Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI12657 Sapria himalayana HOM05D003174 ORTHO05D003439 9.0e-140 500.4 248 100.0
CSS0007124 Camellia sinensis var. sinensis HOM05D003174 ORTHO05D003439 2.2e-21 107.1 219 31.1
Thecc.05G042400 Theobroma cacao HOM05D003174 ORTHO05D003439 6.0e-19 99.0 151 37.7
Gohir.A09G157600 Gossypium hirsutum HOM05D003174 ORTHO05D003439 1.0e-18 98.2 140 37.9
Manes.08G078100 Manihot esculenta HOM05D003174 ORTHO05D003439 2.3e-18 97.1 147 36.7
Gorai.006G174400 Gossypium raimondii HOM05D003174 ORTHO05D003439 1.1e-17 94.7 143 35.0
Duzib106G0893 Durio zibethinus HOM05D003174 ORTHO05D003439 1.9e-17 94.0 158 38.6
Dinv35623 Davidia involucrata HOM05D003174 ORTHO05D003439 5.6e-17 92.4 156 40.4
GSVIVG01034205001 Vitis vinifera HOM05D003174 ORTHO05D003439 7.4e-17 92.0 144 40.3
Peaxi162Scf00165g01840 Petunia axillaris HOM05D003174 ORTHO05D003439 9.6e-17 91.7 184 36.4
COL.COLO4_14835 Corchorus olitorius HOM05D003174 ORTHO05D003439 2.8e-16 90.1 155 34.8
Eucgr.A00550 Eucalyptus grandis HOM05D003174 ORTHO05D003439 3.6e-16 89.7 68 57.4
Gohir.D09G152900 Gossypium hirsutum HOM05D003174 ORTHO05D003439 3.6e-16 89.7 90 47.8
Medtr1g069020 Medicago truncatula HOM05D003174 ORTHO05D003439 3.6e-16 89.7 100 46.0
Actinidia11253 Actinidia chinensis HOM05D003174 ORTHO05D003439 4.8e-16 89.4 128 43.0
TAR629G3457 Trochodendron aralioides HOM05D003174 ORTHO05D003439 6.2e-16 89.0 94 44.7
MD04G1124900 Malus domestica HOM05D003174 ORTHO05D003439 8.1e-16 88.6 156 37.2
Ciclev10011079m.g Citrus clementina HOM05D003174 ORTHO05D003439 1.8e-15 87.4 69 58.0
TWI53G0288 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 4.0e-15 86.3 129 38.0
QL07p031124 Quercus lobata HOM05D003174 ORTHO05D003439 5.3e-15 85.9 77 50.6
QL07p047847 Quercus lobata HOM05D003174 ORTHO05D003439 5.3e-15 85.9 77 50.6
vmacro08698 Vaccinium macrocarpon HOM05D003174 ORTHO05D003439 5.3e-15 85.9 125 41.6
arahy.Tifrunner.gnm1.ann1.6UZP51 Arachis hypogaea HOM05D003174 ORTHO05D003439 9.0e-15 85.1 92 45.7
Migut.C00381 Erythranthe guttata HOM05D003174 ORTHO05D003439 9.0e-15 85.1 122 37.7
Prupe.6G252000 Prunus persica HOM05D003174 ORTHO05D003439 1.2e-14 84.7 152 37.5
Sabra04G0051000 Salix brachista HOM05D003174 ORTHO05D003439 1.2e-14 84.7 133 37.6
Sed0000072 Sechium edule HOM05D003174 ORTHO05D003439 1.5e-14 84.3 112 39.3
Psat0s2930g0040 Pisum sativum HOM05D003174 ORTHO05D003439 2.0e-14 84.0 102 44.1
Cfa017411 Carpinus fangiana HOM05D003174 ORTHO05D003439 2.6e-14 83.6 68 52.9
Nitab4.5_0000761g0050 Nicotiana tabacum HOM05D003174 ORTHO05D003439 5.8e-14 82.4 94 44.7
arahy.Tifrunner.gnm1.ann1.IJS1VI Arachis hypogaea HOM05D003174 ORTHO05D003439 7.6e-14 82.0 78 50.0
Potri.004G077400 Populus trichocarpa HOM05D003174 ORTHO05D003439 7.6e-14 82.0 103 40.8
TPR.G29857 Trifolium pratense HOM05D003174 ORTHO05D003439 7.6e-14 82.0 76 51.3
MSTRG.924 Avicennia marina HOM05D003174 ORTHO05D003439 9.9e-14 81.6 107 42.1
MELO3C003115.2 Cucumis melo HOM05D003174 ORTHO05D003439 9.9e-14 81.6 86 44.2
Haze_20757 Corylus avellana HOM05D003174 ORTHO05D003439 1.3e-13 81.3 66 54.5
Lj1g0011268 Lotus japonicus HOM05D003174 ORTHO05D003439 1.3e-13 81.3 82 47.6
CAN.G97.37 Capsicum annuum HOM05D003174 ORTHO05D003439 1.7e-13 80.9 84 45.2
Nitab4.5_0004091g0070 Nicotiana tabacum HOM05D003174 ORTHO05D003439 1.7e-13 80.9 80 47.5
SGA_v2.0_scaffold6G03139 Striga asiatica HOM05D003174 ORTHO05D003439 1.7e-13 80.9 148 32.4
THA.LOC104816287 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 1.7e-13 80.9 105 41.0
Glyma.13G131100 Glycine max HOM05D003174 ORTHO05D003439 2.9e-13 80.1 115 38.3
PGSC0003DMG400008848 Solanum tuberosum HOM05D003174 ORTHO05D003439 2.9e-13 80.1 191 30.9
arahy.Tifrunner.gnm1.ann1.Y7W1NJ Arachis hypogaea HOM05D003174 ORTHO05D003439 3.8e-13 79.7 155 32.9
Lj3A970G57 Lonicera japonica HOM05D003174 ORTHO05D003439 3.8e-13 79.7 69 53.6
Sopen09g005270 Solanum pennellii HOM05D003174 ORTHO05D003439 3.8e-13 79.7 192 31.2
GSVIVG01013578001 Vitis vinifera HOM05D003174 ORTHO05D003439 3.8e-13 79.7 78 48.7
Lalb_Chr06g0170971 Lupinus albus HOM05D003174 ORTHO05D003439 4.9e-13 79.3 66 53.0
arahy.Tifrunner.gnm1.ann1.FD13B1 Arachis hypogaea HOM05D003174 ORTHO05D003439 6.4e-13 79.0 153 34.0
CsaV3_4G024810 Cucumis sativus L. HOM05D003174 ORTHO05D003439 6.4e-13 79.0 88 42.0
Glyma.10G043400 Glycine max HOM05D003174 ORTHO05D003439 6.4e-13 79.0 76 47.4
Hma1.2p1_0324F.1_g125650 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 6.4e-13 79.0 86 43.0
Hma1.2p1_3259F.1_g334646 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 6.4e-13 79.0 86 43.0
Rhsim05G0189700 Rhododendron simsii HOM05D003174 ORTHO05D003439 6.4e-13 79.0 142 33.8
Solyc09g010550.4 Solanum lycopersicum HOM05D003174 ORTHO05D003439 6.4e-13 79.0 192 30.7
TAR623G0639 Trochodendron aralioides HOM05D003174 ORTHO05D003439 6.4e-13 79.0 94 43.6
Phvul.007G157300 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 8.4e-13 78.6 85 47.1
HanXRQChr08g0226171 Helianthus annuus HOM05D003174 ORTHO05D003439 1.1e-12 78.2 63 57.1
Actinidia35877 Actinidia chinensis HOM05D003174 ORTHO05D003439 2.4e-12 77.0 91 42.9
Cpa.g.sc260.5 Carica papaya HOM05D003174 ORTHO05D003439 2.4e-12 77.0 61 55.7
Nn2g10415 Nelumbo nucifera HOM05D003174 ORTHO05D003439 2.4e-12 77.0 134 35.1
PSO532G0060 Papaver somniferum HOM05D003174 ORTHO05D003439 2.4e-12 77.0 93 40.9
Aqoxy2G01410 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 4.2e-12 76.3 114 40.4
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 4.2e-12 76.3 114 40.4
VMungo1127G0815 Vigna mungo HOM05D003174 ORTHO05D003439 5.5e-12 75.9 115 39.1
CsaV3_4G003560 Cucumis sativus L. HOM05D003174 ORTHO05D003439 7.1e-12 75.5 89 47.2
Medtr1g069015 Medicago truncatula HOM05D003174 ORTHO05D003439 7.1e-12 75.5 88 44.3
Dinv22692 Davidia involucrata HOM05D003174 ORTHO05D003439 9.3e-12 75.1 86 44.2
ECA233G2094 Erigeron canadensis HOM05D003174 ORTHO05D003439 9.3e-12 75.1 62 54.8
PGR004G2807 Punica granatum HOM05D003174 ORTHO05D003439 9.3e-12 75.1 66 47.0
Sed0019898 Sechium edule HOM05D003174 ORTHO05D003439 9.3e-12 75.1 98 43.9
Aa31LG1G22280 Aethionema arabicum HOM05D003174 ORTHO05D003439 1.6e-11 74.3 136 35.3
Cfa015779 Carpinus fangiana HOM05D003174 ORTHO05D003439 1.6e-11 74.3 90 43.3
MELO3C017697.2 Cucumis melo HOM05D003174 ORTHO05D003439 1.6e-11 74.3 59 55.9
Gohir.A08G074200 Gossypium hirsutum HOM05D003174 ORTHO05D003439 1.6e-11 74.3 84 46.4
PGSC0003DMG400027274 Solanum tuberosum HOM05D003174 ORTHO05D003439 1.6e-11 74.3 62 56.5
Gorai.004G087600 Gossypium raimondii HOM05D003174 ORTHO05D003439 2.1e-11 73.9 65 55.4
Gohir.D08G083400 Gossypium hirsutum HOM05D003174 ORTHO05D003439 2.7e-11 73.6 65 55.4
Sc02g0004510 Simmondsia chinensis HOM05D003174 ORTHO05D003439 2.7e-11 73.6 67 49.3
Solyc04g015710.3 Solanum lycopersicum HOM05D003174 ORTHO05D003439 2.7e-11 73.6 62 56.5
Sopen04g007790 Solanum pennellii HOM05D003174 ORTHO05D003439 2.7e-11 73.6 62 56.5
BcaB04g20191 Brassica carinata HOM05D003174 ORTHO05D003439 3.5e-11 73.2 58 56.9
CAN.G74.6 Capsicum annuum HOM05D003174 ORTHO05D003439 3.5e-11 73.2 62 56.5
HanXRQChr13g0395041 Helianthus annuus HOM05D003174 ORTHO05D003439 3.5e-11 73.2 64 54.7
Manes.04G049000 Manihot esculenta HOM05D003174 ORTHO05D003439 3.5e-11 73.2 64 53.1
Nitab4.5_0004701g0030 Nicotiana tabacum HOM05D003174 ORTHO05D003439 3.5e-11 73.2 62 54.8
TAR362G1036 Trochodendron aralioides HOM05D003174 ORTHO05D003439 3.5e-11 73.2 94 44.7
MBI17_g16533_MAGBIO Magnolia biondii HOM05D003174 ORTHO05D003439 6.0e-11 72.4 80 45.0
PSO339G3795 Papaver somniferum HOM05D003174 ORTHO05D003439 7.9e-11 72.0 129 34.1
TWI15G0304 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 7.9e-11 72.0 89 43.8
TWI15G0472 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 7.9e-11 72.0 89 43.8
Thhalv10023956m.g Eutrema salsugineum HOM05D001877 ORTHO05D001886 1.0e-10 71.6 98 38.8
Nitab4.5_0000847g0080 Nicotiana tabacum HOM05D003174 ORTHO05D003439 1.0e-10 71.6 62 54.8
PSO384G3329 Papaver somniferum HOM05D035235 ORTHO05D003439 1.0e-10 71.6 129 33.3
Sp2g05410 Schrenkiella parvula HOM05D001877 ORTHO05D001886 1.0e-10 71.6 103 35.9
unitig_736.g22251 Utricularia gibba HOM05D003174 ORTHO05D003439 1.0e-10 71.6 122 34.4
MD04G1038200 Malus domestica HOM05D003174 ORTHO05D003439 1.3e-10 71.2 90 41.1
CDE07G1712 Ceratophyllum demersum HOM05D003174 ORTHO05D003439 1.8e-10 70.9 107 35.5
Duzib093G0200 Durio zibethinus HOM05D003174 ORTHO05D003439 1.8e-10 70.9 142 38.0
CiPaw.02G056500 Carya illinoinensis HOM05D003174 ORTHO05D003439 2.3e-10 70.5 81 43.2
Migut.H00512 Erythranthe guttata HOM05D003174 ORTHO05D003439 2.3e-10 70.5 65 50.8
PSO541G3184 Papaver somniferum HOM05D003174 ORTHO05D003439 3.0e-10 70.1 104 40.4
Thecc.05G002600 Theobroma cacao HOM05D003174 ORTHO05D003439 3.0e-10 70.1 66 53.0
ECA233G3488 Erigeron canadensis HOM05D003174 ORTHO05D003439 3.9e-10 69.7 59 54.2
CANSAT21G1894 Cannabis sativa HOM05D003174 ORTHO05D003439 5.1e-10 69.3 61 54.1
Nn1g09826 Nelumbo nucifera HOM05D003174 ORTHO05D003439 5.1e-10 69.3 62 50.0
TPR.G21831 Trifolium pratense HOM05D000319 ORTHO05D003439 5.1e-10 69.3 125 32.0
Eucgr.I00627 Eucalyptus grandis HOM05D003174 ORTHO05D003439 6.7e-10 68.9 60 53.3
Sp6g39990 Schrenkiella parvula HOM05D003174 ORTHO05D003439 6.7e-10 68.9 70 42.9
BraA01t02958Z Brassica rapa HOM05D001877 ORTHO05D001886 8.7e-10 68.6 59 54.2
Ciclev10021601m.g Citrus clementina HOM05D003174 ORTHO05D003439 8.7e-10 68.6 67 47.8
THA.LOC104802302 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 8.7e-10 68.6 63 49.2
TPR.G37089 Trifolium pratense HOM05D003174 ORTHO05D003439 8.7e-10 68.6 125 32.0
BcaC09g49501 Brassica carinata HOM05D003174 ORTHO05D003439 1.1e-09 68.2 59 50.8
BolC1t03544H Brassica oleracea HOM05D003174 ORTHO05D003439 1.1e-09 68.2 59 50.8
BraA02t04720Z Brassica rapa HOM05D003174 ORTHO05D003439 1.1e-09 68.2 69 50.7
QL10p045460 Quercus lobata HOM05D003174 ORTHO05D003439 1.1e-09 68.2 83 41.0
TPR.G23103 Trifolium pratense HOM05D003174 ORTHO05D003439 1.1e-09 68.2 66 45.5
AL2G18170 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 1.5e-09 67.8 59 49.2
Thhalv10015290m.g Eutrema salsugineum HOM05D003174 ORTHO05D003439 1.5e-09 67.8 87 40.2
Lj3g0014619 Lotus japonicus HOM05D003174 ORTHO05D003439 1.5e-09 67.8 58 55.2
RcHm_v2.0_Chr4g0407561 Rosa chinensis HOM05D003174 ORTHO05D003439 1.5e-09 67.8 103 34.0
Atru.chr3.1551 Acer truncatum HOM05D003174 ORTHO05D003439 1.9e-09 67.4 67 46.3
Aqoxy4G02973 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 1.9e-09 67.4 101 38.6
Potri.017G036100 Populus trichocarpa HOM05D003174 ORTHO05D003439 1.9e-09 67.4 81 44.4
FvH4_4g11320 Fragaria vesca HOM05D003174 ORTHO05D003439 2.5e-09 67.0 96 35.4
Cc06_g06750 Coffea canephora HOM05D003174 ORTHO05D003439 3.3e-09 66.6 81 40.7
COL.COLO4_20117 Corchorus olitorius HOM05D003174 ORTHO05D003439 3.3e-09 66.6 66 50.0
Peaxi162Scf00066g01134 Petunia axillaris HOM05D003174 ORTHO05D003439 3.3e-09 66.6 167 31.7
Potri.007G124300 Populus trichocarpa HOM05D003174 ORTHO05D003439 3.3e-09 66.6 63 50.8
AT1G58210 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 4.3e-09 66.2 59 49.2
EL10Ac4g08337 Beta vulgaris HOM05D003174 ORTHO05D003439 4.3e-09 66.2 78 44.9
BcaC03g13058 Brassica carinata HOM05D003174 ORTHO05D003439 4.3e-09 66.2 102 35.3
FAN07G2661 Fragaria x ananassa HOM05D003174 ORTHO05D003439 4.3e-09 66.2 96 34.4
HanXRQChr13g0395031 Helianthus annuus HOM05D003174 ORTHO05D003439 4.3e-09 66.2 64 50.0
SGA_v2.0_scaffold204G41637 Striga asiatica HOM05D003174 ORTHO05D003439 4.3e-09 66.2 82 41.5
FAN17G0897 Fragaria x ananassa HOM05D003174 ORTHO05D003439 5.6e-09 65.9 97 34.0
Lsat_1_v5_gn_2_36541 Lactuca sativa HOM05D003174 ORTHO05D003439 5.6e-09 65.9 58 53.4
SHI29135 Sapria himalayana HOM05D003174 ORTHO05D003439 5.6e-09 65.9 58 51.7
PSO675G7155 Papaver somniferum HOM05D003174 ORTHO05D003439 7.4e-09 65.5 87 41.4
AL6G11780 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 9.6e-09 65.1 81 39.5
AT5G02520 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 9.6e-09 65.1 70 42.9
CARHR053810 Cardamine hirsuta HOM05D003174 ORTHO05D003439 9.6e-09 65.1 58 48.3
Atru.chr3.120 Acer truncatum HOM05D003174 ORTHO05D003439 1.3e-08 64.7 59 49.2
Aa31LG2G10940 Aethionema arabicum HOM05D003174 ORTHO05D003439 1.6e-08 64.3 59 44.1
C02p00500 Brassica napus HOM05D003174 ORTHO05D003439 1.6e-08 64.3 117 33.3
BolC2t06049H Brassica oleracea HOM05D003174 ORTHO05D003439 1.6e-08 64.3 117 32.5
Medtr5g040080 Medicago truncatula HOM05D003174 ORTHO05D003439 1.6e-08 64.3 92 37.0
Sabra07G0100600 Salix brachista HOM05D003174 ORTHO05D003439 1.6e-08 64.3 63 52.4
EL10Ac4g08332 Beta vulgaris HOM05D003174 ORTHO05D003439 2.1e-08 63.9 81 43.2
Ca_04778_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 2.1e-08 63.9 125 32.8
CANSAT01G0457 Cannabis sativa HOM05D003174 ORTHO05D003439 2.8e-08 63.5 118 31.4
Carub.0006s0132 Capsella rubella HOM05D003174 ORTHO05D003439 2.8e-08 63.5 118 33.9
CARHR210840 Cardamine hirsuta HOM05D003174 ORTHO05D003439 2.8e-08 63.5 67 43.3
Haze_00715 Corylus avellana HOM05D003174 ORTHO05D003439 2.8e-08 63.5 66 50.0
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 2.8e-08 63.5 45 66.7
AUR62043191 Chenopodium quinoa HOM05D003174 ORTHO05D003439 4.8e-08 62.8 89 41.6
TPR.G22580 Trifolium pratense HOM05D003174 ORTHO05D003439 4.8e-08 62.8 139 30.9
Medtr7g039520 Medicago truncatula HOM05D003174 ORTHO05D003439 6.2e-08 62.4 92 37.0
ClCG07G015840 Citrullus lanatus HOM05D003174 ORTHO05D003439 8.1e-08 62.0 146 31.5
Cc06_g02840 Coffea canephora HOM05D003174 ORTHO05D003439 8.1e-08 62.0 47 66.0
RcHm_v2.0_Chr3g0467041 Rosa chinensis HOM05D003174 ORTHO05D003439 8.1e-08 62.0 109 37.6
HPP92_001613 Vanilla planifolia HOM05D003174 ORTHO05D003439 1.1e-07 61.6 64 45.3
FAN09G4813 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.8e-07 60.8 112 36.6
arahy.Tifrunner.gnm1.ann1.4Q6X4E Arachis hypogaea HOM05D003174 ORTHO05D003439 2.4e-07 60.5 47 57.4
DCAR_025649 Daucus carota HOM05D003174 ORTHO05D003439 2.4e-07 60.5 86 36.0
Psat2g183360 Pisum sativum HOM05D003174 ORTHO05D003439 2.4e-07 60.5 63 47.6
BcaB05g21888 Brassica carinata HOM05D003174 ORTHO05D003439 3.1e-07 60.1 99 35.4
Ca_27793_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 5.3e-07 59.3 48 52.1
FvH4_6g25230 Fragaria vesca HOM05D003174 ORTHO05D003439 5.3e-07 59.3 75 41.3
FAN02G1934 Fragaria x ananassa HOM05D003174 ORTHO05D003439 5.3e-07 59.3 45 55.6
FAN05G2164 Fragaria x ananassa HOM05D003174 ORTHO05D003439 5.3e-07 59.3 45 55.6
FAN09G4560 Fragaria x ananassa HOM05D003174 ORTHO05D003439 5.3e-07 59.3 45 55.6
FAN14G5980 Fragaria x ananassa HOM05D003174 ORTHO05D003439 5.3e-07 59.3 45 55.6
PGR083G2046 Punica granatum HOM05D003174 ORTHO05D003439 5.3e-07 59.3 123 32.5
Rhsim02G0075700 Rhododendron simsii HOM05D003174 ORTHO05D003439 5.3e-07 59.3 139 34.5
AUR62019568 Chenopodium quinoa HOM05D003174 ORTHO05D003439 6.9e-07 58.9 86 43.0
Haze_00723 Corylus avellana HOM05D000268 ORTHO05D000261 6.9e-07 58.9 89 39.3
Phvul.011G086100 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 9.0e-07 58.5 99 34.3
arahy.Tifrunner.gnm1.ann1.SHBY5H Arachis hypogaea HOM05D003174 ORTHO05D003439 1.2e-06 58.2 48 54.2
ATR0019G037 Amborella trichopoda HOM05D003174 ORTHO05D003439 1.5e-06 57.8 74 40.5
FAN05G5174 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.6e-06 57.0 75 40.0


User provided reference genes

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