Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 0.0e+00 1140.9 600 100.0
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 9.0e-225 783.9 608 69.9
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.0e-224 782.7 588 71.3
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 2.2e-223 779.2 599 69.8
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 2.5e-219 765.8 588 69.2
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 5.6e-219 764.6 591 69.0
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 2.1e-218 762.7 593 68.8
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 3.6e-218 761.9 592 68.8
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 4.8e-218 761.5 589 68.8
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 2.4e-217 759.2 589 68.8
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 6.9e-217 757.7 593 67.1
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 1.5e-216 756.5 601 67.7
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 1.5e-216 756.5 598 67.4
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 1.5e-216 756.5 604 67.9
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 2.0e-216 756.1 601 68.1
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 2.0e-216 756.1 598 68.4
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 2.6e-216 755.7 592 68.2
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 4.5e-216 755.0 587 68.3
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 7.6e-216 754.2 590 67.3
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 9.9e-216 753.8 595 69.1
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 2.2e-215 752.7 587 67.6
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 3.8e-215 751.9 591 69.0
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 8.4e-215 750.7 588 68.2
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 8.4e-215 750.7 638 65.7
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 1.1e-214 750.4 584 67.8
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 1.1e-214 750.4 601 67.4
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 1.4e-214 750.0 592 68.1
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 1.4e-214 750.0 599 67.4
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 1.9e-214 749.6 589 68.3
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.9e-214 749.6 592 67.6
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 2.4e-214 749.2 599 67.6
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 2.4e-214 749.2 558 70.6
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 3.2e-214 748.8 601 67.9
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 4.2e-214 748.4 588 68.0
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.2e-214 748.4 587 67.8
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.2e-214 748.4 598 66.6
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 5.4e-214 748.0 563 69.6
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 9.3e-214 747.3 598 66.7
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 1.6e-213 746.5 592 68.1
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 1.6e-213 746.5 586 66.9
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 1.6e-213 746.5 589 66.7
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 2.1e-213 746.1 588 67.9
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 2.1e-213 746.1 587 67.6
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 3.5e-213 745.3 599 67.3
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 3.5e-213 745.3 589 67.6
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 3.5e-213 745.3 590 66.6
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 3.5e-213 745.3 563 69.3
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 4.6e-213 745.0 599 67.8
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.6e-213 745.0 598 66.4
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 6.0e-213 744.6 592 67.9
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 6.0e-213 744.6 576 68.8
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 7.9e-213 744.2 597 67.5
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 7.9e-213 744.2 587 67.5
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 1.0e-212 743.8 601 66.7
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 1.3e-212 743.4 603 66.0
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 1.8e-212 743.0 592 66.2
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 2.3e-212 742.7 589 67.6
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 2.3e-212 742.7 563 69.1
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 3.0e-212 742.3 588 67.5
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 5.1e-212 741.5 592 67.6
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 5.1e-212 741.5 595 67.1
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 6.7e-212 741.1 586 66.4
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 8.7e-212 740.7 590 66.4
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 8.7e-212 740.7 592 66.9
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 1.5e-211 740.0 588 66.7
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 1.9e-211 739.6 580 67.6
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 3.3e-211 738.8 703 59.5
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 7.4e-211 737.6 576 67.2
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 1.3e-210 736.9 557 69.3
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 1.6e-210 736.5 587 65.9
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 4.8e-210 734.9 586 66.4
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 8.1e-210 734.2 586 65.7
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 1.1e-209 733.8 588 66.0
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 9.0e-209 730.7 592 65.5
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 1.5e-208 729.9 588 66.0
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 2.0e-208 729.6 590 66.9
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 7.6e-208 727.6 593 66.3
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 9.9e-208 727.2 595 65.5
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.7e-207 726.5 598 66.1
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 1.7e-207 726.5 596 65.3
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 1.7e-207 726.5 590 65.3
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 2.9e-207 725.7 558 68.5
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 4.9e-207 724.9 591 67.2
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 4.9e-207 724.9 575 67.0
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 5.5e-206 721.5 584 66.1
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 9.3e-206 720.7 591 65.5
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 2.7e-205 719.2 583 65.7
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 3.5e-205 718.8 563 68.0
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 7.9e-205 717.6 600 64.3
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.3e-204 716.8 578 65.7
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 1.8e-204 716.5 593 65.3
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 2.3e-204 716.1 703 57.9
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 3.9e-204 715.3 593 64.8
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 6.7e-204 714.5 576 66.8
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 1.5e-203 713.4 593 65.1
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 3.3e-203 712.2 595 65.9
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 9.6e-203 710.7 600 65.8
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 9.6e-203 710.7 511 72.0
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 2.8e-202 709.1 589 64.9
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.1e-201 707.2 599 63.3
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 2.4e-201 706.1 616 61.9
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 6.9e-201 704.5 599 63.1
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 3.4e-200 702.2 556 66.4
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 4.5e-200 701.8 575 65.9
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 6.0e-197 691.4 586 62.5
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 1.3e-196 690.3 512 69.5
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 2.5e-195 686.0 578 63.5
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 3.3e-195 685.6 599 61.1
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 4.3e-195 685.3 597 64.0
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 9.7e-195 684.1 552 65.6
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 2.6e-192 676.0 552 65.0
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 1.4e-190 670.2 599 62.3
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 1.4e-188 663.7 590 61.5
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 1.1e-187 660.6 556 62.4
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.1e-185 654.1 599 60.9
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 3.8e-183 645.6 555 62.3
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 6.1e-181 638.3 597 59.6
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 3.9e-180 635.6 602 59.6
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.1e-179 634.0 602 59.8
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 1.1e-171 607.4 529 62.0
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 4.5e-160 568.9 507 62.1
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 1.1e-158 564.3 434 70.0
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.2e-158 562.4 483 62.3
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 3.0e-156 556.2 451 65.9
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 8.6e-151 538.1 530 57.2
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 9.2e-145 518.1 507 59.0
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 3.7e-138 496.1 376 70.5
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 5.4e-129 465.7 372 66.1
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 2.1e-128 463.8 531 49.0
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 3.9e-119 433.0 319 70.8
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 2.1e-109 400.6 582 47.4
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 5.3e-108 396.0 252 78.2
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.0e-103 381.7 401 55.9
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 4.0e-100 369.8 514 44.0
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 1.1e-97 361.7 555 41.1
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.6e-96 357.8 325 61.8
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 2.9e-90 337.0 237 70.5
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 7.7e-75 285.8 182 75.8
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.9e-66 257.3 230 63.0
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 2.7e-64 250.8 208 63.5
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 1.4e-63 248.4 357 40.9
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 6.7e-63 246.1 246 52.4
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 3.0e-47 194.1 264 42.8
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 7.7e-43 179.5 143 64.3
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 2.8e-32 144.4 137 60.6
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 3.4e-30 137.5 106 64.2
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 8.1e-16 89.7 94 50.0
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 4.0e-15 87.4 84 60.7
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 6.8e-15 86.7 52 75.0
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 6.8e-15 86.7 52 75.0
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 8.9e-15 86.3 50 80.0
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 2.6e-14 84.7 52 86.5
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 3.4e-14 84.3 105 41.9
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.4e-14 84.0 207 34.3
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 9.2e-12 76.3 103 39.8
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 1.5e-09 68.9 60 63.3
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 1.5e-09 68.9 60 63.3
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 1.6e-08 65.5 60 61.7
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 2.1e-08 65.1 57 52.6
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 8.1e-08 63.2 59 61.0
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.1e-07 62.8 67 52.2
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 4.0e-07 60.8 30 80.0
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 4.0e-07 60.8 30 80.0
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 5.2e-07 60.5 259 30.5
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 2.0e-06 58.5 43 58.1


User provided reference genes

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