Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 1.1e-218 763.1 386 100.0
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 2.0e-105 386.7 367 56.9
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 9.5e-103 377.9 367 57.2
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 1.8e-101 373.6 364 56.3
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 9.9e-100 367.9 367 56.1
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 1.3e-99 367.5 369 56.4
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.7e-99 367.1 366 55.7
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.2e-99 366.7 366 56.0
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.9e-99 366.3 366 56.0
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 3.7e-99 365.9 367 54.8
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 9.2e-98 361.3 366 54.4
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 7.8e-97 358.2 366 55.2
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 1.9e-95 353.6 367 53.1
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 5.6e-95 352.1 367 53.7
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 7.3e-95 351.7 367 52.6
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 7.3e-95 351.7 367 54.5
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 9.5e-95 351.3 366 53.8
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 1.4e-93 347.4 368 53.8
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 2.4e-93 346.7 364 54.1
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 8.9e-93 344.7 367 52.3
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 8.9e-93 344.7 366 53.3
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 2.0e-92 343.6 374 51.1
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 2.0e-92 343.6 375 52.3
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 7.6e-92 341.7 366 50.0
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 7.6e-92 341.7 365 52.1
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 7.6e-92 341.7 366 52.5
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 1.3e-91 340.9 361 53.2
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 2.2e-91 340.1 418 49.0
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 2.2e-91 340.1 367 50.7
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 2.9e-91 339.7 361 52.6
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 2.9e-91 339.7 361 52.4
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 4.9e-91 339.0 366 50.0
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 6.4e-91 338.6 367 50.4
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 6.4e-91 338.6 371 52.3
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 8.4e-91 338.2 365 51.5
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.4e-90 337.4 390 49.7
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 2.4e-90 336.7 361 53.2
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 2.4e-90 336.7 365 51.0
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 2.4e-90 336.7 361 52.6
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 3.2e-90 336.3 361 52.1
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 3.2e-90 336.3 365 51.0
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 4.1e-90 335.9 367 51.5
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 4.1e-90 335.9 368 51.4
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 4.1e-90 335.9 365 51.5
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 5.4e-90 335.5 361 52.1
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 5.4e-90 335.5 365 51.2
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 7.1e-90 335.1 361 52.6
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 7.1e-90 335.1 390 49.5
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 1.2e-89 334.3 368 50.0
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.2e-89 334.3 390 49.5
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 1.6e-89 334.0 379 50.9
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 1.6e-89 334.0 366 51.1
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 2.7e-89 333.2 372 52.2
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 3.5e-89 332.8 368 51.9
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 3.5e-89 332.8 367 49.6
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 4.6e-89 332.4 361 52.1
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 1.0e-88 331.3 360 51.1
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 1.0e-88 331.3 365 49.6
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 1.7e-88 330.5 366 51.4
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 3.9e-88 329.3 363 52.9
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 8.7e-88 328.2 372 49.7
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 1.1e-87 327.8 366 51.4
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 1.1e-87 327.8 375 50.4
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 1.1e-87 327.8 364 50.5
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.1e-87 327.8 361 51.8
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 1.5e-87 327.4 366 51.6
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 4.3e-87 325.9 361 52.4
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 1.2e-86 324.3 357 52.1
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 1.6e-86 323.9 359 51.0
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 2.1e-86 323.6 375 50.4
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 8.1e-86 321.6 363 49.0
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 1.1e-85 321.2 353 51.8
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 1.1e-85 321.2 367 50.4
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.8e-85 320.5 399 48.1
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 2.4e-85 320.1 356 50.8
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 2.4e-85 320.1 355 51.8
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 3.1e-85 319.7 395 47.1
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 5.2e-85 318.9 369 50.4
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 5.2e-85 318.9 369 50.4
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 1.2e-84 317.8 373 49.6
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 2.0e-84 317.0 355 51.0
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 4.9e-83 312.4 366 49.7
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 1.4e-82 310.8 327 52.3
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 1.9e-82 310.5 362 51.4
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 3.2e-82 309.7 321 53.6
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 5.4e-82 308.9 365 47.1
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 9.3e-82 308.1 360 48.9
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 9.3e-82 308.1 384 47.7
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 2.7e-81 306.6 365 48.2
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 2.7e-81 306.6 365 48.2
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.6e-81 305.8 365 47.9
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 3.0e-80 303.1 366 48.1
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 5.1e-80 302.4 373 46.9
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 2.5e-79 300.1 322 50.3
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 5.6e-79 298.9 367 47.1
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 3.1e-77 293.1 345 47.2
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 4.0e-77 292.7 380 44.7
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 4.5e-76 289.3 402 45.0
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 2.9e-75 286.6 368 46.2
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 1.1e-74 284.6 381 45.4
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 4.2e-74 282.7 353 45.9
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 1.2e-73 281.2 320 51.9
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.9e-72 276.2 374 47.1
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 5.1e-72 275.8 293 52.6
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 5.1e-72 275.8 315 51.7
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 6.2e-70 268.9 304 52.6
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 8.1e-70 268.5 298 51.3
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 5.8e-68 262.3 300 48.0
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.3e-67 261.2 367 43.3
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.8e-67 259.6 288 52.1
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 6.4e-67 258.8 366 44.0
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 2.5e-63 246.9 340 43.5
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 4.3e-63 246.1 336 41.1
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 2.8e-62 243.4 324 43.8
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 4.8e-62 242.7 287 46.3
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 3.8e-59 233.0 310 40.3
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 3.8e-59 233.0 337 39.8
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 4.2e-58 229.6 341 38.7
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 4.2e-58 229.6 304 44.4
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 4.8e-54 216.1 348 40.8
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 5.5e-50 202.6 348 39.4
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 7.4e-47 192.2 213 51.6
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 5.3e-45 186.0 278 45.0
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 5.5e-42 176.0 141 62.4
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 2.8e-38 163.7 136 58.1
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 2.0e-31 141.0 130 56.2
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.4e-29 134.0 155 49.0
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 8.5e-27 125.6 327 29.1
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.7e-25 119.8 82 64.6
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.0e-25 119.0 82 63.4
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 3.7e-22 110.2 138 45.7
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 3.1e-21 107.1 382 26.7
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 5.3e-21 106.3 106 52.8
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.6e-17 94.7 90 54.4
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 3.6e-17 93.6 119 46.2
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.0e-17 92.4 86 55.8
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.0e-15 87.8 89 51.7
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 7.5e-15 85.9 326 25.8
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.7e-14 84.7 102 46.1
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-12 78.6 82 51.2
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.6e-12 78.2 81 51.9
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.5e-12 76.6 81 50.6
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.5e-12 76.6 81 50.6
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.3e-11 75.1 82 50.0
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.7e-11 74.7 81 49.4
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.7e-11 74.7 81 49.4
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.3e-11 74.3 70 54.3
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 2.3e-11 74.3 79 51.9
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.8e-11 73.6 82 48.8
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 1.5e-10 71.6 45 64.4
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-10 71.6 82 48.8
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.5e-10 70.9 76 50.0
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 6.1e-09 66.2 335 25.1
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 6.1e-09 66.2 87 48.3
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 4.9e-06 56.6 68 51.5


User provided reference genes

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