Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI12573 Sapria himalayana HOM05D003265 ORTHO05D003819 0.0e+00 1344.7 745 100.0
Manes.08G003400 Manihot esculenta HOM05D003265 ORTHO05D003819 5.1e-44 183.7 689 32.2
Potri.016G085600 Populus trichocarpa HOM05D003265 ORTHO05D003819 3.6e-42 177.6 720 30.4
Cfa017508 Carpinus fangiana HOM05D003265 ORTHO05D003819 4.8e-42 177.2 684 32.9
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 9.0e-41 172.9 783 31.2
Haze_20650 Corylus avellana HOM05D003265 ORTHO05D003819 2.0e-40 171.8 682 33.1
Atru.chr8.2556 Acer truncatum HOM05D003265 ORTHO05D003819 2.4e-38 164.9 668 32.0
Gohir.D01G205900 Gossypium hirsutum HOM05D003265 ORTHO05D003819 3.2e-38 164.5 641 33.5
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 5.4e-38 163.7 716 32.1
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 7.9e-37 159.8 734 31.5
CiPaw.10G137500 Carya illinoinensis HOM05D003265 ORTHO05D003819 8.7e-36 156.4 666 32.9
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 1.1e-35 156.0 684 32.0
Eucgr.A01175 Eucalyptus grandis HOM05D003265 ORTHO05D003819 2.5e-35 154.8 750 30.7
Sabra06G0103300 Salix brachista HOM05D003265 ORTHO05D003819 4.3e-35 154.1 739 32.2
TAR633G0548 Trochodendron aralioides HOM05D003265 ORTHO05D003819 5.6e-35 153.7 706 31.3
TWI74G1096 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 2.8e-34 151.4 660 30.0
TAR623G0684 Trochodendron aralioides HOM05D003265 ORTHO05D003819 2.4e-33 148.3 619 31.5
Thecc.05G053900 Theobroma cacao HOM05D003265 ORTHO05D003819 9.0e-33 146.4 700 30.7
Potri.006G131650 Populus trichocarpa HOM05D003265 ORTHO05D003819 1.2e-32 146.0 718 31.6
COL.COLO4_27082 Corchorus olitorius HOM05D003265 ORTHO05D003819 4.9e-31 140.6 747 29.0
CSS0020316 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 6.4e-31 140.2 629 29.3
QL07p045275 Quercus lobata HOM05D003265 ORTHO05D003819 1.1e-30 139.4 636 30.8
Duzib106G1383 Durio zibethinus HOM05D003265 ORTHO05D003819 4.2e-30 137.5 699 30.2
MD04G1104400 Malus domestica HOM05D003265 ORTHO05D003819 9.3e-30 136.3 677 29.1
Sabra16G0092200 Salix brachista HOM05D003265 ORTHO05D003819 3.9e-28 131.0 641 30.0
MELO3C009314.2 Cucumis melo HOM05D003265 ORTHO05D003819 6.7e-28 130.2 624 30.3
MD12G1124300 Malus domestica HOM05D003265 ORTHO05D003819 1.1e-27 129.4 671 29.5
FvH4_6g15330 Fragaria vesca HOM05D003265 ORTHO05D003819 1.5e-27 129.0 656 29.9
Dinv37252 Davidia involucrata HOM05D003265 ORTHO05D003819 2.5e-27 128.3 532 31.6
Migut.L01659 Erythranthe guttata HOM05D003265 ORTHO05D003819 2.5e-27 128.3 638 29.0
RcHm_v2.0_Chr3g0468801 Rosa chinensis HOM05D003265 ORTHO05D003819 3.3e-27 127.9 719 29.6
Phvul.001G174800 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 5.7e-27 127.1 638 29.9
MSTRG.26726 Avicennia marina HOM05D003265 ORTHO05D003819 2.8e-26 124.8 546 33.2
Glyma.03G177900 Glycine max HOM05D003265 ORTHO05D003819 5.3e-25 120.6 632 29.4
CsaV3_3G035550 Cucumis sativus L. HOM05D003265 ORTHO05D003819 6.9e-25 120.2 630 28.6
Aqoxy3G02606 Aquilegia oxysepala HOM05D003265 ORTHO05D003819 7.6e-24 116.7 620 31.0
ClCG10G020560 Citrullus lanatus HOM05D003265 ORTHO05D003819 7.6e-24 116.7 572 30.1
TWI77G0315 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 2.2e-23 115.2 628 31.1
FAN05G5023 Fragaria x ananassa HOM05D003265 ORTHO05D003819 6.5e-23 113.6 757 28.3
FAN05G5644 Fragaria x ananassa HOM05D003265 ORTHO05D003819 6.5e-23 113.6 744 28.6
Ciclev10011133m.g Citrus clementina HOM05D003265 ORTHO05D003819 4.2e-22 110.9 726 27.5
Psat3g044800 Pisum sativum HOM05D003265 ORTHO05D003819 3.5e-21 107.8 651 30.3
Dinv35709 Davidia involucrata HOM05D003265 ORTHO05D003819 4.6e-21 107.5 606 29.0
Nn2g10657 Nelumbo nucifera HOM05D003265 ORTHO05D003819 7.9e-21 106.7 720 28.1
HanXRQChr11g0350071 Helianthus annuus HOM05D003265 ORTHO05D003819 1.3e-20 105.9 626 27.2
Nitab4.5_0001142g0090 Nicotiana tabacum HOM05D000855 ORTHO05D002321 1.3e-20 105.9 654 28.9
Cc06_g03550 Coffea canephora HOM05D003265 ORTHO05D003819 3.9e-20 104.4 599 27.7
Ca_08825_v3 Cicer arietinum L. HOM05D003265 ORTHO05D003819 2.5e-19 101.7 651 29.3
Nn2g12994 Nelumbo nucifera HOM05D003265 ORTHO05D003819 3.3e-19 101.3 619 28.1
Thhalv10010259m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 5.7e-19 100.5 610 29.0
Lalb_Chr20g0112961 Lupinus albus HOM05D003265 ORTHO05D003819 5.7e-19 100.5 630 27.8
PGR004G1993 Punica granatum HOM05D000855 ORTHO05D002321 5.7e-19 100.5 667 26.7
Oeu035141.2 Olea europaea HOM05D003265 ORTHO05D003819 7.4e-19 100.1 718 26.3
SalBow4G0859 Salvia bowleyana HOM05D003265 ORTHO05D003819 9.7e-19 99.8 584 28.3
Sp5g09010 Schrenkiella parvula HOM05D003265 ORTHO05D003819 9.7e-19 99.8 570 29.6
Ah.15g092100 Amaranthus hybridus HOM05D003265 ORTHO05D003819 2.2e-18 98.6 599 27.2
Nitab4.5_0003895g0030 Nicotiana tabacum HOM05D000855 ORTHO05D002321 2.8e-18 98.2 648 28.5
AUR62040021 Chenopodium quinoa HOM05D003265 ORTHO05D003819 8.2e-18 96.7 537 30.0
Actinidia13106 Actinidia chinensis HOM05D003265 ORTHO05D003819 1.1e-17 96.3 169 40.2
Lalb_Chr01g0019031 Lupinus albus HOM05D003265 ORTHO05D003819 1.4e-17 95.9 615 27.2
Oeu026844.1 Olea europaea HOM05D003265 ORTHO05D003819 2.4e-17 95.1 647 28.7
Lj5g0012648 Lotus japonicus HOM05D003265 ORTHO05D003819 3.1e-17 94.7 578 28.7
HanXRQChr01g0027471 Helianthus annuus HOM05D003265 ORTHO05D003819 4.1e-17 94.4 685 27.0
RhsimUnG0118100 Rhododendron simsii HOM05D003265 ORTHO05D003819 6.9e-17 93.6 698 27.8
SGA_v2.0_scaffold35G14161 Striga asiatica HOM05D003265 ORTHO05D003819 9.0e-17 93.2 609 29.9
Solyc09g007340.4 Solanum lycopersicum HOM05D000855 ORTHO05D002321 1.2e-16 92.8 504 28.4
VMungo1383G3553 Vigna mungo HOM05D003265 ORTHO05D003819 4.5e-16 90.9 629 27.8
Hma1.2p1_0111F.1_g053890 Hydrangea macrophylla HOM05D003265 ORTHO05D003819 5.9e-16 90.5 118 46.6
Sed0024874 Sechium edule HOM05D003265 ORTHO05D003819 7.7e-16 90.1 694 27.4
Medtr7g100700 Medicago truncatula HOM05D003265 ORTHO05D003819 1.3e-15 89.4 671 28.5
Sopen09g002240 Solanum pennellii HOM05D003265 ORTHO05D003819 1.3e-15 89.4 564 27.5
vmacro20061 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 1.7e-15 89.0 118 47.5
GSVIVG01025624001 Vitis vinifera HOM05D000855 ORTHO05D002321 2.9e-15 88.2 154 44.2
Dinv04678 Davidia involucrata HOM05D003265 ORTHO05D003819 3.8e-15 87.8 619 28.6
PSO339G3745 Papaver somniferum HOM05D003265 ORTHO05D003819 3.8e-15 87.8 731 25.2
EL10Ac7g17351 Beta vulgaris HOM05D003265 ORTHO05D003819 6.5e-15 87.0 565 26.9
PSO384G1633 Papaver somniferum HOM05D003265 ORTHO05D003819 8.5e-15 86.7 745 24.6
FAN09G0144 Fragaria x ananassa HOM05D003265 ORTHO05D003819 1.1e-14 86.3 778 26.9
AUR62042920 Chenopodium quinoa HOM05D003265 ORTHO05D003819 1.4e-14 85.9 499 28.3
FAN14G0893 Fragaria x ananassa HOM05D000009 ORTHO05D003819 1.9e-14 85.5 755 27.4
Rhsim04G0151400 Rhododendron simsii HOM05D003265 ORTHO05D003819 1.9e-14 85.5 744 25.5
AT3G53320 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 2.5e-14 85.1 568 26.2
ECA248G3421 Erigeron canadensis HOM05D002706 ORTHO05D003253 4.2e-14 84.3 534 27.0
Lsat_1_v5_gn_1_53881 Lactuca sativa HOM05D003265 ORTHO05D003819 4.2e-14 84.3 494 28.5
Sed0003387 Sechium edule HOM05D003265 ORTHO05D003819 9.4e-14 83.2 702 26.1
Aa31LG10G8510 Aethionema arabicum HOM05D003265 ORTHO05D003819 1.2e-13 82.8 641 27.1
MSTRG.10296 Avicennia marina HOM05D003265 ORTHO05D003819 2.1e-13 82.0 551 29.0
TPR.G36939 Trifolium pratense HOM05D003265 ORTHO05D003819 4.6e-13 80.9 626 27.2
Psat6g070560 Pisum sativum HOM05D003265 ORTHO05D003819 6.1e-13 80.5 577 29.3
Medtr1g066870 Medicago truncatula HOM05D003265 ORTHO05D003819 7.9e-13 80.1 574 27.4
Hund20166 Selenicereus undatus HOM05D003265 ORTHO05D003819 7.9e-13 80.1 645 28.2
Glyma.19G178700 Glycine max HOM05D003265 ORTHO05D003819 1.0e-12 79.7 625 26.4
unitig_746.g26760 Utricularia gibba HOM05D003265 ORTHO05D003819 1.0e-12 79.7 116 44.8
PGSC0003DMG400001737 Solanum tuberosum HOM05D003265 ORTHO05D003819 1.4e-12 79.3 574 26.0
Carub.0005s1987 Capsella rubella HOM05D003265 ORTHO05D003819 3.9e-12 77.8 615 27.5
Lj1g0023124 Lotus japonicus HOM05D003265 ORTHO05D003819 3.9e-12 77.8 648 26.4
AL5G34230 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 6.7e-12 77.0 579 25.4
Manes.09G080700 Manihot esculenta HOM05D003265 ORTHO05D003819 6.7e-12 77.0 349 30.9
CARHR163240 Cardamine hirsuta HOM05D003265 ORTHO05D003819 8.8e-12 76.6 590 25.6
Lj2A107T58 Lonicera japonica HOM05D003265 ORTHO05D003819 1.1e-11 76.3 113 45.1
Gorai.006G168800 Gossypium raimondii HOM05D003265 ORTHO05D003819 2.5e-11 75.1 701 26.0
BcaB01g00290 Brassica carinata HOM05D003265 ORTHO05D003819 4.3e-11 74.3 562 27.2
arahy.Tifrunner.gnm1.ann1.1ZS95I Arachis hypogaea HOM05D003265 ORTHO05D003819 7.4e-11 73.6 669 26.9
GSVIVG01016342001 Vitis vinifera HOM05D003265 ORTHO05D003819 7.4e-11 73.6 723 25.9
A09p46340 Brassica napus HOM05D003265 ORTHO05D003819 9.7e-11 73.2 563 25.6
Sabra19G0043100 Salix brachista HOM05D003265 ORTHO05D010313 2.2e-10 72.0 194 36.6
Sabra19G0046300 Salix brachista HOM05D003265 ORTHO05D010313 2.2e-10 72.0 194 36.6
BraA09t40099Z Brassica rapa HOM05D003265 ORTHO05D003819 2.8e-10 71.6 564 25.9
CiPaw.01G276700 Carya illinoinensis HOM05D003265 ORTHO05D003819 4.8e-10 70.9 169 38.5
arahy.Tifrunner.gnm1.ann1.H355B7 Arachis hypogaea HOM05D003265 ORTHO05D003819 6.3e-10 70.5 639 26.9
Actinidia05272 Actinidia chinensis HOM05D003265 ORTHO05D003819 8.2e-10 70.1 122 36.9
Gohir.D09G147700 Gossypium hirsutum HOM05D003265 ORTHO05D003819 8.2e-10 70.1 614 26.5
Cpa.g.sc53.18 Carica papaya HOM05D003265 ORTHO05D003819 1.1e-09 69.7 151 36.4
Sp4g19390 Schrenkiella parvula HOM05D003265 ORTHO05D003819 1.1e-09 69.7 676 26.9
SGA_v2.0_scaffold94G28667 Striga asiatica HOM05D003265 ORTHO05D003819 1.8e-09 68.9 501 25.0
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 2.4e-09 68.6 137 35.8
BcaB06g28974 Brassica carinata HOM05D003265 ORTHO05D003819 3.1e-09 68.2 556 27.3
QL08p056892 Quercus lobata HOM05D003265 ORTHO05D003819 3.1e-09 68.2 484 26.0
Carub.0004s1895 Capsella rubella HOM05D003265 ORTHO05D003819 4.1e-09 67.8 608 24.7
Thhalv10016413m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 4.1e-09 67.8 648 24.8
TPR.G30247 Trifolium pratense HOM05D003265 ORTHO05D003819 4.1e-09 67.8 577 29.1
THA.LOC104806495 Tarenaya hassleriana HOM05D003265 ORTHO05D003819 6.9e-09 67.0 777 26.0
Oeu026065.2 Olea europaea HOM05D003265 ORTHO05D003819 1.2e-08 66.2 778 24.6
Gorai.013G024900 Gossypium raimondii HOM05D003265 ORTHO05D003819 2.0e-08 65.5 508 26.8
BcaC07g39697 Brassica carinata HOM05D003265 ORTHO05D003819 4.5e-08 64.3 568 27.6
BolC8t50462H Brassica oleracea HOM05D003265 ORTHO05D003819 4.5e-08 64.3 568 27.6
CDE07G1131 Ceratophyllum demersum HOM05D003265 ORTHO05D003819 7.7e-08 63.5 170 30.6
Duzib106G1563 Durio zibethinus HOM05D003265 ORTHO05D003819 1.3e-07 62.8 604 27.5
Manes.10G042100 Manihot esculenta HOM05D003265 ORTHO05D003819 1.7e-07 62.4 587 26.9
PGSC0003DMG400002154 Solanum tuberosum HOM05D014857 ORTHO05D015078 2.9e-07 61.6 138 34.1
CSS0011554 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 3.8e-07 61.2 107 42.1
CDE09G0374 Ceratophyllum demersum HOM05D003265 ORTHO05D003819 3.8e-07 61.2 166 33.7
CSS0013290 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 5.0e-07 60.8 161 34.2
CSS0047156 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 6.5e-07 60.5 97 44.3
ClCG09G020420 Citrullus lanatus HOM05D003265 ORTHO05D003819 6.5e-07 60.5 470 26.6
CSS0028328 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 8.5e-07 60.1 141 39.0
Gohir.A13G021500 Gossypium hirsutum HOM05D003265 ORTHO05D003819 8.5e-07 60.1 507 26.8
MELO3C025500.2 Cucumis melo HOM05D003265 ORTHO05D003819 1.1e-06 59.7 480 26.7
Sc20g0004060 Simmondsia chinensis HOM05D003265 ORTHO05D003819 1.1e-06 59.7 626 24.8
CSS0047270 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 1.4e-06 59.3 113 40.7
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 1.4e-06 59.3 210 26.7
C08p28530 Brassica napus HOM05D003265 ORTHO05D003819 1.9e-06 58.9 559 27.0
Prupe.6G092200 Prunus persica HOM05D006507 ORTHO05D007296 1.9e-06 58.9 96 41.7
AL4G33420 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 2.5e-06 58.5 599 25.0
Cpa.g.sc114.39 Carica papaya HOM05D000666 ORTHO05D001431 3.2e-06 58.2 77 45.5
COL.COLO4_25271 Corchorus olitorius HOM05D006507 ORTHO05D007296 3.2e-06 58.2 214 29.4
CSS0002755 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 4.2e-06 57.8 582 28.4
Gohir.A11G325100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 4.2e-06 57.8 580 25.3
Haze_16937 Corylus avellana HOM05D003265 ORTHO05D003819 5.5e-06 57.4 568 24.3
Solyc06g005660.3 Solanum lycopersicum HOM05D014857 ORTHO05D015078 5.5e-06 57.4 136 34.6
Zm00001eb105840 Zea mays HOM05D003265 ORTHO05D003819 5.5e-06 57.4 493 26.0
FAN03G0618 Fragaria x ananassa HOM05D003265 ORTHO05D003819 7.2e-06 57.0 100 39.0
Lj3g0018374 Lotus japonicus HOM05D006507 ORTHO05D007296 7.2e-06 57.0 127 34.6
GSVIVG01025625001 Vitis vinifera HOM05D003265 ORTHO05D003819 9.4e-06 56.6 214 33.6


User provided reference genes

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