Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13195 Sapria himalayana HOM05D005178 ORTHO05D006123 2.7e-142 509.2 377 100.0
Sabra02G0144400 Salix brachista HOM05D005178 ORTHO05D006123 1.8e-45 187.6 240 43.8
Potri.002G167300 Populus trichocarpa HOM05D005178 ORTHO05D006123 1.5e-44 184.5 240 45.0
Manes.05G026400 Manihot esculenta HOM05D005178 ORTHO05D006123 9.8e-44 181.8 240 38.8
Thecc.01G348100 Theobroma cacao HOM05D005178 ORTHO05D006123 1.1e-42 178.3 242 46.3
Potri.014G094400 Populus trichocarpa HOM05D005178 ORTHO05D006123 4.5e-41 172.9 241 41.1
Duzib138G0021 Durio zibethinus HOM05D005178 ORTHO05D006123 1.0e-40 171.8 242 44.2
Gohir.D11G099200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 6.6e-40 169.1 242 39.7
Gohir.D12G113800 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.1e-39 168.3 243 35.0
Gorai.007G105400 Gossypium raimondii HOM05D005178 ORTHO05D006123 3.3e-39 166.8 242 39.3
Gohir.A11G094200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 5.6e-39 166.0 242 38.8
Duzib133G0451 Durio zibethinus HOM05D005178 ORTHO05D006123 2.1e-38 164.1 242 42.6
Ciclev10021837m.g Citrus clementina HOM05D005178 ORTHO05D006123 2.8e-38 163.7 243 45.3
CANSAT56G4005 Cannabis sativa HOM05D005178 ORTHO05D006123 6.1e-38 162.5 241 41.1
Gorai.008G123300 Gossypium raimondii HOM05D005178 ORTHO05D006123 8.0e-38 162.2 243 34.2
CiPaw.01G071600 Carya illinoinensis HOM05D005178 ORTHO05D006123 1.0e-37 161.8 242 43.8
CsaV3_3G008390 Cucumis sativus L. HOM05D000050 ORTHO05D000380 1.2e-36 158.3 241 40.2
Haze_15614 Corylus avellana HOM05D005178 ORTHO05D006123 1.5e-36 157.9 240 38.8
MELO3C006056.2 Cucumis melo HOM05D005178 ORTHO05D006123 7.5e-36 155.6 241 40.2
Nn7g37376 Nelumbo nucifera HOM05D005178 ORTHO05D006123 7.5e-36 155.6 235 33.2
Sed0008780 Sechium edule HOM05D005178 ORTHO05D006123 1.1e-34 151.8 239 41.8
Nn1g01788 Nelumbo nucifera HOM05D005178 ORTHO05D006123 1.8e-34 151.0 233 36.1
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 1.7e-32 144.4 241 44.0
QL04p059571 Quercus lobata HOM05D005178 ORTHO05D006123 2.3e-32 144.1 248 39.9
Gohir.D08G147400 Gossypium hirsutum HOM05D005178 ORTHO05D006123 5.0e-32 142.9 248 36.7
Hma1.2p1_2972F.1_g331100 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 6.6e-32 142.5 236 38.6
Gohir.A08G126100 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.1e-31 141.7 239 36.4
Gorai.004G153000 Gossypium raimondii HOM05D005178 ORTHO05D006123 1.1e-31 141.7 248 36.3
BcaC02g12521 Brassica carinata HOM05D005178 ORTHO05D006123 1.9e-31 141.0 255 36.9
C04p01700 Brassica napus HOM05D005178 ORTHO05D006123 1.9e-31 141.0 255 36.9
BolC4t21822H Brassica oleracea HOM05D005178 ORTHO05D006123 1.9e-31 141.0 255 36.9
AL4G45600 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 5.6e-31 139.4 247 35.2
PGR042G2135 Punica granatum HOM05D005178 ORTHO05D006123 9.5e-31 138.7 249 37.8
A05p01500 Brassica napus HOM05D005178 ORTHO05D006123 2.1e-30 137.5 255 36.5
BraA05t19146Z Brassica rapa HOM05D005178 ORTHO05D006123 2.1e-30 137.5 255 36.5
AT2G46300 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 6.2e-30 136.0 247 36.8
CiPaw.02G038200 Carya illinoinensis HOM05D005178 ORTHO05D006123 6.2e-30 136.0 232 39.2
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 6.2e-30 136.0 238 36.6
BcaB01g03231 Brassica carinata HOM05D005178 ORTHO05D006123 3.1e-29 133.7 172 37.8
BcaC01g05085 Brassica carinata HOM05D005178 ORTHO05D006123 3.1e-29 133.7 172 37.8
Thhalv10001596m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 5.2e-29 132.9 250 36.0
Hma1.2p1_0384F.1_g141000 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 5.2e-29 132.9 236 37.7
PSO384G3117 Papaver somniferum HOM05D005178 ORTHO05D006123 8.9e-29 132.1 238 39.5
PSO135G0875 Papaver somniferum HOM05D005178 ORTHO05D006123 1.5e-28 131.3 238 39.5
Carub.0004s2900 Capsella rubella HOM05D005178 ORTHO05D006123 2.0e-28 131.0 248 41.9
Lj7A504T56 Lonicera japonica HOM05D005178 ORTHO05D006123 3.4e-28 130.2 234 41.0
Dinv43890 Davidia involucrata HOM05D005178 ORTHO05D006123 7.5e-28 129.0 238 39.5
TWI14G0215 Tripterygium wilfordii HOM05D005178 ORTHO05D006123 1.3e-27 128.3 239 32.2
A03p25540 Brassica napus HOM05D005178 ORTHO05D006123 1.7e-27 127.9 172 36.0
BraA03t11771Z Brassica rapa HOM05D005178 ORTHO05D006123 1.7e-27 127.9 172 36.0
Sabra14G0069000 Salix brachista HOM05D005178 ORTHO05D006123 1.7e-27 127.9 175 39.4
Sp4g28340 Schrenkiella parvula HOM05D005178 ORTHO05D006123 2.2e-27 127.5 252 43.3
C03p30470 Brassica napus HOM05D005178 ORTHO05D006123 3.7e-27 126.7 244 34.0
BolC3t15395H Brassica oleracea HOM05D005178 ORTHO05D006123 3.7e-27 126.7 244 34.0
Prupe.2G183000 Prunus persica HOM05D005178 ORTHO05D006123 6.4e-27 125.9 245 40.4
CARHR141580 Cardamine hirsuta HOM05D005178 ORTHO05D006123 1.4e-26 124.8 245 40.0
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 2.4e-26 124.0 234 30.8
MD07G1144100 Malus domestica HOM05D005178 ORTHO05D006123 2.4e-26 124.0 243 32.9
BcaC01g05079 Brassica carinata HOM05D005178 ORTHO05D006123 3.2e-26 123.6 175 35.4
Aqoxy7G00174 Aquilegia oxysepala HOM05D005178 ORTHO05D006123 1.6e-25 121.3 244 38.1
CSS0038689 Camellia sinensis var. sinensis HOM05D005178 ORTHO05D006123 1.6e-25 121.3 236 37.7
Aa31LG1G10830 Aethionema arabicum HOM05D005178 ORTHO05D006123 4.6e-25 119.8 244 39.8
THA.LOC104802056 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 4.6e-25 119.8 245 36.7
Nitab4.5_0005619g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.3e-24 118.2 235 31.1
CARHR000970 Cardamine hirsuta HOM05D005178 ORTHO05D006123 2.3e-24 117.5 245 32.7
THA.LOC104817334 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 3.0e-24 117.1 243 35.0
MBI06_g02230_MAGBIO Magnolia biondii HOM05D005178 ORTHO05D006123 3.9e-24 116.7 234 37.6
PGSC0003DMG400019400 Solanum tuberosum HOM05D005178 ORTHO05D006123 8.6e-24 115.5 230 36.5
Aa31LG5G850 Aethionema arabicum HOM05D005178 ORTHO05D006123 1.9e-23 114.4 250 30.4
CAN.G1651.2 Capsicum annuum HOM05D005178 ORTHO05D006123 3.3e-23 113.6 235 35.7
CsaV3_6G003970 Cucumis sativus L. HOM05D005178 ORTHO05D006123 3.3e-23 113.6 168 36.3
ClCG08G003840 Citrullus lanatus HOM05D005178 ORTHO05D006123 4.3e-23 113.2 249 36.1
MD01G1075000 Malus domestica HOM05D005178 ORTHO05D006123 5.6e-23 112.8 244 36.1
Oeu008679.1 Olea europaea HOM05D005178 ORTHO05D006123 9.5e-23 112.1 165 36.4
Sc01g0002990 Simmondsia chinensis HOM05D005178 ORTHO05D006123 9.5e-23 112.1 244 37.3
FvH4_7g15840 Fragaria vesca HOM05D005178 ORTHO05D006123 1.6e-22 111.3 247 27.1
Carub.0001s0080 Capsella rubella HOM05D005178 ORTHO05D006123 2.1e-22 110.9 249 33.3
FAN06G0749 Fragaria x ananassa HOM05D005178 ORTHO05D006123 2.1e-22 110.9 247 27.1
FAN06G4203 Fragaria x ananassa HOM05D005178 ORTHO05D006123 2.1e-22 110.9 247 27.1
Nitab4.5_0002262g0140 Nicotiana tabacum HOM05D005178 ORTHO05D006123 3.6e-22 110.2 168 33.9
Nitab4.5_0003779g0030 Nicotiana tabacum HOM05D005178 ORTHO05D006123 3.6e-22 110.2 174 32.2
Ca_09491_v3 Cicer arietinum L. HOM05D005178 ORTHO05D006123 4.7e-22 109.8 243 39.5
Sed0019896 Sechium edule HOM05D005178 ORTHO05D006123 4.7e-22 109.8 244 35.2
Sopen10g005540 Solanum pennellii HOM05D005178 ORTHO05D006123 4.7e-22 109.8 230 34.8
FAN10G1950 Fragaria x ananassa HOM05D005178 ORTHO05D006123 6.2e-22 109.4 247 27.1
Lj1g0025938 Lotus japonicus HOM05D005178 ORTHO05D006123 8.1e-22 109.0 245 32.2
MELO3C029922.2 Cucumis melo HOM05D005178 ORTHO05D006123 1.1e-21 108.6 168 35.7
Rhsim07G0007300 Rhododendron simsii HOM05D005178 ORTHO05D006123 1.1e-21 108.6 240 33.3
FAN03G0560 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.4e-21 108.2 247 27.5
Solyc10g011750.3 Solanum lycopersicum HOM05D005178 ORTHO05D006123 1.4e-21 108.2 230 34.8
A02p24280 Brassica napus HOM05D005178 ORTHO05D006123 3.1e-21 107.1 174 35.6
FAN10G2759 Fragaria x ananassa HOM05D005178 ORTHO05D006123 3.1e-21 107.1 247 26.7
RcHm_v2.0_Chr1g0358651 Rosa chinensis HOM05D005178 ORTHO05D006123 3.1e-21 107.1 238 28.6
AL1G10980 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 4.0e-21 106.7 249 32.5
BraA02t07418Z Brassica rapa HOM05D005178 ORTHO05D006123 5.2e-21 106.3 172 35.5
AT1G01453 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 8.9e-21 105.5 245 33.1
C02p38280 Brassica napus HOM05D005178 ORTHO05D006123 2.0e-20 104.4 172 34.9
BraA10t42331Z Brassica rapa HOM05D005178 ORTHO05D006123 2.0e-20 104.4 250 32.0
BcaC03g16062 Brassica carinata HOM05D005178 ORTHO05D006123 2.6e-20 104.0 172 35.5
Peaxi162Scf00403g00074 Petunia axillaris HOM05D005178 ORTHO05D006123 2.6e-20 104.0 168 35.1
Glyma.19G252900 Glycine max HOM05D005178 ORTHO05D006123 3.4e-20 103.6 242 40.9
Medtr7g116930 Medicago truncatula HOM05D005178 ORTHO05D006123 3.4e-20 103.6 236 36.0
A10p00520 Brassica napus HOM05D005178 ORTHO05D006123 4.4e-20 103.2 250 32.0
Thhalv10009686m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 4.4e-20 103.2 251 34.3
BcaB03g13583 Brassica carinata HOM05D005178 ORTHO05D006123 5.8e-20 102.8 250 32.0
C05p00550 Brassica napus HOM05D005178 ORTHO05D006123 5.8e-20 102.8 250 32.0
BolC5t28844H Brassica oleracea HOM05D005178 ORTHO05D006123 5.8e-20 102.8 250 32.0
BolC2t09843H Brassica oleracea HOM05D005178 ORTHO05D006123 7.5e-20 102.4 172 34.9
Thhalv10028895m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 7.5e-20 102.4 248 31.0
TPR.G4707 Trifolium pratense HOM05D005178 ORTHO05D006123 9.8e-20 102.1 232 41.4
Sp1g00860 Schrenkiella parvula HOM05D005178 ORTHO05D006123 2.2e-19 100.9 239 33.1
Sed0006216 Sechium edule HOM05D005178 ORTHO05D006123 2.2e-19 100.9 175 31.4
CARHR249180 Cardamine hirsuta HOM05D005178 ORTHO05D006123 2.9e-19 100.5 250 30.8
Glyma.03G255300 Glycine max HOM05D005178 ORTHO05D006123 2.9e-19 100.5 237 39.2
THA.LOC104825868 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 2.9e-19 100.5 250 34.8
AT4G01110 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 3.7e-19 100.1 172 34.3
BcaB01g02336 Brassica carinata HOM05D005178 ORTHO05D006123 4.9e-19 99.8 246 30.5
HPP92_005223 Vanilla planifolia HOM05D005178 ORTHO05D006123 4.9e-19 99.8 245 25.3
BolC3t16162H Brassica oleracea HOM05D005178 ORTHO05D006123 6.4e-19 99.4 247 31.6
VMungo0540G0638 Vigna mungo HOM05D005178 ORTHO05D006123 6.4e-19 99.4 169 29.6
BraA03t12361Z Brassica rapa HOM05D005178 ORTHO05D006123 8.3e-19 99.0 246 38.2
AL6G52250 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 1.1e-18 98.6 250 31.2
Nitab4.5_0000522g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.4e-18 98.2 218 30.7
C03p38880 Brassica napus HOM05D005178 ORTHO05D006123 1.9e-18 97.8 246 29.3
Peaxi162Scf00099g00191 Petunia axillaris HOM05D005178 ORTHO05D006123 3.2e-18 97.1 199 35.7
Sp6g01000 Schrenkiella parvula HOM05D005178 ORTHO05D006123 4.1e-18 96.7 171 33.3
BcaC01g06846 Brassica carinata HOM05D005178 ORTHO05D006123 5.4e-18 96.3 247 30.8
Phvul.006G110000 Phaseolus vulgaris HOM05D005178 ORTHO05D006123 7.1e-18 95.9 261 29.5
A03p31890 Brassica napus HOM05D005178 ORTHO05D006123 9.2e-18 95.5 247 31.2
Actinidia10100 Actinidia chinensis HOM05D005178 ORTHO05D006123 2.7e-17 94.0 238 33.6
Carub.0006s3617 Capsella rubella HOM05D005178 ORTHO05D006123 3.5e-17 93.6 255 29.8
SGA_v2.0_scaffold11G05717 Striga asiatica HOM05D005178 ORTHO05D006123 7.8e-17 92.4 240 26.2
Lalb_Chr04g0261721 Lupinus albus HOM05D005178 ORTHO05D006123 1.3e-16 91.7 171 28.1
HPP92_026775 Vanilla planifolia HOM05D005178 ORTHO05D006123 3.3e-15 87.0 245 30.6
Gohir.A12G110633 Gossypium hirsutum HOM05D005178 ORTHO05D006123 4.3e-15 86.7 145 31.0
Psat3g003480 Pisum sativum HOM05D005178 ORTHO05D006123 5.2e-13 79.7 125 32.8
TAR375G0073 Trochodendron aralioides HOM05D005178 ORTHO05D006123 2.6e-12 77.4 106 39.6
vmacro13200 Vaccinium macrocarpon HOM05D005178 ORTHO05D006123 4.4e-12 76.6 198 34.3
SalBow5G4166 Salvia bowleyana HOM05D005178 ORTHO05D006123 1.3e-11 75.1 218 37.6
Dinv12288 Davidia involucrata HOM05D008517 ORTHO05D010482 1.9e-10 71.2 176 25.6
BcaC01g05083 Brassica carinata HOM05D005178 ORTHO05D006123 1.2e-09 68.6 96 37.5
Os02g0261000 Oryza sativa ssp. japonica HOM05D058753 ORTHO05D006123 1.6e-09 68.2 180 23.3
TAR633G1539 Trochodendron aralioides HOM05D000050 ORTHO05D010482 2.7e-09 67.4 167 24.0
AUR62023503 Chenopodium quinoa HOM05D005178 ORTHO05D006123 3.5e-09 67.0 118 33.9
ATR1127G036 Amborella trichopoda HOM05D005178 ORTHO05D006123 1.3e-08 65.1 174 23.6
AUR62004447 Chenopodium quinoa HOM05D005178 ORTHO05D006123 1.7e-08 64.7 118 33.1
Lj2A1104T76 Lonicera japonica HOM05D008517 ORTHO05D010482 5.6e-07 59.7 157 22.9
Cpa.g.sc2.275 Carica papaya HOM05D008517 ORTHO05D010482 9.6e-07 58.9 183 26.2
Rhsim13G0058200 Rhododendron simsii HOM05D008517 ORTHO05D010482 1.6e-06 58.2 157 22.9
SalBow6G2279 Salvia bowleyana HOM05D002137 ORTHO05D002144 2.8e-06 57.4 159 24.5
SalBow6G5101 Salvia bowleyana HOM05D002137 ORTHO05D002144 2.8e-06 57.4 159 24.5
Migut.I01027 Erythranthe guttata HOM05D002137 ORTHO05D002144 4.7e-06 56.6 150 26.0
unitig_88.g27680 Utricularia gibba HOM05D002137 ORTHO05D002144 4.7e-06 56.6 161 25.5


User provided reference genes

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