Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI12533 Sapria himalayana HOM05D001233 ORTHO05D001233 4.5e-52 207.6 101 100.0
TAR371G1185 Trochodendron aralioides HOM05D001233 ORTHO05D002195 5.0e-11 71.2 92 47.8
TAR622G0290 Trochodendron aralioides HOM05D001233 ORTHO05D001233 8.5e-11 70.5 92 46.7
TAR729G0001 Trochodendron aralioides HOM05D001233 ORTHO05D001233 8.5e-11 70.5 92 46.7
TAR629G3063 Trochodendron aralioides HOM05D001233 ORTHO05D001233 4.2e-10 68.2 92 46.7
Potri.012G128800 Populus trichocarpa HOM05D001233 ORTHO05D001233 1.2e-09 66.6 91 44.0
Aa31LG4G16450 Aethionema arabicum HOM05D001233 ORTHO05D001233 2.7e-09 65.5 99 45.5
EL10Ac2g02950 Beta vulgaris HOM05D001233 ORTHO05D001233 2.7e-09 65.5 99 40.4
CSS0025683 Camellia sinensis var. sinensis HOM05D001233 ORTHO05D001233 3.6e-09 65.1 98 40.8
Hma1.2p1_0449F.1_g155290 Hydrangea macrophylla HOM05D001233 ORTHO05D001233 3.6e-09 65.1 93 45.2
Sabra12G0096700 Salix brachista HOM05D001233 ORTHO05D001533 3.6e-09 65.1 91 44.0
GSVIVG01011365001 Vitis vinifera HOM05D001233 ORTHO05D001233 3.6e-09 65.1 92 43.5
GSVIVG01011370001 Vitis vinifera HOM05D001233 ORTHO05D001233 3.6e-09 65.1 92 43.5
Duzib084G0186 Durio zibethinus HOM05D001233 ORTHO05D001233 4.7e-09 64.7 89 49.4
Thhalv10010502m.g Eutrema salsugineum HOM05D001233 ORTHO05D001233 6.1e-09 64.3 89 46.1
Thecc.03G082300 Theobroma cacao HOM05D001233 ORTHO05D001233 6.1e-09 64.3 89 46.1
Sabra17G0071600 Salix brachista HOM05D001233 ORTHO05D001233 1.0e-08 63.5 89 43.8
COL.COLO4_14036 Corchorus olitorius HOM05D001233 ORTHO05D001233 1.4e-08 63.2 89 46.1
C03p71990 Brassica napus HOM05D001233 ORTHO05D001233 1.8e-08 62.8 94 44.7
MELO3C017162.2 Cucumis melo HOM05D001233 ORTHO05D001233 1.8e-08 62.8 89 47.2
Potri.017G080200 Populus trichocarpa HOM05D001233 ORTHO05D001233 1.8e-08 62.8 89 44.9
vmacro18204 Vaccinium macrocarpon HOM05D001233 ORTHO05D001233 1.8e-08 62.8 95 40.0
BcaB01g00876 Brassica carinata HOM05D001233 ORTHO05D001233 2.3e-08 62.4 94 44.7
BcaC01g01776 Brassica carinata HOM05D001233 ORTHO05D001233 2.3e-08 62.4 94 44.7
A06p19860 Brassica napus HOM05D000610 ORTHO05D001284 2.3e-08 62.4 94 44.7
BolC3t19497H Brassica oleracea HOM05D001233 ORTHO05D001233 2.3e-08 62.4 94 44.7
BraA06t25068Z Brassica rapa HOM05D001233 ORTHO05D001233 2.3e-08 62.4 94 44.7
Ciclev10012004m.g Citrus clementina HOM05D001233 ORTHO05D001233 2.3e-08 62.4 95 42.1
Nn4g23083 Nelumbo nucifera HOM05D001233 ORTHO05D001233 2.3e-08 62.4 94 42.6
Potri.017G080100 Populus trichocarpa HOM05D001233 ORTHO05D001233 2.3e-08 62.4 89 44.9
Thecc.04G077500 Theobroma cacao HOM05D001233 ORTHO05D001233 2.3e-08 62.4 95 40.0
Atru.chr8.2588 Acer truncatum HOM05D001233 ORTHO05D001233 3.0e-08 62.0 92 42.4
Carub.0005s1391 Capsella rubella HOM05D001233 ORTHO05D001233 3.0e-08 62.0 94 44.7
Dinv06525 Davidia involucrata HOM05D001233 ORTHO05D001233 3.0e-08 62.0 89 43.8
Solyc02g087770.3 Solanum lycopersicum HOM05D001233 ORTHO05D001233 3.0e-08 62.0 93 44.1
Sopen02g032500 Solanum pennellii HOM05D001233 ORTHO05D001233 3.0e-08 62.0 93 44.1
vmacro18205 Vaccinium macrocarpon HOM05D001233 ORTHO05D001233 3.0e-08 62.0 89 47.2
Actinidia34986 Actinidia chinensis HOM05D001233 ORTHO05D001233 4.0e-08 61.6 89 43.8
Haze_07354 Corylus avellana HOM05D001233 ORTHO05D001233 4.0e-08 61.6 89 47.2
MELO3C017161.2 Cucumis melo HOM05D001233 ORTHO05D001233 4.0e-08 61.6 89 46.1
AL5G27090 Arabidopsis lyrata HOM05D001233 ORTHO05D001233 5.2e-08 61.2 94 44.7
Ciclev10024457m.g Citrus clementina HOM05D001233 ORTHO05D001233 5.2e-08 61.2 89 43.8
Lalb_Chr12g0196791 Lupinus albus HOM05D001233 ORTHO05D001233 5.2e-08 61.2 89 44.9
Nn1g02326 Nelumbo nucifera HOM05D001233 ORTHO05D001233 5.2e-08 61.2 95 41.1
Actinidia02707 Actinidia chinensis HOM05D001233 ORTHO05D001233 6.7e-08 60.8 92 41.3
Sed0017673 Sechium edule HOM05D001233 ORTHO05D001233 6.7e-08 60.8 89 43.8
Atru.chr3.100 Acer truncatum HOM05D001233 ORTHO05D001233 8.8e-08 60.5 92 41.3
CSS0013197 Camellia sinensis var. sinensis HOM05D001233 ORTHO05D001233 8.8e-08 60.5 95 36.8
CSS0015640 Camellia sinensis var. sinensis HOM05D001233 ORTHO05D001233 8.8e-08 60.5 95 36.8
CSS0019435 Camellia sinensis var. sinensis HOM05D001233 ORTHO05D001233 8.8e-08 60.5 95 36.8
CSS0029878 Camellia sinensis var. sinensis HOM05D001233 ORTHO05D001233 8.8e-08 60.5 95 36.8
Cfa018970 Carpinus fangiana HOM05D001233 ORTHO05D001233 8.8e-08 60.5 89 46.1
Manes.06G095000 Manihot esculenta HOM05D001233 ORTHO05D001233 8.8e-08 60.5 89 44.9
Medtr4g108260 Medicago truncatula HOM05D001233 ORTHO05D001233 8.8e-08 60.5 98 39.8
Potri.004G129700 Populus trichocarpa HOM05D001233 ORTHO05D001233 8.8e-08 60.5 88 44.3
Rhsim08G0067700 Rhododendron simsii HOM05D001233 ORTHO05D001233 8.8e-08 60.5 89 44.9
RcHm_v2.0_Chr2g0168911 Rosa chinensis HOM05D001233 ORTHO05D001233 8.8e-08 60.5 95 43.2
SalBow1G4915 Salvia bowleyana HOM05D001233 ORTHO05D001233 8.8e-08 60.5 89 40.4
SalBow5G0907 Salvia bowleyana HOM05D001233 ORTHO05D001233 8.8e-08 60.5 89 42.7
CANSAT64G0969 Cannabis sativa HOM05D001233 ORTHO05D001233 1.1e-07 60.1 89 43.8
CANSAT64G2092 Cannabis sativa HOM05D001233 ORTHO05D001233 1.1e-07 60.1 89 43.8
CAN.G1305.6 Capsicum annuum HOM05D001233 ORTHO05D001233 1.1e-07 60.1 96 38.5
ClCG06G016310 Citrullus lanatus HOM05D001233 ORTHO05D001233 1.1e-07 60.1 89 46.1
SalBow5G1115 Salvia bowleyana HOM05D001233 ORTHO05D001233 1.1e-07 60.1 89 42.7
Sp5g14160 Schrenkiella parvula HOM05D001233 ORTHO05D001233 1.1e-07 60.1 94 43.6
CARHR156480 Cardamine hirsuta HOM05D001233 ORTHO05D001233 1.5e-07 59.7 94 43.6
Lj1g0007234 Lotus japonicus HOM05D001233 ORTHO05D001233 1.5e-07 59.7 89 44.9
Peaxi162Scf00129g00433 Petunia axillaris HOM05D001233 ORTHO05D001233 1.5e-07 59.7 89 41.6
Atru.chr9.2290 Acer truncatum HOM05D001233 ORTHO05D001233 2.0e-07 59.3 96 38.5
Ah.10g031440 Amaranthus hybridus HOM05D001233 ORTHO05D001233 2.0e-07 59.3 88 43.2
Aqoxy3G03320 Aquilegia oxysepala HOM05D001233 ORTHO05D001233 2.0e-07 59.3 89 46.1
AT3G47800 Arabidopsis thaliana HOM05D001233 ORTHO05D001233 2.0e-07 59.3 94 43.6
CAN.G206.129 Capsicum annuum HOM05D001233 ORTHO05D001233 2.0e-07 59.3 88 44.3
Oeu060787.1 Olea europaea HOM05D001233 ORTHO05D001233 2.0e-07 59.3 94 41.5
Atru.chr8.2673 Acer truncatum HOM05D001233 ORTHO05D001233 2.6e-07 58.9 92 40.2
Duzib147G0258 Durio zibethinus HOM05D001233 ORTHO05D001233 2.6e-07 58.9 95 40.0
Gohir.D11G033200 Gossypium hirsutum HOM05D001233 ORTHO05D001233 2.6e-07 58.9 98 37.8
Oeu062090.2 Olea europaea HOM05D001233 ORTHO05D001233 2.6e-07 58.9 89 42.7
GSVIVG01008039001 Vitis vinifera HOM05D001233 ORTHO05D001233 2.6e-07 58.9 90 36.7
CAN.G206.130 Capsicum annuum HOM05D001233 ORTHO05D001233 3.3e-07 58.5 88 44.3
Glyma.09G239800 Glycine max HOM05D001233 ORTHO05D001233 3.3e-07 58.5 90 38.9
Lsat_1_v5_gn_4_177060 Lactuca sativa HOM05D001233 ORTHO05D001233 3.3e-07 58.5 88 42.0
MBI05_g00396_MAGBIO Magnolia biondii HOM05D001233 ORTHO05D001233 3.3e-07 58.5 89 46.1
Nitab4.5_0000564g0260 Nicotiana tabacum HOM05D001233 ORTHO05D001233 3.3e-07 58.5 89 42.7
Potri.017G080000 Populus trichocarpa HOM05D001233 ORTHO05D001233 3.3e-07 58.5 96 40.6
PGR083G2604 Punica granatum HOM05D001233 ORTHO05D001233 3.3e-07 58.5 89 43.8
QL06p003735 Quercus lobata HOM05D001233 ORTHO05D001233 3.3e-07 58.5 89 41.6
CsaV3_1G002220 Cucumis sativus L. HOM05D001233 ORTHO05D001233 4.4e-07 58.2 91 42.9
ECA232G4212 Erigeron canadensis HOM05D001233 ORTHO05D001233 4.4e-07 58.2 91 40.7
Migut.I00151 Erythranthe guttata HOM05D001233 ORTHO05D001233 4.4e-07 58.2 89 42.7
Nitab4.5_0000564g0240 Nicotiana tabacum HOM05D001233 ORTHO05D001233 4.4e-07 58.2 92 42.4
Oeu060928.1 Olea europaea HOM05D001233 ORTHO05D001233 4.4e-07 58.2 90 38.9
CiPaw.11G041400 Carya illinoinensis HOM05D001233 ORTHO05D001233 5.7e-07 57.8 89 40.4
MBI02_g10679_MAGBIO Magnolia biondii HOM05D001233 ORTHO05D001233 5.7e-07 57.8 89 44.9
QL02p081190 Quercus lobata HOM05D001233 ORTHO05D001233 5.7e-07 57.8 92 42.4
Rhsim12G0157700 Rhododendron simsii HOM05D001233 ORTHO05D001233 5.7e-07 57.8 92 38.0
Solyc02g087780.3 Solanum lycopersicum HOM05D001233 ORTHO05D001233 5.7e-07 57.8 89 42.7
Sopen02g032510 Solanum pennellii HOM05D001233 ORTHO05D001233 5.7e-07 57.8 89 42.7
BcaB08g36922 Brassica carinata HOM05D001233 ORTHO05D001233 7.5e-07 57.4 89 44.9
BcaB08g36924 Brassica carinata HOM05D001233 ORTHO05D001233 7.5e-07 57.4 89 44.9
Duzib147G0746 Durio zibethinus HOM05D001233 ORTHO05D001233 7.5e-07 57.4 95 40.0
Glyma.18G257700 Glycine max HOM05D001233 ORTHO05D001233 7.5e-07 57.4 90 38.9
Prupe.5G188800 Prunus persica HOM05D001233 ORTHO05D001233 7.5e-07 57.4 92 38.0
Sabra17G0071500 Salix brachista HOM05D001233 ORTHO05D001233 7.5e-07 57.4 93 40.9
Sopen03g032110 Solanum pennellii HOM05D001233 ORTHO05D001233 7.5e-07 57.4 89 42.7
PGSC0003DMG400018084 Solanum tuberosum HOM05D001233 ORTHO05D001233 7.5e-07 57.4 89 42.7
Gorai.007G036000 Gossypium raimondii HOM05D001233 ORTHO05D001233 9.7e-07 57.0 98 36.7
QL02p081175 Quercus lobata HOM05D001233 ORTHO05D001233 9.7e-07 57.0 95 37.9
CiPaw.03G029100 Carya illinoinensis HOM05D001233 ORTHO05D001233 1.3e-06 56.6 92 41.3
Dinv19931 Davidia involucrata HOM05D001233 ORTHO05D012157 1.3e-06 56.6 92 37.0
Lj9C460G7 Lonicera japonica HOM05D001233 ORTHO05D001233 1.3e-06 56.6 91 42.9
MD14G1196700 Malus domestica HOM05D001233 ORTHO05D001233 1.3e-06 56.6 89 44.9
PSO591G0335 Papaver somniferum HOM05D001233 ORTHO05D001233 1.3e-06 56.6 88 42.0
Psat3g196000 Pisum sativum HOM05D001233 ORTHO05D001233 1.3e-06 56.6 90 40.0
PGR044G2496 Punica granatum HOM05D001233 ORTHO05D001233 1.3e-06 56.6 89 44.9
Rhsim08G0067600 Rhododendron simsii HOM05D001233 ORTHO05D001233 1.3e-06 56.6 89 41.6
Solyc03g113030.4 Solanum lycopersicum HOM05D001233 ORTHO05D001233 1.3e-06 56.6 98 37.8
Atru.chr3.99 Acer truncatum HOM05D001233 ORTHO05D001233 1.7e-06 56.2 92 39.1
Atru.chr8.2589 Acer truncatum HOM05D001233 ORTHO05D001233 1.7e-06 56.2 92 39.1
Atru.chr8.2672 Acer truncatum HOM05D001233 ORTHO05D001233 1.7e-06 56.2 92 39.1
AL6G25960 Arabidopsis lyrata HOM05D001233 ORTHO05D001233 1.7e-06 56.2 89 44.9
Cpa.g.sc388.4 Carica papaya HOM05D001233 ORTHO05D001233 1.7e-06 56.2 89 40.4
MELO3C035180.2 Cucumis melo HOM05D001233 ORTHO05D001233 1.7e-06 56.2 91 40.7
CsaV3_3G041600 Cucumis sativus L. HOM05D001233 ORTHO05D001233 1.7e-06 56.2 88 40.9
PSO591G0417 Papaver somniferum HOM05D001233 ORTHO05D001233 1.7e-06 56.2 89 40.4
QL10p016156 Quercus lobata HOM05D001233 ORTHO05D001233 1.7e-06 56.2 89 41.6
QL93p0043_0009 Quercus lobata HOM05D001233 ORTHO05D001233 1.7e-06 56.2 89 41.6
arahy.Tifrunner.gnm1.ann1.L7YHKS Arachis hypogaea HOM05D001233 ORTHO05D001233 2.2e-06 55.8 95 36.8
A10p23720 Brassica napus HOM05D001233 ORTHO05D001233 2.2e-06 55.8 89 43.8
BraA10t44434Z Brassica rapa HOM05D001233 ORTHO05D001233 2.2e-06 55.8 89 43.8
CAN.G206.128 Capsicum annuum HOM05D001233 ORTHO05D001233 2.2e-06 55.8 88 40.9
MELO3C009884.2 Cucumis melo HOM05D001233 ORTHO05D001233 2.2e-06 55.8 88 40.9
Gohir.D04G050200 Gossypium hirsutum HOM05D001233 ORTHO05D001233 2.2e-06 55.8 88 40.9
Gorai.012G055600 Gossypium raimondii HOM05D001233 ORTHO05D001233 2.2e-06 55.8 88 40.9
Lj7A399T58 Lonicera japonica HOM05D001233 ORTHO05D001233 2.2e-06 55.8 95 40.0
MD17G1048800 Malus domestica HOM05D001233 ORTHO05D001233 2.2e-06 55.8 92 38.0
Nn3g17164 Nelumbo nucifera HOM05D001233 ORTHO05D001233 2.2e-06 55.8 96 39.6
PGSC0003DMG401001316 Solanum tuberosum HOM05D001233 ORTHO05D001233 2.2e-06 55.8 89 41.6
TPR.G4343 Trifolium pratense HOM05D001233 ORTHO05D001233 2.2e-06 55.8 88 40.9
TWI32G0663 Tripterygium wilfordii HOM05D001233 ORTHO05D001233 2.2e-06 55.8 89 40.4
TWI60G0099 Tripterygium wilfordii HOM05D001233 ORTHO05D001233 2.2e-06 55.8 96 35.4
Medtr6g011560 Medicago truncatula HOM05D001233 ORTHO05D001233 2.8e-06 55.5 88 38.6
Medtr7g009930 Medicago truncatula HOM05D001233 ORTHO05D001233 2.8e-06 55.5 88 40.9
DCAR_026067 Daucus carota HOM05D001233 ORTHO05D001233 3.7e-06 55.1 98 38.8
ECA232G1282 Erigeron canadensis HOM05D001233 ORTHO05D001233 3.7e-06 55.1 96 39.6
Lalb_Chr02g0159601 Lupinus albus HOM05D001233 ORTHO05D001233 3.7e-06 55.1 88 39.8
Psat1g075720 Pisum sativum HOM05D001233 ORTHO05D001233 3.7e-06 55.1 95 36.8
arahy.Tifrunner.gnm1.ann1.MQNW98 Arachis hypogaea HOM05D001233 ORTHO05D001233 4.8e-06 54.7 95 37.9
Lj7A442T85 Lonicera japonica HOM05D001233 ORTHO05D001233 4.8e-06 54.7 95 38.9
Lj2g0019347 Lotus japonicus HOM05D001233 ORTHO05D001233 4.8e-06 54.7 89 38.2
RhsimUnG0099200 Rhododendron simsii HOM05D001233 ORTHO05D001233 4.8e-06 54.7 89 39.3
arahy.Tifrunner.gnm1.ann1.54ZV2T Arachis hypogaea HOM05D001233 ORTHO05D001233 6.3e-06 54.3 95 36.8
arahy.Tifrunner.gnm1.ann1.Y3RZ5Q Arachis hypogaea HOM05D001233 ORTHO05D001233 6.3e-06 54.3 95 37.9
CAN.G206.132 Capsicum annuum HOM05D001233 ORTHO05D001233 6.3e-06 54.3 90 40.0
FvH4_6g49081 Fragaria vesca HOM05D001233 ORTHO05D001233 6.3e-06 54.3 95 37.9
FAN14G4863 Fragaria x ananassa HOM05D001233 ORTHO05D001233 6.3e-06 54.3 95 37.9
SGA_v2.0_scaffold56G20039 Striga asiatica HOM05D001233 ORTHO05D001233 6.3e-06 54.3 98 35.7
Aqoxy3G03318 Aquilegia oxysepala HOM05D001233 ORTHO05D001233 8.2e-06 53.9 90 42.2
Cpa.g.sc14.24 Carica papaya HOM05D001233 ORTHO05D001233 8.2e-06 53.9 92 38.0
Haze_14560 Corylus avellana HOM05D001233 ORTHO05D001233 8.2e-06 53.9 92 37.0
Gohir.A05G364600 Gossypium hirsutum HOM05D001233 ORTHO05D001233 8.2e-06 53.9 88 39.8
Lj1g0004969 Lotus japonicus HOM05D001233 ORTHO05D001233 8.2e-06 53.9 90 36.7
Solyc02g087790.2 Solanum lycopersicum HOM05D001233 ORTHO05D001233 8.2e-06 53.9 90 40.0
Sopen02g032520 Solanum pennellii HOM05D001233 ORTHO05D001233 8.2e-06 53.9 90 40.0
THA.LOC104819435 Tarenaya hassleriana HOM05D001233 ORTHO05D001233 8.2e-06 53.9 92 40.2


User provided reference genes

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