM05D000751 ORTHO05D000889 1.4e-21 107.5 81 64.2
Oeu026814.1 Olea europaea HOM05D000751 ORTHO05D000889 1.4e-21 107.5 79 65.8
PSO063G2570 Papaver somniferum HOM05D000751 ORTHO05D000889 2.4e-21 106.7 79 65.8
Aa31LG10G15690 Aethionema arabicum HOM05D000751 ORTHO05D000889 3.1e-21 106.3 83 59.0
PSO135G0332 Papaver somniferum HOM05D000751 ORTHO05D000889 4.0e-21 105.9 78 65.4
PSO384G4917 Papaver somniferum HOM05D000751 ORTHO05D000889 4.0e-21 105.9 78 65.4
SGA_v2.0_scaffold11G05730 Striga asiatica HOM05D000751 ORTHO05D000889 4.0e-21 105.9 79 67.1
A09p53780 Brassica napus HOM05D000751 ORTHO05D000889 5.3e-21 105.5 69 68.1
BraA09t40797Z Brassica rapa HOM05D000751 ORTHO05D000889 5.3e-21 105.5 69 68.1
Ciclev10018622m.g Citrus clementina HOM05D000751 ORTHO05D000889 5.3e-21 105.5 79 65.8
Migut.N01553 Erythranthe guttata HOM05D000751 ORTHO05D000889 5.3e-21 105.5 79 64.6
HanXRQChr06g0170661 Helianthus annuus HOM05D000751 ORTHO05D000889 5.3e-21 105.5 87 62.1
Aqoxy7G00122 Aquilegia oxysepala HOM05D000751 ORTHO05D000889 6.9e-21 105.1 79 68.4
HanXRQChr04g0120291 Helianthus annuus HOM05D000751 ORTHO05D000889 6.9e-21 105.1 83 65.1
Potri.012G000900 Populus trichocarpa HOM05D000751 ORTHO05D000889 6.9e-21 105.1 79 65.8
CSS0040691 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D000889 1.5e-20 104.0 79 65.8
Gohir.D11G101200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.0e-20 103.6 81 61.7
Sabra12G0020300 Salix brachista HOM05D000751 ORTHO05D000889 2.0e-20 103.6 80 63.8
GSVIVG01028706001 Vitis vinifera HOM05D000751 ORTHO05D000889 2.0e-20 103.6 79 63.3
Gohir.A11G096500 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.6e-20 103.2 81 61.7
HanXRQChr17g0562871 Helianthus annuus HOM05D000751 ORTHO05D000889 2.6e-20 103.2 79 64.6
ECA236G0082 Erigeron canadensis HOM05D000751 ORTHO05D000889 4.5e-20 102.4 82 64.6
ECA236G1997 Erigeron canadensis HOM05D000751 ORTHO05D000889 4.5e-20 102.4 82 64.6
Peaxi162Scf00218g00063 Petunia axillaris HOM05D000751 ORTHO05D000889 4.5e-20 102.4 79 65.8
Oeu019764.1 Olea europaea HOM05D000751 ORTHO05D000889 5.8e-20 102.1 79 63.3
SalBow5G0471 Salvia bowleyana HOM05D000751 ORTHO05D000889 5.8e-20 102.1 79 64.6
CARHR172000 Cardamine hirsuta HOM05D000751 ORTHO05D000889 7.6e-20 101.7 85 58.8
DCAR_010616 Daucus carota HOM05D000751 ORTHO05D000889 9.9e-20 101.3 79 62.0
SGA_v2.0_scaffold43G16370 Striga asiatica HOM05D000751 ORTHO05D000889 9.9e-20 101.3 79 60.8
BcaC08g45150 Brassica carinata HOM05D000751 ORTHO05D000889 1.3e-19 100.9 86 57.0
A07p25670 Brassica napus HOM05D000751 ORTHO05D000889 1.3e-19 100.9 86 57.0
BolC6t37939H Brassica oleracea HOM05D000751 ORTHO05D000889 1.3e-19 100.9 86 57.0
BraA07t30207Z Brassica rapa HOM05D000751 ORTHO05D000889 1.3e-19 100.9 86 57.0
Lj3C908T15 Lonicera japonica HOM05D000751 ORTHO05D000889 1.3e-19 100.9 79 62.0
C06p27680 Brassica napus HOM05D000751 ORTHO05D000889 1.7e-19 100.5 86 57.0
MSTRG.4812 Avicennia marina HOM05D000751 ORTHO05D000889 2.9e-19 99.8 79 63.3
Rhsim01G0171600 Rhododendron simsii HOM05D000751 ORTHO05D000889 3.8e-19 99.4 79 63.3
Thecc.01G344300 Theobroma cacao HOM05D000751 ORTHO05D000889 3.8e-19 99.4 81 61.7
Migut.B01854 Erythranthe guttata HOM05D000751 ORTHO05D000889 6.4e-19 98.6 79 62.0
Lalb_Chr18g0044381 Lupinus albus HOM05D000751 ORTHO05D000889 6.4e-19 98.6 73 64.4
MSTRG.20898 Avicennia marina HOM05D000751 ORTHO05D000889 3.2e-18 96.3 79 62.0
C08p36590 Brassica napus HOM05D000751 ORTHO05D000889 1.2e-17 94.4 67 65.7
BolC8t51242H Brassica oleracea HOM05D000751 ORTHO05D000889 1.2e-17 94.4 67 65.7
Actinidia10121 Actinidia chinensis HOM05D000751 ORTHO05D000889 1.6e-17 94.0 79 60.8
Rhsim03G0200200 Rhododendron simsii HOM05D000751 ORTHO05D000889 2.7e-17 93.2 80 60.0
Hund11684 Selenicereus undatus HOM05D000751 ORTHO05D000889 1.8e-16 90.5 81 59.3
Lsat_1_v5_gn_1_87760 Lactuca sativa HOM05D000751 ORTHO05D000889 2.3e-16 90.1 73 63.0
Atru.chr1.218 Acer truncatum HOM05D000751 ORTHO05D018165 3.9e-16 89.4 80 55.0
Oeu004943.2 Olea europaea HOM05D000751 ORTHO05D000889 6.7e-16 88.6 79 58.2
vmacro06560 Vaccinium macrocarpon HOM05D000751 ORTHO05D000889 6.7e-16 88.6 74 58.1
SEGI_41234 Sequoiadendron giganteum HOM05D000751 ORTHO05D000889 1.1e-15 87.8 64 64.1
AUR62006140 Chenopodium quinoa HOM05D000751 ORTHO05D000889 4.8e-14 82.4 79 54.4
Zm00001eb400460 Zea mays HOM05D000751 ORTHO05D000889 6.2e-14 82.0 68 57.4
Ah.07g205960 Amaranthus hybridus HOM05D000751 ORTHO05D000889 8.1e-14 81.6 79 54.4
Zm00001eb007050 Zea mays HOM05D000751 ORTHO05D000889 4.0e-13 79.3 68 57.4
AUR62019349 Chenopodium quinoa HOM05D000751 ORTHO05D000889 1.3e-11 74.3 79 49.4
EL10Ac3g05337 Beta vulgaris HOM05D000751 ORTHO05D000889 2.2e-11 73.6 79 49.4
CSS0000685 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D000889 6.5e-11 72.0 43 79.1
VMungo1309G0290 Vigna mungo HOM05D000751 ORTHO05D000889 1.3e-08 64.3 64 45.3
Cpa.g.sc405.7 Carica papaya HOM05D000751 ORTHO05D000889 3.9e-08 62.8 37 75.7
Mapoly0142s0009 Marchantia polymorpha HOM05D000751 ORTHO05D000889 5.1e-08 62.4 70 47.1
Psat6g161000 Pisum sativum HOM05D000751 ORTHO05D018165 6.7e-08 62.0 39 69.2
TPR.G17298 Trifolium pratense HOM05D000751 ORTHO05D000889 1.1e-07 61.2 88 36.4
vmacro13150 Vaccinium macrocarpon HOM05D000751 ORTHO05D000889 1.5e-07 60.8 43 67.4
SMO367G1101 Selaginella moellendorffii HOM05D000751 ORTHO05D000889 1.9e-07 60.5 46 60.9
Lj1g0012896 Lotus japonicus HOM05D000751 ORTHO05D000889 2.5e-07 60.1 64 42.2
Lalb_Chr08g0240491 Lupinus albus HOM05D000751 ORTHO05D000889 3.3e-07 59.7 67 43.3
Pp3c7_3260 Physcomitrium patens HOM05D000751 ORTHO05D000889 7.4e-07 58.5 86 40.7
SEGI_25351 Sequoiadendron giganteum HOM05D000751 ORTHO05D012430 4.8e-06 55.8 84 34.5
TWI77G0574 Tripterygium wilfordii HOM05D000751 ORTHO05D000889 4.8e-06 55.8 79 39.2
Nitab4.5_0003003g0020 Nicotiana tabacum HOM05D000751 ORTHO05D000889 8.2e-06 55.1 52 48.1


User provided reference genes

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